Wall clock time and date at job start Tue Mar 31 2020 19:22:14
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.45196 * 1
3 3 C 1.34715 * 116.99791 * 2 1
4 4 O 1.21462 * 119.99987 * 359.97438 * 3 2 1
5 5 C 1.47727 * 119.99550 * 179.97438 * 3 2 1
6 6 C 1.39475 * 119.98500 * 359.72528 * 5 3 2
7 7 C 1.37928 * 119.65612 * 179.77294 * 6 5 3
8 8 C 1.38175 * 120.03601 * 0.58616 * 7 6 5
9 9 C 1.38856 * 120.69834 * 359.73963 * 8 7 6
10 10 C 1.37574 * 119.81866 * 359.84232 * 9 8 7
11 11 C 1.50694 * 121.74116 * 180.52822 * 10 9 8
12 12 C 1.52901 * 109.97356 * 343.06363 * 11 10 9
13 13 N 1.47167 * 108.48955 * 50.30156 * 12 11 10
14 14 C 1.46895 * 111.00164 * 165.41227 * 13 12 11
15 15 C 1.53006 * 109.47214 * 56.93085 * 14 13 12
16 16 C 1.52995 * 109.47336 * 180.02562 * 15 14 13
17 17 S 1.81005 * 109.46879 * 180.02562 * 16 15 14
18 18 C 1.76209 * 99.99826 * 179.97438 * 17 16 15
19 19 H 1.08003 * 119.99455 * 0.02562 * 18 17 16
20 20 C 1.38797 * 119.99947 * 179.97438 * 18 17 16
21 21 N 1.31630 * 119.99965 * 0.02562 * 20 18 17
22 22 Si 1.86802 * 119.99795 * 179.97438 * 20 18 17
23 23 H 1.48494 * 109.47032 * 0.02562 * 22 20 18
24 24 H 1.48505 * 109.46962 * 120.00393 * 22 20 18
25 25 H 1.48501 * 109.46827 * 240.00329 * 22 20 18
26 26 C 1.46633 * 110.24137 * 288.82749 * 13 12 11
27 27 H 1.08996 * 109.47465 * 300.00039 * 1 2 3
28 28 H 1.08999 * 109.47008 * 60.00049 * 1 2 3
29 29 H 1.09005 * 109.47352 * 180.02562 * 1 2 3
30 30 H 1.07999 * 120.17216 * 0.02562 * 6 5 3
31 31 H 1.08001 * 119.97981 * 180.31235 * 7 6 5
32 32 H 1.07997 * 119.65240 * 179.72271 * 8 7 6
33 33 H 1.08999 * 109.38715 * 103.21981 * 11 10 9
34 34 H 1.08995 * 109.38661 * 222.91131 * 11 10 9
35 35 H 1.09000 * 109.63937 * 290.59746 * 12 11 10
36 36 H 1.09000 * 109.79485 * 170.09297 * 12 11 10
37 37 H 1.08997 * 109.47494 * 176.92906 * 14 13 12
38 38 H 1.09003 * 109.47228 * 296.93436 * 14 13 12
39 39 H 1.09003 * 109.47184 * 300.00394 * 15 14 13
40 40 H 1.09003 * 109.46736 * 60.00050 * 15 14 13
41 41 H 1.08997 * 109.47244 * 299.99743 * 16 15 14
42 42 H 1.08994 * 109.47510 * 59.99956 * 16 15 14
43 43 H 0.96997 * 119.99836 * 179.97438 * 21 20 18
44 44 H 1.08997 * 109.26818 * 292.33109 * 26 13 12
45 45 H 1.08999 * 109.23512 * 172.84482 * 26 13 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4520 0.0000 0.0000
3 6 2.0635 1.2003 0.0000
4 8 1.4019 2.2190 -0.0005
5 6 3.5388 1.2776 0.0006
6 6 4.2980 0.1076 0.0069
7 6 5.6750 0.1876 0.0026
8 6 6.2961 1.4219 0.0044
9 6 5.5482 2.5919 0.0050
10 6 4.1740 2.5253 0.0006
11 6 3.3202 3.7670 -0.0108
12 6 4.1556 4.9791 0.4027
13 7 5.3865 4.9946 -0.4039
14 6 6.0609 6.2962 -0.3101
15 6 6.3584 6.6120 1.1572
16 6 7.0602 7.9680 1.2549
17 16 7.4127 8.3411 2.9906
18 6 8.1979 9.9086 2.8133
19 1 8.3266 10.3400 1.8315
20 6 8.6499 10.5892 3.9353
21 7 8.4925 10.0636 5.1317
22 14 9.4829 12.2506 3.7471
23 1 9.5371 12.6172 2.3091
24 1 8.7110 13.2784 4.4908
25 1 10.8624 12.1771 4.2920
26 6 6.2796 3.9088 0.0125
27 1 -0.3634 0.5138 0.8899
28 1 -0.3633 0.5138 -0.8900
29 1 -0.3634 -1.0277 0.0005
30 1 3.8103 -0.8560 0.0110
31 1 6.2680 -0.7150 0.0024
32 1 7.3746 1.4774 0.0056
33 1 2.9251 3.9252 -1.0142
34 1 2.4923 3.6432 0.6871
35 1 4.4113 4.9045 1.4596
36 1 3.5906 5.8943 0.2263
37 1 6.9949 6.2628 -0.8711
38 1 5.4155 7.0706 -0.7248
39 1 5.4244 6.6455 1.7182
40 1 7.0038 5.8377 1.5718
41 1 7.9942 7.9350 0.6939
42 1 6.4146 8.7421 0.8404
43 1 8.8087 10.5391 5.9158
44 1 6.6467 4.1108 1.0187
45 1 7.1242 3.8552 -0.6744
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000459551996.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 19:22:14
Heat of formation + Delta-G solvation = -82.045983 kcal
Electronic energy + Delta-G solvation = -25683.308849 eV
Core-core repulsion = 21983.757454 eV
Total energy + Delta-G solvation = -3699.551395 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 335.134 amu
Computer time = 0.72 seconds
Orbital eigenvalues (eV)
-41.95744 -40.69548 -38.72206 -37.59067 -34.99095 -34.60737 -33.63062 -32.12663
-30.75586 -28.58619 -27.93561 -27.29421 -25.24064 -24.71213 -24.34312 -22.54369
-21.85248 -20.20640 -19.55007 -18.69409 -18.04433 -17.46546 -17.07677 -16.91186
-16.86855 -16.67748 -16.09493 -15.93060 -15.69688 -15.20392 -15.14785 -14.88561
-14.55371 -14.10767 -13.97481 -13.92894 -13.58995 -13.34970 -13.24210 -13.13972
-12.97553 -12.93836 -12.76309 -12.64389 -12.54728 -12.42439 -12.33559 -11.81303
-11.63620 -11.60118 -11.51912 -11.16683 -11.05397 -10.36516 -9.98349 -9.65093
-9.24557 -8.68710 -8.38862 -6.15385 -0.33628 0.33632 1.30744 1.37312
1.47391 1.48708 1.67364 1.74899 2.27172 2.70510 2.88970 2.95416
3.30195 3.57810 3.64808 3.74343 3.91709 4.02080 4.05312 4.12184
4.22796 4.29861 4.30565 4.33331 4.37426 4.40633 4.48708 4.55101
4.63075 4.70115 4.72038 4.77403 4.81266 4.90063 4.92471 4.94857
5.08726 5.12183 5.26053 5.28419 5.30124 5.38834 5.43632 5.55271
5.85838 5.98254 6.07042 6.17127 6.66341 7.03506 8.70727
Molecular weight = 335.13amu
Principal moments of inertia in cm(-1)
A = 0.023159 B = 0.002020 C = 0.001958
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1208.766124 B =13856.074247 C =14295.675514
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.030 3.970
2 O -0.357 6.357
3 C 0.505 3.495
4 O -0.526 6.526
5 C -0.154 4.154
6 C -0.059 4.059
7 C -0.131 4.131
8 C -0.075 4.075
9 C -0.103 4.103
10 C -0.022 4.022
11 C -0.073 4.073
12 C 0.046 3.954
13 N -0.529 5.529
14 C 0.067 3.933
15 C -0.122 4.122
16 C -0.083 4.083
17 S -0.206 6.206
18 C -0.535 4.535
19 H 0.074 0.926
20 C 0.013 3.987
21 N -0.908 5.908
22 Si 0.995 3.005
23 H -0.262 1.262
24 H -0.272 1.272
25 H -0.271 1.271
26 C 0.086 3.914
27 H 0.060 0.940
28 H 0.062 0.938
29 H 0.135 0.865
30 H 0.156 0.844
31 H 0.166 0.834
32 H 0.154 0.846
33 H 0.079 0.921
34 H 0.091 0.909
35 H 0.033 0.967
36 H 0.084 0.916
37 H 0.090 0.910
38 H 0.084 0.916
39 H 0.058 0.942
40 H 0.063 0.937
41 H 0.066 0.934
42 H 0.062 0.938
43 H 0.271 0.729
44 H 0.051 0.949
45 H 0.106 0.894
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -10.185 -24.222 -13.930 29.740
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.063 4.063
2 O -0.274 6.274
3 C 0.352 3.648
4 O -0.417 6.417
5 C -0.155 4.155
6 C -0.077 4.077
7 C -0.149 4.149
8 C -0.093 4.093
9 C -0.103 4.103
10 C -0.022 4.022
11 C -0.110 4.110
12 C -0.082 4.082
13 N -0.251 5.251
14 C -0.062 4.062
15 C -0.162 4.162
16 C -0.233 4.233
17 S 0.022 5.978
18 C -0.683 4.683
19 H 0.092 0.908
20 C -0.192 4.192
21 N -0.545 5.545
22 Si 0.817 3.183
23 H -0.186 1.186
24 H -0.198 1.198
25 H -0.196 1.196
26 C -0.042 4.042
27 H 0.079 0.921
28 H 0.081 0.919
29 H 0.153 0.847
30 H 0.174 0.826
31 H 0.183 0.817
32 H 0.172 0.828
33 H 0.097 0.903
34 H 0.109 0.891
35 H 0.051 0.949
36 H 0.102 0.898
37 H 0.108 0.892
38 H 0.102 0.898
39 H 0.077 0.923
40 H 0.082 0.918
41 H 0.085 0.915
42 H 0.081 0.919
43 H 0.080 0.920
44 H 0.069 0.931
45 H 0.124 0.876
Dipole moment (debyes) X Y Z Total
from point charges -10.759 -24.608 -13.315 29.976
hybrid contribution 0.526 2.097 0.151 2.167
sum -10.232 -22.511 -13.164 28.013
Atomic orbital electron populations
1.23570 0.74342 1.05875 1.02532 1.86519 1.25148 1.31704 1.83999
1.21450 0.89509 0.81540 0.72259 1.90793 1.67594 1.36272 1.47065
1.19128 0.88883 0.95085 1.12438 1.21668 0.94568 0.97590 0.93875
1.21438 0.94118 0.98789 1.00522 1.21701 1.01624 0.91312 0.94642
1.19694 0.92248 0.96040 1.02344 1.19755 0.93791 0.93786 0.94891
1.20762 0.96692 0.90398 1.03101 1.22269 0.91646 0.99166 0.95093
1.62682 1.05626 1.03288 1.53548 1.22237 1.00079 0.90375 0.93525
1.21882 1.00049 0.94834 0.99459 1.23112 1.02137 1.00074 0.97935
1.84673 1.77501 1.26822 1.08804 1.23068 1.44236 1.04876 0.96123
0.90832 1.26098 0.96176 1.02864 0.94041 1.70167 1.45479 1.40064
0.98771 0.84949 0.77858 0.76604 0.78858 1.18557 1.19775 1.19616
1.21100 0.95235 0.87375 1.00458 0.92099 0.91925 0.84674 0.82624
0.81695 0.82806 0.90289 0.89066 0.94873 0.89754 0.89170 0.89773
0.92288 0.91798 0.91515 0.91884 0.92004 0.93143 0.87571
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.35 10.56 113.37 1.20 1.55 16
2 O -0.36 -6.35 9.80 -56.24 -0.55 -6.91 16
3 C 0.51 11.48 7.85 70.33 0.55 12.03 16
4 O -0.53 -14.31 12.92 19.96 0.26 -14.05 16
5 C -0.15 -3.31 5.88 -20.04 -0.12 -3.42 16
6 C -0.06 -0.91 9.61 22.49 0.22 -0.69 16
7 C -0.13 -1.66 10.03 22.18 0.22 -1.43 16
8 C -0.07 -1.14 9.64 22.40 0.22 -0.92 16
9 C -0.10 -2.16 5.79 -19.89 -0.12 -2.28 16
10 C -0.02 -0.51 5.80 -19.59 -0.11 -0.63 16
11 C -0.07 -1.84 4.49 29.81 0.13 -1.71 16
12 C 0.05 1.17 4.57 86.22 0.39 1.57 16
13 N -0.53 -12.79 4.90 -901.11 -4.41 -17.21 16
14 C 0.07 1.67 5.32 86.31 0.46 2.13 16
15 C -0.12 -3.85 4.52 30.59 0.14 -3.71 16
16 C -0.08 -3.29 5.67 71.98 0.41 -2.89 16
17 S -0.21 -11.08 21.44 -56.49 -1.21 -12.29 16
18 C -0.54 -31.12 9.50 67.95 0.65 -30.48 16
19 H 0.07 4.12 7.80 -2.91 -0.02 4.09 16
20 C 0.01 0.74 5.49 84.86 0.47 1.21 16
21 N -0.91 -55.31 13.22 21.65 0.29 -55.02 16
22 Si 1.00 44.20 29.55 68.60 2.03 46.23 16
23 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16
24 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16
25 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16
26 C 0.09 1.86 5.06 85.59 0.43 2.29 16
27 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16
28 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16
29 H 0.14 0.64 8.14 -2.38 -0.02 0.62 16
30 H 0.16 1.71 7.60 -2.91 -0.02 1.69 16
31 H 0.17 0.98 8.06 -2.91 -0.02 0.96 16
32 H 0.15 1.58 8.06 -2.91 -0.02 1.56 16
33 H 0.08 2.09 8.08 -2.39 -0.02 2.07 16
34 H 0.09 2.50 5.98 -2.39 -0.01 2.49 16
35 H 0.03 0.92 7.08 -2.39 -0.02 0.90 16
36 H 0.08 2.08 8.03 -2.39 -0.02 2.06 16
37 H 0.09 2.03 8.12 -2.39 -0.02 2.01 16
38 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16
39 H 0.06 1.97 6.70 -2.39 -0.02 1.96 16
40 H 0.06 2.05 6.46 -2.39 -0.02 2.04 16
41 H 0.07 2.56 8.14 -2.40 -0.02 2.55 16
42 H 0.06 2.47 8.14 -2.40 -0.02 2.45 16
43 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16
44 H 0.05 1.20 6.27 -2.39 -0.01 1.18 16
45 H 0.11 1.93 8.13 -2.39 -0.02 1.91 16
Total: -1.00 -72.83 376.47 2.52 -70.31
By element:
Atomic # 1 Polarization: 15.34 SS G_CDS: 0.99 Total: 16.33 kcal
Atomic # 6 Polarization: -32.52 SS G_CDS: 5.14 Total: -27.39 kcal
Atomic # 7 Polarization: -68.10 SS G_CDS: -4.13 Total: -72.23 kcal
Atomic # 8 Polarization: -20.66 SS G_CDS: -0.29 Total: -20.96 kcal
Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.23 kcal
Atomic # 16 Polarization: -11.08 SS G_CDS: -1.21 Total: -12.29 kcal
Total: -72.83 2.52 -70.31 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000459551996.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -11.739 kcal
(2) G-P(sol) polarization free energy of solvation -72.826 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.565 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.519 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.307 kcal
(6) G-S(sol) free energy of system = (1) + (5) -82.046 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.72 seconds