Wall clock time and date at job start Tue Mar 31 2020 19:22:15
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.45196 * 1
3 3 C 1.34715 * 116.99791 * 2 1
4 4 O 1.21462 * 119.99987 * 359.97438 * 3 2 1
5 5 C 1.47727 * 119.99550 * 179.97438 * 3 2 1
6 6 C 1.39475 * 119.98500 * 359.72528 * 5 3 2
7 7 C 1.37928 * 119.65612 * 179.77294 * 6 5 3
8 8 C 1.38175 * 120.03601 * 0.58616 * 7 6 5
9 9 C 1.38856 * 120.69834 * 359.73963 * 8 7 6
10 10 C 1.37574 * 119.81866 * 359.84232 * 9 8 7
11 11 C 1.50694 * 121.74116 * 180.52822 * 10 9 8
12 12 C 1.52901 * 109.97356 * 343.06363 * 11 10 9
13 13 N 1.47167 * 108.48955 * 50.30156 * 12 11 10
14 14 C 1.46895 * 111.00164 * 165.41227 * 13 12 11
15 15 C 1.53006 * 109.47214 * 56.93085 * 14 13 12
16 16 C 1.52995 * 109.47336 * 180.02562 * 15 14 13
17 17 S 1.81005 * 109.46879 * 180.02562 * 16 15 14
18 18 C 1.76209 * 99.99826 * 179.97438 * 17 16 15
19 19 H 1.08003 * 119.99455 * 0.02562 * 18 17 16
20 20 C 1.38797 * 119.99947 * 179.97438 * 18 17 16
21 21 N 1.31630 * 119.99965 * 0.02562 * 20 18 17
22 22 Si 1.86802 * 119.99795 * 179.97438 * 20 18 17
23 23 H 1.48494 * 109.47032 * 0.02562 * 22 20 18
24 24 H 1.48505 * 109.46962 * 120.00393 * 22 20 18
25 25 H 1.48501 * 109.46827 * 240.00329 * 22 20 18
26 26 C 1.46633 * 110.24137 * 288.82749 * 13 12 11
27 27 H 1.08996 * 109.47465 * 300.00039 * 1 2 3
28 28 H 1.08999 * 109.47008 * 60.00049 * 1 2 3
29 29 H 1.09005 * 109.47352 * 180.02562 * 1 2 3
30 30 H 1.07999 * 120.17216 * 0.02562 * 6 5 3
31 31 H 1.08001 * 119.97981 * 180.31235 * 7 6 5
32 32 H 1.07997 * 119.65240 * 179.72271 * 8 7 6
33 33 H 1.08999 * 109.38715 * 103.21981 * 11 10 9
34 34 H 1.08995 * 109.38661 * 222.91131 * 11 10 9
35 35 H 1.09000 * 109.63937 * 290.59746 * 12 11 10
36 36 H 1.09000 * 109.79485 * 170.09297 * 12 11 10
37 37 H 1.08997 * 109.47494 * 176.92906 * 14 13 12
38 38 H 1.09003 * 109.47228 * 296.93436 * 14 13 12
39 39 H 1.09003 * 109.47184 * 300.00394 * 15 14 13
40 40 H 1.09003 * 109.46736 * 60.00050 * 15 14 13
41 41 H 1.08997 * 109.47244 * 299.99743 * 16 15 14
42 42 H 1.08994 * 109.47510 * 59.99956 * 16 15 14
43 43 H 0.96997 * 119.99836 * 179.97438 * 21 20 18
44 44 H 1.08997 * 109.26818 * 292.33109 * 26 13 12
45 45 H 1.08999 * 109.23512 * 172.84482 * 26 13 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4520 0.0000 0.0000
3 6 2.0635 1.2003 0.0000
4 8 1.4019 2.2190 -0.0005
5 6 3.5388 1.2776 0.0006
6 6 4.2980 0.1076 0.0069
7 6 5.6750 0.1876 0.0026
8 6 6.2961 1.4219 0.0044
9 6 5.5482 2.5919 0.0050
10 6 4.1740 2.5253 0.0006
11 6 3.3202 3.7670 -0.0108
12 6 4.1556 4.9791 0.4027
13 7 5.3865 4.9946 -0.4039
14 6 6.0609 6.2962 -0.3101
15 6 6.3584 6.6120 1.1572
16 6 7.0602 7.9680 1.2549
17 16 7.4127 8.3411 2.9906
18 6 8.1979 9.9086 2.8133
19 1 8.3266 10.3400 1.8315
20 6 8.6499 10.5892 3.9353
21 7 8.4925 10.0636 5.1317
22 14 9.4829 12.2506 3.7471
23 1 9.5371 12.6172 2.3091
24 1 8.7110 13.2784 4.4908
25 1 10.8624 12.1771 4.2920
26 6 6.2796 3.9088 0.0125
27 1 -0.3634 0.5138 0.8899
28 1 -0.3633 0.5138 -0.8900
29 1 -0.3634 -1.0277 0.0005
30 1 3.8103 -0.8560 0.0110
31 1 6.2680 -0.7150 0.0024
32 1 7.3746 1.4774 0.0056
33 1 2.9251 3.9252 -1.0142
34 1 2.4923 3.6432 0.6871
35 1 4.4113 4.9045 1.4596
36 1 3.5906 5.8943 0.2263
37 1 6.9949 6.2628 -0.8711
38 1 5.4155 7.0706 -0.7248
39 1 5.4244 6.6455 1.7182
40 1 7.0038 5.8377 1.5718
41 1 7.9942 7.9350 0.6939
42 1 6.4146 8.7421 0.8404
43 1 8.8087 10.5391 5.9158
44 1 6.6467 4.1108 1.0187
45 1 7.1242 3.8552 -0.6744
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000459551996.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 19:22:15
Heat of formation + Delta-G solvation = -63.218269 kcal
Electronic energy + Delta-G solvation = -25682.492418 eV
Core-core repulsion = 21983.757454 eV
Total energy + Delta-G solvation = -3698.734964 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 335.134 amu
Computer time = 1.57 seconds
Orbital eigenvalues (eV)
-41.15230 -39.85915 -37.80549 -36.79707 -33.88036 -32.78409 -32.43840 -31.05864
-29.92732 -27.95806 -26.45988 -25.55775 -24.38746 -23.76680 -23.26762 -21.43811
-21.07057 -19.23288 -17.91608 -17.47581 -17.27106 -16.69779 -16.16978 -16.02247
-15.68030 -14.94025 -14.81576 -14.66021 -14.50748 -14.45014 -13.93801 -13.85254
-13.34221 -13.27086 -13.00106 -12.69752 -12.61720 -12.33443 -12.26436 -11.98402
-11.86945 -11.59564 -11.53989 -11.39947 -11.10943 -11.08200 -10.85350 -10.72704
-10.65526 -10.34175 -10.16583 -9.72517 -9.22053 -9.07580 -8.85142 -8.38258
-8.15111 -6.54453 -6.23830 -3.94276 0.42421 1.07545 2.26994 2.37079
3.20267 3.21836 3.29452 3.44912 3.56937 3.88094 4.21449 4.35515
4.45683 4.47295 4.70232 4.76583 4.84689 4.86223 5.04594 5.09781
5.12414 5.17725 5.18925 5.25884 5.28669 5.40365 5.45917 5.50654
5.60241 5.62165 5.67554 5.74293 5.83579 5.88422 5.99744 6.01861
6.06236 6.09901 6.15880 6.31846 6.36278 6.48825 6.58412 6.69794
6.99545 7.05287 7.46308 7.60079 8.36143 9.22683 10.84432
Molecular weight = 335.13amu
Principal moments of inertia in cm(-1)
A = 0.023159 B = 0.002020 C = 0.001958
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1208.766124 B =13856.074247 C =14295.675514
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.037 3.963
2 O -0.358 6.358
3 C 0.507 3.493
4 O -0.498 6.498
5 C -0.136 4.136
6 C -0.064 4.064
7 C -0.139 4.139
8 C -0.077 4.077
9 C -0.086 4.086
10 C 0.002 3.998
11 C -0.083 4.083
12 C 0.044 3.956
13 N -0.531 5.531
14 C 0.056 3.944
15 C -0.136 4.136
16 C -0.108 4.108
17 S -0.138 6.138
18 C -0.514 4.514
19 H 0.073 0.927
20 C 0.070 3.930
21 N -0.870 5.870
22 Si 0.919 3.081
23 H -0.271 1.271
24 H -0.280 1.280
25 H -0.280 1.280
26 C 0.086 3.914
27 H 0.064 0.936
28 H 0.064 0.936
29 H 0.101 0.899
30 H 0.136 0.864
31 H 0.131 0.869
32 H 0.131 0.869
33 H 0.089 0.911
34 H 0.104 0.896
35 H 0.046 0.954
36 H 0.084 0.916
37 H 0.076 0.924
38 H 0.079 0.921
39 H 0.068 0.932
40 H 0.065 0.935
41 H 0.060 0.940
42 H 0.061 0.939
43 H 0.266 0.734
44 H 0.061 0.939
45 H 0.090 0.910
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -11.139 -22.952 -12.499 28.409
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.057 4.057
2 O -0.275 6.275
3 C 0.353 3.647
4 O -0.387 6.387
5 C -0.138 4.138
6 C -0.082 4.082
7 C -0.157 4.157
8 C -0.095 4.095
9 C -0.087 4.087
10 C 0.001 3.999
11 C -0.120 4.120
12 C -0.084 4.084
13 N -0.253 5.253
14 C -0.073 4.073
15 C -0.176 4.176
16 C -0.258 4.258
17 S 0.090 5.910
18 C -0.663 4.663
19 H 0.091 0.909
20 C -0.139 4.139
21 N -0.506 5.506
22 Si 0.745 3.255
23 H -0.196 1.196
24 H -0.206 1.206
25 H -0.206 1.206
26 C -0.041 4.041
27 H 0.083 0.917
28 H 0.082 0.918
29 H 0.120 0.880
30 H 0.154 0.846
31 H 0.149 0.851
32 H 0.149 0.851
33 H 0.107 0.893
34 H 0.122 0.878
35 H 0.064 0.936
36 H 0.102 0.898
37 H 0.094 0.906
38 H 0.098 0.902
39 H 0.086 0.914
40 H 0.084 0.916
41 H 0.079 0.921
42 H 0.079 0.921
43 H 0.076 0.924
44 H 0.079 0.921
45 H 0.108 0.892
Dipole moment (debyes) X Y Z Total
from point charges -11.702 -23.307 -11.876 28.657
hybrid contribution 0.890 1.862 -0.261 2.080
sum -10.812 -21.445 -12.136 26.909
Atomic orbital electron populations
1.23277 0.75926 1.03722 1.02748 1.86533 1.23588 1.32848 1.84500
1.21255 0.89166 0.81372 0.72889 1.90811 1.66974 1.35324 1.45598
1.18992 0.88828 0.94516 1.11418 1.21369 0.94033 0.97597 0.95189
1.21033 0.94309 0.97911 1.02418 1.21382 1.00455 0.91736 0.95934
1.19614 0.92443 0.95427 1.01175 1.19703 0.93257 0.93708 0.93217
1.20954 0.96982 0.89929 1.04091 1.22309 0.91380 0.98887 0.95844
1.62649 1.05595 1.03344 1.53747 1.22324 0.99248 0.89779 0.95923
1.21965 1.01135 0.97285 0.97186 1.23173 1.01494 0.98001 1.03114
1.84639 1.77257 1.26866 1.02251 1.22727 1.43752 1.03988 0.95794
0.90885 1.25029 0.95711 0.98591 0.94563 1.70035 1.44502 1.38182
0.97836 0.86107 0.78917 0.82062 0.78403 1.19584 1.20574 1.20573
1.21039 0.94968 0.87459 1.00681 0.91738 0.91765 0.88031 0.84619
0.85064 0.85143 0.89301 0.87845 0.93604 0.89787 0.90554 0.90250
0.91362 0.91601 0.92126 0.92068 0.92377 0.92103 0.89154
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.04 0.23 10.56 101.05 1.07 1.30 16
2 O -0.36 -3.33 9.80 -40.53 -0.40 -3.73 16
3 C 0.51 5.72 7.85 34.61 0.27 5.99 16
4 O -0.50 -6.49 12.92 -19.24 -0.25 -6.74 16
5 C -0.14 -1.49 5.88 -104.89 -0.62 -2.11 16
6 C -0.06 -0.56 9.61 -39.23 -0.38 -0.94 16
7 C -0.14 -1.10 10.03 -39.72 -0.40 -1.50 16
8 C -0.08 -0.68 9.64 -39.38 -0.38 -1.06 16
9 C -0.09 -0.95 5.79 -104.66 -0.61 -1.56 16
10 C 0.00 0.02 5.80 -104.20 -0.60 -0.58 16
11 C -0.08 -1.00 4.49 -27.94 -0.13 -1.13 16
12 C 0.04 0.54 4.57 -3.73 -0.02 0.52 16
13 N -0.53 -6.58 4.90 -236.17 -1.16 -7.73 16
14 C 0.06 0.73 5.32 -3.82 -0.02 0.71 16
15 C -0.14 -2.16 4.52 -26.73 -0.12 -2.28 16
16 C -0.11 -2.16 5.67 37.16 0.21 -1.95 16
17 S -0.14 -3.63 21.44 -107.50 -2.30 -5.93 16
18 C -0.51 -14.81 9.50 30.94 0.29 -14.51 16
19 H 0.07 2.04 7.80 -52.48 -0.41 1.63 16
20 C 0.07 2.00 5.49 -17.43 -0.10 1.90 16
21 N -0.87 -26.11 13.22 55.49 0.73 -25.38 16
22 Si 0.92 21.62 29.55 -169.99 -5.02 16.60 16
23 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16
24 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16
25 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16
26 C 0.09 0.98 5.06 -5.15 -0.03 0.95 16
27 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16
28 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16
29 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16
30 H 0.14 0.94 7.60 -52.49 -0.40 0.54 16
31 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16
32 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16
33 H 0.09 1.12 8.08 -51.93 -0.42 0.70 16
34 H 0.10 1.32 5.98 -51.93 -0.31 1.01 16
35 H 0.05 0.60 7.08 -51.93 -0.37 0.24 16
36 H 0.08 1.01 8.03 -51.93 -0.42 0.59 16
37 H 0.08 0.95 8.12 -51.93 -0.42 0.52 16
38 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16
39 H 0.07 1.12 6.70 -51.93 -0.35 0.77 16
40 H 0.07 1.06 6.46 -51.93 -0.34 0.73 16
41 H 0.06 1.19 8.14 -51.92 -0.42 0.77 16
42 H 0.06 1.21 8.14 -51.92 -0.42 0.79 16
43 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16
44 H 0.06 0.74 6.27 -51.93 -0.33 0.41 16
45 H 0.09 0.91 8.13 -51.93 -0.42 0.49 16
LS Contribution 376.47 15.07 5.67 5.67
Total: -1.00 -32.97 376.47 -10.96 -43.93
By element:
Atomic # 1 Polarization: 6.23 SS G_CDS: -6.69 Total: -0.46 kcal
Atomic # 6 Polarization: -14.69 SS G_CDS: -1.54 Total: -16.23 kcal
Atomic # 7 Polarization: -32.69 SS G_CDS: -0.42 Total: -33.11 kcal
Atomic # 8 Polarization: -9.83 SS G_CDS: -0.65 Total: -10.47 kcal
Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal
Atomic # 16 Polarization: -3.63 SS G_CDS: -2.30 Total: -5.93 kcal
Total LS contribution 5.67 Total: 5.67 kcal
Total: -32.97 -10.96 -43.93 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000459551996.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -19.284 kcal
(2) G-P(sol) polarization free energy of solvation -32.974 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.258 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.960 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.934 kcal
(6) G-S(sol) free energy of system = (1) + (5) -63.218 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.57 seconds