Wall clock time and date at job start Tue Mar 31 2020 19:10:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35951 * 117.00348 * 2 1 4 4 C 1.38081 * 120.00041 * 0.24170 * 3 2 1 5 5 C 1.39973 * 119.83838 * 180.22768 * 4 3 2 6 6 C 1.46965 * 120.07884 * 179.78609 * 5 4 3 7 7 C 1.35025 * 120.00265 * 179.72158 * 6 5 4 8 8 C 1.46253 * 120.00399 * 180.02562 * 7 6 5 9 9 O 1.21725 * 119.99627 * 359.97438 * 8 7 6 10 10 N 1.34773 * 120.00014 * 180.02562 * 8 7 6 11 11 C 1.47066 * 136.05407 * 179.97438 * 10 8 7 12 12 C 1.53499 * 87.98363 * 152.84536 * 11 10 8 13 13 C 1.52999 * 114.20781 * 139.65637 * 12 11 10 14 14 F 1.39903 * 109.47276 * 64.99965 * 13 12 11 15 15 C 1.47066 * 136.05839 * 359.94711 * 10 8 7 16 16 C 1.40024 * 119.84212 * 359.51164 * 5 4 3 17 17 C 1.37650 * 120.00308 * 0.25180 * 16 5 4 18 18 C 1.39062 * 120.15790 * 0.02562 * 17 16 5 19 19 O 1.35609 * 119.91677 * 179.97438 * 18 17 16 20 20 C 1.34753 * 117.00425 * 354.37425 * 19 18 17 21 21 H 1.07997 * 120.00214 * 5.06026 * 20 19 18 22 22 C 1.38715 * 120.00207 * 185.06195 * 20 19 18 23 23 N 1.31517 * 119.99770 * 0.02562 * 22 20 19 24 24 Si 1.86794 * 119.99954 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.47536 * 60.00380 * 24 22 20 26 26 H 1.48504 * 109.47094 * 180.02562 * 24 22 20 27 27 H 1.48502 * 109.47483 * 300.00047 * 24 22 20 28 28 H 1.09003 * 109.47857 * 179.97438 * 1 2 3 29 29 H 1.09009 * 109.47014 * 299.99809 * 1 2 3 30 30 H 1.09003 * 109.47233 * 59.99088 * 1 2 3 31 31 H 1.07997 * 120.08068 * 0.02562 * 4 3 2 32 32 H 1.08001 * 119.99806 * 359.72517 * 6 5 4 33 33 H 1.08003 * 119.99412 * 0.02562 * 7 6 5 34 34 H 1.09000 * 113.46858 * 267.62416 * 11 10 8 35 35 H 1.08999 * 113.47035 * 38.06739 * 11 10 8 36 36 H 1.08999 * 114.20454 * 272.48251 * 12 11 10 37 37 H 1.08996 * 109.47287 * 185.00174 * 13 12 11 38 38 H 1.09005 * 109.47117 * 304.99682 * 13 12 11 39 39 H 1.08998 * 113.46827 * 321.93675 * 15 10 8 40 40 H 1.08997 * 113.46751 * 92.38099 * 15 10 8 41 41 H 1.08004 * 120.00464 * 180.23023 * 16 5 4 42 42 H 1.07996 * 119.92324 * 180.02562 * 17 16 5 43 43 H 0.97000 * 119.99644 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 1.2943 2.3694 0.0050 5 6 1.9333 3.6147 0.0002 6 6 1.1382 4.8507 0.0008 7 6 1.7562 6.0512 0.0018 8 6 0.9649 7.2811 0.0029 9 8 -0.2509 7.2225 0.0025 10 7 1.5819 8.4793 0.0034 11 6 1.1593 9.8880 0.0041 12 6 2.4822 10.2282 0.7043 13 6 3.1442 11.5137 0.2042 14 9 2.3304 12.6086 0.5145 15 6 2.9740 8.9536 0.0040 16 6 3.3320 3.6801 0.0006 17 6 4.0753 2.5215 0.0005 18 6 3.4405 1.2843 -0.0005 19 8 4.1775 0.1460 -0.0011 20 6 5.5131 0.2818 -0.1183 21 1 5.9573 1.2662 -0.1241 22 6 6.3174 -0.8426 -0.2317 23 7 5.7764 -2.0414 -0.2253 24 14 8.1686 -0.6542 -0.3949 25 1 8.7018 0.0492 0.7992 26 1 8.7954 -1.9963 -0.5003 27 1 8.4804 0.1343 -1.6141 28 1 -0.3635 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5140 -0.8899 31 1 0.2157 2.3144 0.0094 32 1 0.0594 4.7987 0.0005 33 1 2.8350 6.1030 0.0018 34 1 1.0741 10.3161 -0.9947 35 1 0.2806 10.0773 0.6207 36 1 2.4443 10.1550 1.7911 37 1 4.1144 11.6340 0.6861 38 1 3.2797 11.4562 -0.8759 39 1 3.6385 8.3483 0.6206 40 1 3.3718 9.1331 -0.9947 41 1 3.8279 4.6397 0.0007 42 1 5.1540 2.5735 0.0013 43 1 6.3388 -2.8277 -0.3049 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493466452.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:10:44 Heat of formation + Delta-G solvation = -86.234163 kcal Electronic energy + Delta-G solvation = -27152.887111 eV Core-core repulsion = 22886.940927 eV Total energy + Delta-G solvation = -4265.946184 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.137 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -48.48226 -41.44538 -41.24862 -39.32832 -39.15161 -38.03095 -34.64216 -33.92919 -32.23971 -31.28274 -30.13978 -28.15523 -27.57715 -27.05941 -26.89934 -24.47011 -23.33181 -22.29132 -21.14792 -19.97229 -19.70610 -19.35108 -18.23309 -17.77248 -17.40280 -17.14858 -16.82170 -16.69150 -16.56427 -16.36748 -16.23199 -15.58087 -15.48561 -15.36326 -15.28345 -15.05287 -14.58849 -14.32997 -13.86127 -13.67199 -13.59172 -13.44256 -13.31887 -13.21886 -12.89230 -12.64926 -12.52122 -12.20316 -12.14694 -12.06958 -12.02648 -11.84339 -11.53836 -11.34268 -10.99570 -10.94879 -10.54147 -9.80458 -9.48277 -8.54618 -8.47084 -6.11522 -0.35502 0.53397 1.06746 1.37854 1.49846 1.54732 1.79721 2.17805 2.27790 2.54004 2.85157 3.07067 3.13715 3.33927 3.46940 3.71061 3.87891 3.90037 4.07009 4.09031 4.14776 4.30105 4.34832 4.35036 4.40676 4.41598 4.50325 4.54721 4.57760 4.61378 4.63502 4.69838 4.77751 4.89192 4.92449 5.06979 5.10232 5.22219 5.30119 5.47509 5.50036 5.74124 5.91111 5.97105 6.58107 6.64688 6.95279 7.09087 7.75156 8.74522 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.012757 B = 0.002271 C = 0.001937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2194.399522 B =12324.012298 C =14454.389710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.343 6.343 3 C 0.037 3.963 4 C -0.134 4.134 5 C -0.135 4.135 6 C 0.015 3.985 7 C -0.233 4.233 8 C 0.574 3.426 9 O -0.599 6.599 10 N -0.654 5.654 11 C 0.099 3.901 12 C -0.147 4.147 13 C 0.073 3.927 14 F -0.235 7.235 15 C 0.111 3.889 16 C -0.063 4.063 17 C -0.217 4.217 18 C 0.102 3.898 19 O -0.211 6.211 20 C -0.416 4.416 21 H 0.111 0.889 22 C -0.023 4.023 23 N -0.914 5.914 24 Si 1.022 2.978 25 H -0.253 1.253 26 H -0.276 1.276 27 H -0.254 1.254 28 H 0.110 0.890 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.154 0.846 32 H 0.125 0.875 33 H 0.152 0.848 34 H 0.100 0.900 35 H 0.063 0.937 36 H 0.114 0.886 37 H 0.107 0.893 38 H 0.100 0.900 39 H 0.102 0.898 40 H 0.117 0.883 41 H 0.158 0.842 42 H 0.140 0.860 43 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.285 24.257 -0.110 24.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.258 6.258 3 C -0.008 4.008 4 C -0.153 4.153 5 C -0.136 4.136 6 C -0.005 4.005 7 C -0.254 4.254 8 C 0.369 3.631 9 O -0.483 6.483 10 N -0.388 5.388 11 C -0.023 4.023 12 C -0.166 4.166 13 C 0.018 3.982 14 F -0.216 7.216 15 C -0.011 4.011 16 C -0.081 4.081 17 C -0.236 4.236 18 C 0.050 3.950 19 O -0.116 6.116 20 C -0.492 4.492 21 H 0.129 0.871 22 C -0.221 4.221 23 N -0.551 5.551 24 Si 0.840 3.160 25 H -0.177 1.177 26 H -0.200 1.200 27 H -0.178 1.178 28 H 0.128 0.872 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.171 0.829 32 H 0.142 0.858 33 H 0.169 0.831 34 H 0.118 0.882 35 H 0.082 0.918 36 H 0.132 0.868 37 H 0.125 0.875 38 H 0.118 0.882 39 H 0.120 0.880 40 H 0.134 0.866 41 H 0.175 0.825 42 H 0.157 0.843 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -2.955 23.388 -0.100 23.574 hybrid contribution 0.070 -0.492 -0.004 0.496 sum -2.885 22.897 -0.105 23.078 Atomic orbital electron populations 1.23275 0.77126 1.04992 1.02042 1.86189 1.22916 1.26836 1.89878 1.18377 0.89186 0.85764 1.07426 1.21243 1.00078 0.90082 1.03865 1.18493 0.93094 0.91815 1.10161 1.22133 0.99243 0.90472 0.88685 1.22651 1.00991 0.90397 1.11330 1.18136 0.86515 0.83295 0.75169 1.90779 1.16040 1.87531 1.53976 1.49530 1.11831 1.04762 1.72640 1.23160 0.98703 0.78921 1.01547 1.23556 0.95784 0.95334 1.01975 1.22080 0.93148 0.79794 1.03136 1.92753 1.76475 1.57271 1.95149 1.23272 0.83322 0.91832 1.02637 1.21275 0.92442 0.97949 0.96422 1.21040 1.01182 0.90677 1.10727 1.19585 0.89500 0.88204 0.97707 1.83976 1.20282 1.27807 1.79536 1.21965 0.78781 0.95965 1.52444 0.87140 1.26714 1.06271 0.93522 0.95607 1.70203 1.38668 0.98854 1.47372 0.84604 0.72913 0.78300 0.80138 1.17738 1.20040 1.17810 0.87192 0.91635 0.91701 0.82871 0.85759 0.83096 0.88220 0.91834 0.86826 0.87500 0.88172 0.87971 0.86559 0.82481 0.84283 0.91743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.58 9.81 113.37 1.11 1.69 16 2 O -0.34 -15.14 10.28 -79.02 -0.81 -15.95 16 3 C 0.04 1.63 6.70 22.57 0.15 1.78 16 4 C -0.13 -4.60 8.77 22.65 0.20 -4.40 16 5 C -0.13 -4.22 5.87 -20.14 -0.12 -4.34 16 6 C 0.01 0.40 9.45 23.82 0.23 0.62 16 7 C -0.23 -5.53 9.25 23.61 0.22 -5.31 16 8 C 0.57 15.28 7.99 86.33 0.69 15.97 16 9 O -0.60 -21.13 17.01 -4.43 -0.08 -21.21 16 10 N -0.65 -12.14 3.69 -863.47 -3.19 -15.33 16 11 C 0.10 1.43 8.15 83.18 0.68 2.11 16 12 C -0.15 -1.15 4.46 -10.45 -0.05 -1.19 16 13 C 0.07 0.33 7.41 71.98 0.53 0.87 16 14 F -0.24 -2.98 17.31 44.97 0.78 -2.20 16 15 C 0.11 0.89 7.89 83.19 0.66 1.54 16 16 C -0.06 -1.98 9.40 22.56 0.21 -1.77 16 17 C -0.22 -8.74 9.14 22.33 0.20 -8.54 16 18 C 0.10 5.03 6.67 22.80 0.15 5.18 16 19 O -0.21 -12.60 9.52 -6.44 -0.06 -12.66 16 20 C -0.42 -23.38 9.48 67.93 0.64 -22.74 16 21 H 0.11 5.48 5.18 -2.91 -0.02 5.46 16 22 C -0.02 -1.25 5.49 84.85 0.47 -0.78 16 23 N -0.91 -55.57 13.67 21.62 0.30 -55.27 16 24 Si 1.02 40.96 29.55 68.60 2.03 42.99 16 25 H -0.25 -9.38 7.11 99.48 0.71 -8.68 16 26 H -0.28 -10.80 7.11 99.48 0.71 -10.09 16 27 H -0.25 -9.43 7.11 99.48 0.71 -8.73 16 28 H 0.11 2.72 8.14 -2.39 -0.02 2.70 16 29 H 0.07 1.63 7.65 -2.38 -0.02 1.61 16 30 H 0.06 1.62 7.67 -2.39 -0.02 1.60 16 31 H 0.15 4.25 6.28 -2.91 -0.02 4.24 16 32 H 0.12 3.44 7.52 -2.91 -0.02 3.41 16 33 H 0.15 2.72 5.97 -2.91 -0.02 2.70 16 34 H 0.10 1.16 8.10 -2.39 -0.02 1.14 16 35 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.11 0.04 8.14 -2.39 -0.02 0.02 16 38 H 0.10 0.09 7.99 -2.38 -0.02 0.07 16 39 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 40 H 0.12 0.40 8.00 -2.39 -0.02 0.38 16 41 H 0.16 3.56 6.15 -2.91 -0.02 3.54 16 42 H 0.14 5.44 5.62 -2.91 -0.02 5.42 16 43 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 Total: -1.00 -83.02 373.43 6.00 -77.03 By element: Atomic # 1 Polarization: 20.85 SS G_CDS: 1.05 Total: 21.90 kcal Atomic # 6 Polarization: -25.28 SS G_CDS: 5.98 Total: -19.30 kcal Atomic # 7 Polarization: -67.71 SS G_CDS: -2.89 Total: -70.60 kcal Atomic # 8 Polarization: -48.86 SS G_CDS: -0.95 Total: -49.81 kcal Atomic # 9 Polarization: -2.98 SS G_CDS: 0.78 Total: -2.20 kcal Atomic # 14 Polarization: 40.96 SS G_CDS: 2.03 Total: 42.99 kcal Total: -83.02 6.00 -77.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493466452.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.209 kcal (2) G-P(sol) polarization free energy of solvation -83.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds