Wall clock time and date at job start Tue Mar 31 2020 19:10:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35953 * 116.99923 * 2 1 4 4 C 1.38074 * 119.99879 * 0.02562 * 3 2 1 5 5 C 1.39978 * 119.83593 * 179.97438 * 4 3 2 6 6 C 1.46974 * 120.07889 * 180.02562 * 5 4 3 7 7 C 1.35019 * 120.00278 * 135.31607 * 6 5 4 8 8 C 1.46260 * 120.00052 * 346.80633 * 7 6 5 9 9 O 1.21723 * 119.99779 * 353.09235 * 8 7 6 10 10 N 1.34771 * 119.99983 * 173.09361 * 8 7 6 11 11 C 1.47064 * 136.06021 * 359.63089 * 10 8 7 12 12 C 1.53756 * 87.89046 * 152.96354 * 11 10 8 13 13 C 1.52998 * 114.08952 * 139.77906 * 12 11 10 14 14 F 1.39896 * 109.47401 * 206.56071 * 13 12 11 15 15 C 1.47077 * 136.05600 * 180.02562 * 10 8 7 16 16 C 1.40028 * 119.84714 * 359.97438 * 5 4 3 17 17 C 1.37651 * 119.99512 * 0.02562 * 16 5 4 18 18 C 1.39060 * 120.16201 * 0.26933 * 17 16 5 19 19 O 1.35613 * 119.91913 * 179.70287 * 18 17 16 20 20 C 1.34760 * 117.00058 * 7.32569 * 19 18 17 21 21 H 1.08007 * 120.00043 * 6.21143 * 20 19 18 22 22 C 1.38709 * 120.00093 * 186.21649 * 20 19 18 23 23 N 1.31519 * 119.99726 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 120.00137 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.46955 * 59.99537 * 24 22 20 26 26 H 1.48497 * 109.47030 * 179.97438 * 24 22 20 27 27 H 1.48501 * 109.46935 * 299.99833 * 24 22 20 28 28 H 1.09001 * 109.46869 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47059 * 300.00040 * 1 2 3 30 30 H 1.08999 * 109.47082 * 60.00337 * 1 2 3 31 31 H 1.07996 * 120.08155 * 359.95358 * 4 3 2 32 32 H 1.08002 * 119.99633 * 315.31954 * 6 5 4 33 33 H 1.07996 * 120.00153 * 166.80685 * 7 6 5 34 34 H 1.09004 * 113.46534 * 267.69356 * 11 10 8 35 35 H 1.08998 * 113.46738 * 38.13002 * 11 10 8 36 36 H 1.09001 * 114.56941 * 272.66503 * 12 11 10 37 37 H 1.08998 * 109.46881 * 326.56376 * 13 12 11 38 38 H 1.09000 * 109.47033 * 86.55972 * 13 12 11 39 39 H 1.09007 * 113.46557 * 321.86480 * 15 10 8 40 40 H 1.08993 * 113.46479 * 92.30417 * 15 10 8 41 41 H 1.07999 * 120.00168 * 180.02562 * 16 5 4 42 42 H 1.07998 * 119.91404 * 180.02562 * 17 16 5 43 43 H 0.97001 * 119.99370 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2942 2.3693 0.0005 5 6 1.9332 3.6147 0.0011 6 6 1.1379 4.8507 0.0022 7 6 1.4721 5.8678 0.8250 8 6 2.4289 5.6474 1.9089 9 8 2.8282 4.5228 2.1490 10 7 2.8686 6.6894 2.6419 11 6 2.6403 8.1421 2.6608 12 6 2.9822 8.1191 4.1597 13 6 3.8334 9.3024 4.6243 14 9 4.5768 8.9291 5.7490 15 6 3.7932 6.8750 3.7705 16 6 3.3319 3.6803 0.0016 17 6 4.0752 2.5217 0.0011 18 6 3.4405 1.2844 -0.0056 19 8 4.1776 0.1461 -0.0122 20 6 5.5098 0.2790 0.1412 21 1 5.9340 1.2474 0.3621 22 6 6.3362 -0.8279 0.0154 23 7 5.8196 -2.0071 -0.2531 24 14 8.1830 -0.6435 0.2274 25 1 8.4761 -0.1299 1.5896 26 1 8.8364 -1.9646 0.0458 27 1 8.7046 0.3104 -0.7841 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 0.2156 2.3143 0.0002 32 1 0.2862 4.9453 -0.6551 33 1 1.0328 6.8441 0.6827 34 1 3.3576 8.7020 2.0606 35 1 1.6074 8.4219 2.4538 36 1 2.1354 7.9140 4.8146 37 1 4.5105 9.5995 3.8234 38 1 3.1835 10.1394 4.8798 39 1 3.7425 6.0751 4.5093 40 1 4.8140 7.1012 3.4626 41 1 3.8276 4.6399 0.0025 42 1 5.1539 2.5738 0.0019 43 1 6.3975 -2.7812 -0.3407 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493466453.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:10:48 Heat of formation + Delta-G solvation = -47.270466 kcal Electronic energy + Delta-G solvation = -28223.282422 eV Core-core repulsion = 23959.025831 eV Total energy + Delta-G solvation = -4264.256591 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.137 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -47.94176 -40.46278 -39.50295 -38.10676 -37.43816 -35.92441 -32.94628 -32.12890 -31.29829 -29.45024 -28.60115 -26.98983 -26.22195 -26.14233 -25.23641 -23.00429 -21.48584 -21.32847 -20.24306 -18.63596 -17.97819 -17.67746 -16.86323 -16.73622 -16.34014 -16.07489 -15.88787 -15.29204 -15.05236 -14.98711 -14.58974 -14.35101 -14.16786 -13.80270 -13.47120 -13.38558 -13.28181 -13.24575 -12.90506 -12.71025 -12.47331 -12.20520 -11.64518 -11.52837 -11.38402 -11.36524 -11.27648 -11.04658 -10.93548 -10.83202 -10.61381 -10.46155 -10.31559 -9.53634 -9.37447 -9.12857 -8.74771 -8.65275 -7.72446 -6.65421 -6.41641 -3.93886 1.17558 2.32930 2.63519 2.80518 3.16383 3.18654 3.20442 3.53422 3.69878 3.99788 4.12283 4.23244 4.32781 4.50512 4.62479 4.65742 4.81893 5.02947 5.11017 5.12487 5.14222 5.16181 5.20968 5.28807 5.47007 5.53704 5.55867 5.63516 5.68854 5.76928 5.81966 5.84740 5.92525 6.24567 6.31867 6.46520 6.59131 6.72612 7.04279 7.16996 7.29367 7.45367 7.71664 7.75639 8.00275 8.28477 8.45269 9.02630 9.75198 10.75442 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.010234 B = 0.003147 C = 0.002529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2735.212725 B = 8896.493340 C =11068.835089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.305 6.305 3 C 0.042 3.958 4 C -0.136 4.136 5 C -0.156 4.156 6 C 0.026 3.974 7 C -0.256 4.256 8 C 0.569 3.431 9 O -0.504 6.504 10 N -0.652 5.652 11 C 0.113 3.887 12 C -0.166 4.166 13 C 0.075 3.925 14 F -0.214 7.214 15 C 0.113 3.887 16 C -0.017 4.017 17 C -0.219 4.219 18 C 0.151 3.849 19 O -0.157 6.157 20 C -0.388 4.388 21 H 0.092 0.908 22 C 0.040 3.960 23 N -0.854 5.854 24 Si 0.941 3.059 25 H -0.269 1.269 26 H -0.277 1.277 27 H -0.269 1.269 28 H 0.089 0.911 29 H 0.044 0.956 30 H 0.044 0.956 31 H 0.117 0.883 32 H 0.124 0.876 33 H 0.120 0.880 34 H 0.085 0.915 35 H 0.081 0.919 36 H 0.114 0.886 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.081 0.919 40 H 0.084 0.916 41 H 0.098 0.902 42 H 0.131 0.869 43 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.862 22.426 4.137 24.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.219 6.219 3 C -0.003 4.003 4 C -0.155 4.155 5 C -0.157 4.157 6 C 0.006 3.994 7 C -0.277 4.277 8 C 0.363 3.637 9 O -0.379 6.379 10 N -0.390 5.390 11 C -0.011 4.011 12 C -0.185 4.185 13 C 0.020 3.980 14 F -0.195 7.195 15 C -0.010 4.010 16 C -0.036 4.036 17 C -0.239 4.239 18 C 0.096 3.904 19 O -0.059 6.059 20 C -0.464 4.464 21 H 0.110 0.890 22 C -0.165 4.165 23 N -0.488 5.488 24 Si 0.766 3.234 25 H -0.194 1.194 26 H -0.202 1.202 27 H -0.194 1.194 28 H 0.108 0.892 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.135 0.865 32 H 0.142 0.858 33 H 0.138 0.862 34 H 0.103 0.897 35 H 0.099 0.901 36 H 0.132 0.868 37 H 0.097 0.903 38 H 0.098 0.902 39 H 0.099 0.901 40 H 0.102 0.898 41 H 0.116 0.884 42 H 0.149 0.851 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -8.581 20.861 4.086 22.924 hybrid contribution 0.655 0.526 0.189 0.861 sum -7.926 21.386 4.275 23.205 Atomic orbital electron populations 1.22855 0.80656 1.02741 1.00102 1.86223 1.19170 1.26453 1.90043 1.17933 0.89351 0.84364 1.08635 1.20659 0.97995 0.90922 1.05925 1.18031 0.92819 0.91273 1.13610 1.22311 0.93657 0.91354 0.92044 1.22502 1.05609 1.00092 0.99529 1.18080 0.81133 0.82852 0.81670 1.91033 1.57432 1.21275 1.68130 1.49583 1.46537 1.06893 1.35994 1.22903 1.02297 0.82303 0.93600 1.23748 1.00770 0.96338 0.97663 1.21859 0.93766 0.96631 0.85765 1.92794 1.78790 1.93242 1.54662 1.22809 0.94043 0.95965 0.88160 1.20498 0.91959 0.96533 0.94566 1.20730 1.00313 0.90871 1.11966 1.18829 0.88276 0.87562 0.95753 1.84007 1.19690 1.25606 1.76610 1.21375 0.79066 0.96870 1.49060 0.89039 1.25330 1.00410 0.94336 0.96468 1.70045 1.36200 0.99096 1.43419 0.85778 0.80401 0.77985 0.79276 1.19401 1.20218 1.19429 0.89218 0.93739 0.93721 0.86480 0.85844 0.86198 0.89669 0.90060 0.86795 0.90320 0.90175 0.90058 0.89809 0.88365 0.85107 0.91893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 9.81 101.05 0.99 1.51 16 2 O -0.30 -7.06 10.28 -34.21 -0.35 -7.41 16 3 C 0.04 0.99 6.70 -39.13 -0.26 0.73 16 4 C -0.14 -2.68 8.77 -38.99 -0.34 -3.02 16 5 C -0.16 -2.96 4.43 -105.04 -0.47 -3.42 16 6 C 0.03 0.37 9.79 -37.19 -0.36 0.01 16 7 C -0.26 -3.35 9.71 -37.50 -0.36 -3.72 16 8 C 0.57 9.01 7.06 -13.04 -0.09 8.91 16 9 O -0.50 -10.51 13.26 5.17 0.07 -10.44 16 10 N -0.65 -7.83 3.69 -186.73 -0.69 -8.52 16 11 C 0.11 0.76 7.90 -8.37 -0.07 0.69 16 12 C -0.17 -1.10 4.50 -89.96 -0.40 -1.51 16 13 C 0.08 0.39 7.47 37.16 0.28 0.67 16 14 F -0.21 -1.90 17.23 2.25 0.04 -1.86 16 15 C 0.11 1.18 8.07 -8.49 -0.07 1.11 16 16 C -0.02 -0.35 6.74 -39.13 -0.26 -0.62 16 17 C -0.22 -5.25 9.09 -39.49 -0.36 -5.61 16 18 C 0.15 4.01 6.67 -38.76 -0.26 3.75 16 19 O -0.16 -4.80 9.52 -13.95 -0.13 -4.93 16 20 C -0.39 -11.37 9.41 30.91 0.29 -11.08 16 21 H 0.09 2.50 5.33 -52.48 -0.28 2.22 16 22 C 0.04 1.13 5.49 -17.51 -0.10 1.04 16 23 N -0.85 -25.86 13.67 55.48 0.76 -25.10 16 24 Si 0.94 21.17 29.55 -169.99 -5.02 16.15 16 25 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 26 H -0.28 -6.05 7.11 56.52 0.40 -5.64 16 27 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 28 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 29 H 0.04 0.65 7.66 -51.93 -0.40 0.25 16 30 H 0.04 0.62 7.66 -51.93 -0.40 0.23 16 31 H 0.12 1.91 6.28 -52.49 -0.33 1.58 16 32 H 0.12 1.33 8.06 -52.49 -0.42 0.90 16 33 H 0.12 1.13 7.98 -52.49 -0.42 0.71 16 34 H 0.09 0.43 7.93 -51.93 -0.41 0.02 16 35 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.11 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.08 0.29 7.89 -51.93 -0.41 -0.12 16 38 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 39 H 0.08 0.98 8.14 -51.92 -0.42 0.56 16 40 H 0.08 0.81 8.10 -51.93 -0.42 0.39 16 41 H 0.10 1.88 7.23 -52.49 -0.38 1.50 16 42 H 0.13 3.11 5.74 -52.49 -0.30 2.81 16 43 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 369.01 15.07 5.56 5.56 Total: -1.00 -37.50 369.01 -7.03 -44.53 By element: Atomic # 1 Polarization: 8.01 SS G_CDS: -5.42 Total: 2.59 kcal Atomic # 6 Polarization: -8.72 SS G_CDS: -1.85 Total: -10.56 kcal Atomic # 7 Polarization: -33.69 SS G_CDS: 0.07 Total: -33.62 kcal Atomic # 8 Polarization: -22.37 SS G_CDS: -0.42 Total: -22.79 kcal Atomic # 9 Polarization: -1.90 SS G_CDS: 0.04 Total: -1.86 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -37.50 -7.03 -44.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493466453.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.740 kcal (2) G-P(sol) polarization free energy of solvation -37.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds