Wall clock time and date at job start Tue Mar 31 2020 19:10:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35951 * 117.00348 * 2 1 4 4 C 1.38081 * 120.00041 * 0.24170 * 3 2 1 5 5 C 1.39973 * 119.83838 * 180.22768 * 4 3 2 6 6 C 1.46965 * 120.07884 * 179.78609 * 5 4 3 7 7 C 1.35025 * 120.00265 * 179.72158 * 6 5 4 8 8 C 1.46253 * 120.00399 * 180.02562 * 7 6 5 9 9 O 1.21725 * 119.99627 * 359.97438 * 8 7 6 10 10 N 1.34773 * 120.00014 * 180.02562 * 8 7 6 11 11 C 1.47066 * 136.05407 * 179.97438 * 10 8 7 12 12 C 1.53499 * 87.98363 * 152.84536 * 11 10 8 13 13 C 1.52999 * 114.20781 * 139.65637 * 12 11 10 14 14 F 1.39903 * 109.47276 * 64.99965 * 13 12 11 15 15 C 1.47066 * 136.05839 * 359.94711 * 10 8 7 16 16 C 1.40024 * 119.84212 * 359.51164 * 5 4 3 17 17 C 1.37650 * 120.00308 * 0.25180 * 16 5 4 18 18 C 1.39062 * 120.15790 * 0.02562 * 17 16 5 19 19 O 1.35609 * 119.91677 * 179.97438 * 18 17 16 20 20 C 1.34753 * 117.00425 * 354.37425 * 19 18 17 21 21 H 1.07997 * 120.00214 * 5.06026 * 20 19 18 22 22 C 1.38715 * 120.00207 * 185.06195 * 20 19 18 23 23 N 1.31517 * 119.99770 * 0.02562 * 22 20 19 24 24 Si 1.86794 * 119.99954 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.47536 * 60.00380 * 24 22 20 26 26 H 1.48504 * 109.47094 * 180.02562 * 24 22 20 27 27 H 1.48502 * 109.47483 * 300.00047 * 24 22 20 28 28 H 1.09003 * 109.47857 * 179.97438 * 1 2 3 29 29 H 1.09009 * 109.47014 * 299.99809 * 1 2 3 30 30 H 1.09003 * 109.47233 * 59.99088 * 1 2 3 31 31 H 1.07997 * 120.08068 * 0.02562 * 4 3 2 32 32 H 1.08001 * 119.99806 * 359.72517 * 6 5 4 33 33 H 1.08003 * 119.99412 * 0.02562 * 7 6 5 34 34 H 1.09000 * 113.46858 * 267.62416 * 11 10 8 35 35 H 1.08999 * 113.47035 * 38.06739 * 11 10 8 36 36 H 1.08999 * 114.20454 * 272.48251 * 12 11 10 37 37 H 1.08996 * 109.47287 * 185.00174 * 13 12 11 38 38 H 1.09005 * 109.47117 * 304.99682 * 13 12 11 39 39 H 1.08998 * 113.46827 * 321.93675 * 15 10 8 40 40 H 1.08997 * 113.46751 * 92.38099 * 15 10 8 41 41 H 1.08004 * 120.00464 * 180.23023 * 16 5 4 42 42 H 1.07996 * 119.92324 * 180.02562 * 17 16 5 43 43 H 0.97000 * 119.99644 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 1.2943 2.3694 0.0050 5 6 1.9333 3.6147 0.0002 6 6 1.1382 4.8507 0.0008 7 6 1.7562 6.0512 0.0018 8 6 0.9649 7.2811 0.0029 9 8 -0.2509 7.2225 0.0025 10 7 1.5819 8.4793 0.0034 11 6 1.1593 9.8880 0.0041 12 6 2.4822 10.2282 0.7043 13 6 3.1442 11.5137 0.2042 14 9 2.3304 12.6086 0.5145 15 6 2.9740 8.9536 0.0040 16 6 3.3320 3.6801 0.0006 17 6 4.0753 2.5215 0.0005 18 6 3.4405 1.2843 -0.0005 19 8 4.1775 0.1460 -0.0011 20 6 5.5131 0.2818 -0.1183 21 1 5.9573 1.2662 -0.1241 22 6 6.3174 -0.8426 -0.2317 23 7 5.7764 -2.0414 -0.2253 24 14 8.1686 -0.6542 -0.3949 25 1 8.7018 0.0492 0.7992 26 1 8.7954 -1.9963 -0.5003 27 1 8.4804 0.1343 -1.6141 28 1 -0.3635 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5140 -0.8899 31 1 0.2157 2.3144 0.0094 32 1 0.0594 4.7987 0.0005 33 1 2.8350 6.1030 0.0018 34 1 1.0741 10.3161 -0.9947 35 1 0.2806 10.0773 0.6207 36 1 2.4443 10.1550 1.7911 37 1 4.1144 11.6340 0.6861 38 1 3.2797 11.4562 -0.8759 39 1 3.6385 8.3483 0.6206 40 1 3.3718 9.1331 -0.9947 41 1 3.8279 4.6397 0.0007 42 1 5.1540 2.5735 0.0013 43 1 6.3388 -2.8277 -0.3049 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493466452.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:10:45 Heat of formation + Delta-G solvation = -64.312402 kcal Electronic energy + Delta-G solvation = -27151.936512 eV Core-core repulsion = 22886.940927 eV Total energy + Delta-G solvation = -4264.995585 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.137 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -48.00995 -40.54558 -39.73886 -38.07825 -37.70468 -36.53685 -33.08542 -32.30360 -31.42402 -29.77827 -28.79058 -27.12629 -26.31863 -26.28642 -25.47621 -23.19764 -21.82949 -21.34018 -20.13141 -18.71025 -18.23304 -17.85254 -17.07635 -16.84996 -16.55564 -16.10278 -16.01493 -15.56967 -15.23286 -15.17825 -14.74022 -14.53044 -14.19192 -14.02344 -13.80784 -13.62492 -13.50050 -13.28540 -12.98297 -12.80930 -12.39170 -12.18252 -11.84290 -11.74855 -11.56397 -11.47472 -11.39492 -11.12180 -11.09413 -10.97563 -10.81490 -10.73982 -10.54515 -9.84654 -9.62113 -9.46159 -8.96962 -8.82200 -8.01824 -6.95079 -6.64880 -4.16147 0.96828 2.07881 2.47432 2.65962 3.02433 3.04288 3.07171 3.47464 3.62167 3.80222 3.91582 4.15436 4.26087 4.43348 4.44425 4.58446 4.73490 4.87063 4.97919 4.99823 5.03169 5.07410 5.18555 5.20010 5.30862 5.39684 5.48980 5.52528 5.55464 5.64566 5.67791 5.73567 5.81674 5.96432 6.17542 6.39573 6.44520 6.54980 6.81538 6.96662 7.05058 7.21950 7.43390 7.58780 7.75409 8.04621 8.21100 8.77869 9.46589 10.50759 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.012757 B = 0.002271 C = 0.001937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2194.399522 B =12324.012298 C =14454.389710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.303 6.303 3 C 0.052 3.948 4 C -0.136 4.136 5 C -0.167 4.167 6 C 0.038 3.962 7 C -0.274 4.274 8 C 0.586 3.414 9 O -0.554 6.554 10 N -0.650 5.650 11 C 0.112 3.888 12 C -0.165 4.165 13 C 0.075 3.925 14 F -0.215 7.215 15 C 0.112 3.888 16 C -0.058 4.058 17 C -0.225 4.225 18 C 0.149 3.851 19 O -0.146 6.146 20 C -0.391 4.391 21 H 0.097 0.903 22 C 0.042 3.958 23 N -0.844 5.844 24 Si 0.945 3.055 25 H -0.267 1.267 26 H -0.276 1.276 27 H -0.267 1.267 28 H 0.092 0.908 29 H 0.047 0.953 30 H 0.047 0.953 31 H 0.124 0.876 32 H 0.123 0.877 33 H 0.124 0.876 34 H 0.084 0.916 35 H 0.080 0.920 36 H 0.115 0.885 37 H 0.082 0.918 38 H 0.079 0.921 39 H 0.086 0.914 40 H 0.088 0.912 41 H 0.115 0.885 42 H 0.137 0.863 43 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.919 19.544 0.151 19.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.217 6.217 3 C 0.007 3.993 4 C -0.155 4.155 5 C -0.169 4.169 6 C 0.018 3.982 7 C -0.295 4.295 8 C 0.382 3.618 9 O -0.435 6.435 10 N -0.386 5.386 11 C -0.011 4.011 12 C -0.184 4.184 13 C 0.020 3.980 14 F -0.196 7.196 15 C -0.012 4.012 16 C -0.077 4.077 17 C -0.245 4.245 18 C 0.092 3.908 19 O -0.047 6.047 20 C -0.467 4.467 21 H 0.114 0.886 22 C -0.166 4.166 23 N -0.476 5.476 24 Si 0.769 3.231 25 H -0.192 1.192 26 H -0.201 1.201 27 H -0.192 1.192 28 H 0.111 0.889 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.142 0.858 32 H 0.140 0.860 33 H 0.141 0.859 34 H 0.102 0.898 35 H 0.099 0.901 36 H 0.134 0.866 37 H 0.101 0.899 38 H 0.098 0.902 39 H 0.105 0.895 40 H 0.107 0.893 41 H 0.133 0.867 42 H 0.155 0.845 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -3.573 18.554 0.156 18.895 hybrid contribution 0.718 0.328 -0.104 0.796 sum -2.854 18.882 0.052 19.096 Atomic orbital electron populations 1.22923 0.80137 1.03098 1.00437 1.86234 1.19598 1.26173 1.89701 1.18044 0.89375 0.84616 1.07269 1.20881 0.98628 0.90899 1.05089 1.18143 0.92774 0.91337 1.14624 1.22244 0.99158 0.90916 0.85905 1.22328 0.99744 0.91074 1.16331 1.17988 0.86972 0.81914 0.74917 1.90792 1.14129 1.86635 1.51899 1.49378 1.09147 1.04920 1.75111 1.22859 0.97605 0.80200 1.00426 1.23690 0.97943 0.94525 1.02283 1.21862 0.92940 0.81647 1.01573 1.92787 1.75687 1.56200 1.94908 1.22908 0.85576 0.92049 1.00627 1.20915 0.92478 0.97318 0.96960 1.20824 1.00695 0.90726 1.12232 1.18883 0.88273 0.87646 0.96028 1.83985 1.19725 1.25861 1.75080 1.21475 0.78376 0.95069 1.51745 0.88551 1.25424 1.00938 0.94139 0.96057 1.70037 1.36818 0.97855 1.42846 0.85709 0.79711 0.78245 0.79420 1.19218 1.20065 1.19220 0.88938 0.93435 0.93423 0.85826 0.85956 0.85857 0.89755 0.90124 0.86640 0.89930 0.90229 0.89535 0.89348 0.86700 0.84499 0.91486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 9.81 101.05 0.99 1.43 16 2 O -0.30 -6.42 10.28 -34.20 -0.35 -6.77 16 3 C 0.05 1.11 6.70 -39.13 -0.26 0.85 16 4 C -0.14 -2.43 8.77 -38.99 -0.34 -2.78 16 5 C -0.17 -2.88 5.87 -105.04 -0.62 -3.50 16 6 C 0.04 0.58 9.45 -37.19 -0.35 0.23 16 7 C -0.27 -3.88 9.25 -37.51 -0.35 -4.22 16 8 C 0.59 8.78 7.99 -13.04 -0.10 8.67 16 9 O -0.55 -10.27 17.01 5.17 0.09 -10.18 16 10 N -0.65 -7.29 3.69 -186.91 -0.69 -7.98 16 11 C 0.11 0.98 8.15 -8.50 -0.07 0.91 16 12 C -0.17 -0.99 4.46 -90.10 -0.40 -1.39 16 13 C 0.08 0.34 7.41 37.16 0.28 0.61 16 14 F -0.21 -1.68 17.31 2.25 0.04 -1.64 16 15 C 0.11 0.75 7.89 -8.49 -0.07 0.68 16 16 C -0.06 -1.01 9.40 -39.13 -0.37 -1.38 16 17 C -0.23 -4.58 9.14 -39.49 -0.36 -4.94 16 18 C 0.15 3.51 6.67 -38.76 -0.26 3.25 16 19 O -0.15 -4.05 9.52 -13.91 -0.13 -4.18 16 20 C -0.39 -10.36 9.48 30.91 0.29 -10.07 16 21 H 0.10 2.30 5.18 -52.49 -0.27 2.02 16 22 C 0.04 1.08 5.49 -17.51 -0.10 0.99 16 23 N -0.84 -23.75 13.67 55.48 0.76 -22.99 16 24 Si 0.95 19.24 29.55 -169.99 -5.02 14.22 16 25 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 26 H -0.28 -5.51 7.11 56.52 0.40 -5.11 16 27 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 28 H 0.09 1.16 8.14 -51.93 -0.42 0.73 16 29 H 0.05 0.62 7.65 -51.92 -0.40 0.22 16 30 H 0.05 0.62 7.67 -51.93 -0.40 0.22 16 31 H 0.12 1.87 6.28 -52.49 -0.33 1.54 16 32 H 0.12 1.87 7.52 -52.49 -0.39 1.47 16 33 H 0.12 1.52 5.97 -52.48 -0.31 1.21 16 34 H 0.08 0.63 8.10 -51.93 -0.42 0.21 16 35 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.12 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.08 0.23 8.14 -51.93 -0.42 -0.20 16 38 H 0.08 0.24 7.99 -51.93 -0.42 -0.17 16 39 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 40 H 0.09 0.44 8.00 -51.93 -0.42 0.02 16 41 H 0.12 1.63 6.15 -52.48 -0.32 1.31 16 42 H 0.14 2.69 5.62 -52.49 -0.29 2.39 16 43 H 0.28 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 373.43 15.07 5.63 5.63 Total: -1.00 -33.92 373.43 -6.99 -40.91 By element: Atomic # 1 Polarization: 8.88 SS G_CDS: -5.22 Total: 3.65 kcal Atomic # 6 Polarization: -8.57 SS G_CDS: -2.08 Total: -10.66 kcal Atomic # 7 Polarization: -31.04 SS G_CDS: 0.07 Total: -30.97 kcal Atomic # 8 Polarization: -20.74 SS G_CDS: -0.40 Total: -21.14 kcal Atomic # 9 Polarization: -1.68 SS G_CDS: 0.04 Total: -1.64 kcal Atomic # 14 Polarization: 19.24 SS G_CDS: -5.02 Total: 14.22 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -33.92 -6.99 -40.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493466452.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.402 kcal (2) G-P(sol) polarization free energy of solvation -33.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds