Wall clock time and date at job start Tue Mar 31 2020 19:32:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34232 * 116.99842 * 2 1 4 4 O 1.20821 * 119.99966 * 0.02562 * 3 2 1 5 5 C 1.50704 * 120.00021 * 179.97438 * 3 2 1 6 6 N 1.46491 * 109.47197 * 180.02562 * 5 3 2 7 7 C 1.37095 * 120.00027 * 271.40081 * 6 5 3 8 8 H 1.08009 * 119.99994 * 144.31236 * 7 6 5 9 9 C 1.38954 * 119.99982 * 324.30735 * 7 6 5 10 10 N 1.31412 * 119.99875 * 161.31876 * 9 7 6 11 11 Si 1.86795 * 120.00069 * 341.32452 * 9 7 6 12 12 H 1.48495 * 109.47171 * 95.37378 * 11 9 7 13 13 H 1.48493 * 109.47138 * 215.38104 * 11 9 7 14 14 H 1.48507 * 109.46770 * 335.37584 * 11 9 7 15 15 C 1.34779 * 120.00013 * 91.39494 * 6 5 3 16 16 O 1.21288 * 119.99916 * 354.44162 * 15 6 5 17 17 C 1.50704 * 120.00060 * 174.43539 * 15 6 5 18 18 C 1.52997 * 115.54932 * 72.29568 * 17 15 6 19 19 C 1.50698 * 109.47185 * 40.68819 * 18 17 15 20 20 C 1.38245 * 119.97430 * 81.73652 * 19 18 17 21 21 C 1.38200 * 120.02891 * 180.02562 * 20 19 18 22 22 C 1.38462 * 119.96996 * 0.24025 * 21 20 19 23 23 F 1.35103 * 120.02283 * 179.72999 * 22 21 20 24 24 C 1.38460 * 119.95011 * 359.48706 * 22 21 20 25 25 C 1.38201 * 119.97461 * 0.53131 * 24 22 21 26 26 C 1.53003 * 117.51884 * 218.00052 * 17 15 6 27 27 C 1.53006 * 60.00104 * 107.48021 * 26 17 15 28 28 H 1.08998 * 109.47171 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.47160 * 299.99707 * 1 2 3 30 30 H 1.09000 * 109.47416 * 59.99818 * 1 2 3 31 31 H 1.09003 * 109.46639 * 60.00043 * 5 3 2 32 32 H 1.09002 * 109.46972 * 300.00413 * 5 3 2 33 33 H 0.96998 * 119.99478 * 185.01428 * 10 9 7 34 34 H 1.09002 * 109.47185 * 280.68784 * 18 17 15 35 35 H 1.08995 * 109.47063 * 160.68934 * 18 17 15 36 36 H 1.08002 * 119.98648 * 0.03006 * 20 19 18 37 37 H 1.07995 * 120.01733 * 179.97438 * 21 20 19 38 38 H 1.08003 * 120.01650 * 180.25691 * 24 22 21 39 39 H 1.07999 * 119.98920 * 179.74267 * 25 24 22 40 40 H 1.09002 * 117.49741 * 214.96795 * 26 17 15 41 41 H 1.08994 * 117.49886 * 359.97438 * 26 17 15 42 42 H 1.08996 * 117.49860 * 252.51061 * 27 26 17 43 43 H 1.09001 * 117.51572 * 107.47999 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5663 1.2750 0.0006 6 7 3.9816 2.6798 0.0011 7 6 4.1486 3.3456 -1.1856 8 1 3.8865 4.3908 -1.2599 9 6 4.6550 2.6759 -2.2928 10 7 4.4807 3.1719 -3.4971 11 14 5.5834 1.0705 -2.0692 12 1 4.6520 -0.0704 -2.2583 13 1 6.6773 0.9878 -3.0701 14 1 6.1592 1.0181 -0.7013 15 6 4.1995 3.3177 1.1682 16 8 3.9553 2.7615 2.2180 17 6 4.7466 4.7219 1.1687 18 6 3.7710 5.8104 0.7171 19 6 2.4060 5.5314 1.2916 20 6 2.1140 5.9040 2.5905 21 6 0.8627 5.6482 3.1186 22 6 -0.0969 5.0139 2.3479 23 9 -1.3186 4.7585 2.8650 24 6 0.1949 4.6463 1.0453 25 6 1.4469 4.9028 0.5194 26 6 5.7569 5.0865 2.2584 27 6 6.2234 4.9048 0.8126 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 3.9563 0.7806 -0.8892 32 1 3.9557 0.7810 0.8908 33 1 4.7698 2.6696 -4.2750 34 1 3.7126 5.8172 -0.3713 35 1 4.1215 6.7809 1.0682 36 1 2.8639 6.3953 3.1927 37 1 0.6349 5.9390 4.1334 38 1 -0.5542 4.1552 0.4418 39 1 1.6761 4.6123 -0.4952 40 1 5.7265 6.1019 2.6535 41 1 6.0257 4.3108 2.9754 42 1 6.7992 4.0095 0.5783 43 1 6.4997 5.8005 0.2562 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000445834119.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:32:13 Heat of formation + Delta-G solvation = -103.241564 kcal Electronic energy + Delta-G solvation = -31014.070313 eV Core-core repulsion = 26747.386633 eV Total energy + Delta-G solvation = -4266.683680 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.137 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -49.87065 -41.78938 -40.91337 -39.67771 -37.88239 -37.20181 -36.63452 -33.91708 -32.90732 -31.95986 -30.64019 -28.20347 -27.61092 -26.93207 -23.99430 -23.82681 -23.12349 -22.59132 -22.07036 -20.35673 -19.16751 -18.86955 -18.44739 -18.00237 -17.43661 -17.23761 -17.06141 -16.95026 -16.58140 -16.48248 -16.05633 -15.73917 -15.07769 -14.90389 -14.81961 -14.65007 -14.43836 -14.26988 -14.21864 -14.06508 -13.59608 -13.42545 -13.30702 -12.96753 -12.83569 -12.71778 -12.55769 -12.29135 -12.17403 -11.95032 -11.77360 -11.72452 -11.55612 -11.31015 -11.07272 -10.70214 -10.41200 -9.89776 -9.84489 -9.38755 -8.41538 -6.06065 0.26008 0.44915 1.14463 1.21175 1.32343 1.39978 1.50982 1.98412 2.15229 2.49287 2.72966 3.03206 3.06471 3.36271 3.77288 3.83547 3.89464 3.92535 3.99655 4.01609 4.08934 4.18601 4.23248 4.28221 4.28625 4.44279 4.47436 4.55933 4.61936 4.87811 4.90838 4.92835 5.10532 5.13913 5.14631 5.24326 5.27064 5.27576 5.36842 5.37952 5.46799 5.76636 6.06565 6.14305 6.30980 6.80261 6.98981 7.38178 7.73590 8.69101 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.010409 B = 0.006666 C = 0.004870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2689.288121 B = 4199.509112 C = 5747.801183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.373 6.373 3 C 0.442 3.558 4 O -0.493 6.493 5 C 0.099 3.901 6 N -0.451 5.451 7 C -0.318 4.318 8 H 0.103 0.897 9 C 0.028 3.972 10 N -0.895 5.895 11 Si 0.904 3.096 12 H -0.262 1.262 13 H -0.283 1.283 14 H -0.255 1.255 15 C 0.528 3.472 16 O -0.611 6.611 17 C -0.138 4.138 18 C -0.030 4.030 19 C -0.099 4.099 20 C -0.080 4.080 21 C -0.160 4.160 22 C 0.067 3.933 23 F -0.152 7.152 24 C -0.149 4.149 25 C -0.057 4.057 26 C -0.138 4.138 27 C -0.142 4.142 28 H 0.135 0.865 29 H 0.054 0.946 30 H 0.057 0.943 31 H 0.099 0.901 32 H 0.116 0.884 33 H 0.278 0.722 34 H 0.073 0.927 35 H 0.111 0.889 36 H 0.158 0.842 37 H 0.155 0.845 38 H 0.119 0.881 39 H 0.112 0.888 40 H 0.132 0.868 41 H 0.084 0.916 42 H 0.078 0.922 43 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.495 2.121 7.740 8.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.289 6.289 3 C 0.282 3.718 4 O -0.378 6.378 5 C -0.026 4.026 6 N -0.171 5.171 7 C -0.446 4.446 8 H 0.121 0.879 9 C -0.176 4.176 10 N -0.532 5.532 11 Si 0.731 3.269 12 H -0.189 1.189 13 H -0.209 1.209 14 H -0.179 1.179 15 C 0.319 3.681 16 O -0.496 6.496 17 C -0.141 4.141 18 C -0.067 4.067 19 C -0.099 4.099 20 C -0.097 4.097 21 C -0.178 4.178 22 C 0.048 3.952 23 F -0.131 7.131 24 C -0.168 4.168 25 C -0.075 4.075 26 C -0.175 4.175 27 C -0.179 4.179 28 H 0.153 0.847 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.116 0.884 32 H 0.133 0.867 33 H 0.088 0.912 34 H 0.091 0.909 35 H 0.129 0.871 36 H 0.175 0.825 37 H 0.172 0.828 38 H 0.137 0.863 39 H 0.130 0.870 40 H 0.150 0.850 41 H 0.102 0.898 42 H 0.097 0.903 43 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -1.820 2.148 8.058 8.536 hybrid contribution -0.399 -1.368 -0.713 1.593 sum -2.219 0.780 7.346 7.713 Atomic orbital electron populations 1.23457 0.75143 1.05474 1.01976 1.86482 1.24898 1.33104 1.84461 1.24570 0.92745 0.81905 0.72557 1.90626 1.66689 1.36420 1.44106 1.21414 0.88073 0.88451 1.04642 1.43426 1.58631 1.08433 1.06645 1.19119 1.41721 0.97860 0.85854 0.87922 1.25790 0.96446 1.00532 0.94843 1.69717 1.45067 1.40055 0.98370 0.86474 0.79966 0.81184 0.79311 1.18893 1.20937 1.17934 1.19966 0.78226 0.87921 0.81971 1.90528 1.56989 1.69415 1.32693 1.20963 0.92973 0.91981 1.08172 1.20121 0.88982 0.96900 1.00666 1.20091 0.96009 0.98892 0.94941 1.21099 0.95887 0.98560 0.94178 1.21272 0.93487 1.01898 1.01172 1.17892 0.81264 1.02718 0.93311 1.91422 1.41848 1.92693 1.87130 1.20978 0.98842 1.02501 0.94442 1.20865 0.91924 0.94545 1.00175 1.23176 0.99212 1.03726 0.91394 1.22936 0.93123 1.03632 0.98201 0.84676 0.92704 0.92387 0.88414 0.86650 0.91218 0.90880 0.87070 0.82488 0.82783 0.86273 0.87018 0.84965 0.89755 0.90337 0.86158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.91 10.56 113.37 1.20 2.10 16 2 O -0.37 -13.57 10.57 -51.44 -0.54 -14.11 16 3 C 0.44 18.90 8.02 71.24 0.57 19.47 16 4 O -0.49 -22.53 12.77 21.98 0.28 -22.25 16 5 C 0.10 4.30 4.77 85.64 0.41 4.71 16 6 N -0.45 -20.44 1.72 -639.59 -1.10 -21.54 16 7 C -0.32 -15.28 8.74 84.04 0.73 -14.54 16 8 H 0.10 5.17 4.97 -2.91 -0.01 5.16 16 9 C 0.03 1.37 5.38 84.93 0.46 1.83 16 10 N -0.89 -46.99 13.95 21.66 0.30 -46.69 16 11 Si 0.90 38.37 24.73 68.60 1.70 40.07 16 12 H -0.26 -10.65 6.75 99.48 0.67 -9.98 16 13 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 14 H -0.26 -10.58 7.05 99.48 0.70 -9.88 16 15 C 0.53 23.05 5.55 87.66 0.49 23.54 16 16 O -0.61 -29.56 16.49 -3.06 -0.05 -29.61 16 17 C -0.14 -4.83 1.24 -52.92 -0.07 -4.90 16 18 C -0.03 -0.95 5.03 29.85 0.15 -0.80 16 19 C -0.10 -3.45 4.24 -19.86 -0.08 -3.53 16 20 C -0.08 -2.38 9.73 22.26 0.22 -2.17 16 21 C -0.16 -4.86 10.03 22.31 0.22 -4.63 16 22 C 0.07 2.35 7.30 22.38 0.16 2.51 16 23 F -0.15 -5.20 17.27 44.97 0.78 -4.43 16 24 C -0.15 -5.66 9.11 22.31 0.20 -5.46 16 25 C -0.06 -2.25 7.59 22.26 0.17 -2.08 16 26 C -0.14 -3.81 9.73 30.60 0.30 -3.51 16 27 C -0.14 -4.31 9.75 30.60 0.30 -4.01 16 28 H 0.14 2.58 8.14 -2.39 -0.02 2.56 16 29 H 0.05 1.56 8.13 -2.38 -0.02 1.54 16 30 H 0.06 1.63 8.13 -2.39 -0.02 1.61 16 31 H 0.10 4.19 2.67 -2.39 -0.01 4.19 16 32 H 0.12 4.75 7.46 -2.39 -0.02 4.74 16 33 H 0.28 13.77 8.32 -92.71 -0.77 13.00 16 34 H 0.07 2.64 5.83 -2.39 -0.01 2.63 16 35 H 0.11 2.65 7.95 -2.39 -0.02 2.63 16 36 H 0.16 3.62 8.06 -2.91 -0.02 3.59 16 37 H 0.15 3.71 8.06 -2.91 -0.02 3.68 16 38 H 0.12 4.49 8.06 -2.91 -0.02 4.47 16 39 H 0.11 5.04 7.25 -2.91 -0.02 5.02 16 40 H 0.13 2.64 8.09 -2.39 -0.02 2.62 16 41 H 0.08 2.53 8.12 -2.39 -0.02 2.51 16 42 H 0.08 2.63 8.14 -2.39 -0.02 2.61 16 43 H 0.12 3.09 8.14 -2.39 -0.02 3.07 16 Total: -1.00 -63.26 360.67 7.80 -55.46 By element: Atomic # 1 Polarization: 33.54 SS G_CDS: 1.01 Total: 34.55 kcal Atomic # 6 Polarization: 3.11 SS G_CDS: 5.43 Total: 8.54 kcal Atomic # 7 Polarization: -67.43 SS G_CDS: -0.80 Total: -68.22 kcal Atomic # 8 Polarization: -65.66 SS G_CDS: -0.31 Total: -65.97 kcal Atomic # 9 Polarization: -5.20 SS G_CDS: 0.78 Total: -4.43 kcal Atomic # 14 Polarization: 38.37 SS G_CDS: 1.70 Total: 40.07 kcal Total: -63.26 7.80 -55.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000445834119.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.780 kcal (2) G-P(sol) polarization free energy of solvation -63.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds