Wall clock time and date at job start Tue Mar 31 2020 18:54:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34779 * 120.00497 * 2 1 4 4 O 1.21515 * 119.99465 * 359.97438 * 3 2 1 5 5 O 1.34672 * 119.99809 * 179.97438 * 3 2 1 6 6 C 1.35944 * 116.99633 * 185.20276 * 5 3 2 7 7 C 1.38807 * 120.01480 * 245.78975 * 6 5 3 8 8 C 1.38179 * 120.09160 * 179.76730 * 7 6 5 9 9 C 1.38152 * 120.13526 * 0.51288 * 8 7 6 10 10 C 1.38941 * 120.02463 * 359.73834 * 9 8 7 11 11 N 1.39732 * 120.04214 * 180.02562 * 10 9 8 12 12 C 1.34771 * 119.99656 * 215.20317 * 11 10 9 13 13 O 1.21375 * 120.00293 * 355.83977 * 12 11 10 14 14 C 1.49360 * 119.99645 * 175.84078 * 12 11 10 15 15 O 1.21353 * 119.99981 * 359.97438 * 14 12 11 16 16 N 1.34781 * 119.99638 * 179.97438 * 14 12 11 17 17 C 1.46500 * 119.99499 * 179.97438 * 16 14 12 18 18 C 1.53003 * 109.47267 * 180.02562 * 17 16 14 19 19 C 1.50699 * 109.47448 * 180.02562 * 18 17 16 20 20 H 1.08003 * 119.99506 * 359.97438 * 19 18 17 21 21 C 1.37875 * 119.99979 * 180.02562 * 19 18 17 22 22 N 1.31509 * 119.99863 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 119.99978 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.46877 * 89.99693 * 23 21 19 25 25 H 1.48492 * 109.46973 * 209.99673 * 23 21 19 26 26 H 1.48504 * 109.47022 * 329.99638 * 23 21 19 27 27 C 1.38554 * 120.01362 * 66.06776 * 6 5 3 28 28 H 1.08999 * 109.46812 * 59.99646 * 1 2 3 29 29 H 1.08994 * 109.47424 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47098 * 300.00504 * 1 2 3 31 31 H 0.97001 * 119.99628 * 179.97438 * 2 1 3 32 32 H 1.08001 * 119.95395 * 0.02562 * 7 6 5 33 33 H 1.08007 * 119.93259 * 180.25220 * 8 7 6 34 34 H 1.07997 * 119.98661 * 179.76831 * 9 8 7 35 35 H 0.96992 * 119.99848 * 35.21240 * 11 10 9 36 36 H 0.96997 * 120.00243 * 0.02562 * 16 14 12 37 37 H 1.09005 * 109.47319 * 300.00168 * 17 16 14 38 38 H 1.08996 * 109.47359 * 60.00241 * 17 16 14 39 39 H 1.09002 * 109.46331 * 300.00241 * 18 17 16 40 40 H 1.08996 * 109.46994 * 59.99699 * 18 17 16 41 41 H 0.97008 * 119.99891 * 179.97438 * 22 21 19 42 42 H 1.07998 * 120.06792 * 359.95314 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 8 1.5314 2.2195 -0.0005 5 8 3.4857 1.1670 0.0005 6 6 4.1029 2.3733 0.1103 7 6 4.8578 2.8657 -0.9454 8 6 5.4818 4.0938 -0.8373 9 6 5.3656 4.8309 0.3254 10 6 4.6156 4.3407 1.3873 11 7 4.4973 5.0862 2.5632 12 6 4.4400 4.4599 3.7551 13 8 4.4149 3.2474 3.8031 14 6 4.4073 5.2580 5.0172 15 8 4.4328 6.4703 4.9693 16 7 4.3494 4.6317 6.2092 17 6 4.3179 5.4145 7.4471 18 6 4.2540 4.4681 8.6476 19 6 4.2210 5.2734 9.9210 20 1 4.2437 6.3523 9.8783 21 6 4.1627 4.6327 11.1405 22 7 4.1356 3.3189 11.1924 23 14 4.1225 5.6308 12.7189 24 1 2.7130 5.9222 13.0845 25 1 4.7671 4.8573 13.8103 26 1 4.8554 6.9065 12.5167 27 6 3.9835 3.1091 1.2782 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.9500 -0.8401 0.0004 32 1 4.9540 2.2900 -1.8541 33 1 6.0652 4.4763 -1.6618 34 1 5.8574 5.7887 0.4086 35 1 4.4563 6.0544 2.5215 36 1 4.3294 3.6627 6.2475 37 1 5.2183 6.0252 7.5139 38 1 3.4400 6.0605 7.4463 39 1 3.3538 3.8571 8.5810 40 1 5.1321 3.8224 8.6483 41 1 4.0950 2.8681 12.0504 42 1 3.3997 2.7258 2.1020 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000495670026.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:54:25 Heat of formation + Delta-G solvation = -108.977953 kcal Electronic energy + Delta-G solvation = -27423.353449 eV Core-core repulsion = 23176.340982 eV Total energy + Delta-G solvation = -4247.012467 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.136 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.64858 -40.88627 -39.30053 -38.29156 -37.27967 -35.49139 -35.14238 -34.61788 -32.89413 -30.79611 -30.14276 -29.77468 -27.47316 -25.94120 -24.29615 -23.73375 -22.43966 -21.48073 -21.07372 -20.30607 -19.75318 -18.57404 -18.03190 -17.13487 -16.78154 -16.66857 -16.39319 -16.03440 -15.82696 -15.37431 -15.20822 -14.89185 -14.57708 -14.52405 -14.34204 -13.91171 -13.67372 -13.57313 -13.10798 -12.83466 -12.72914 -12.55740 -12.34907 -12.09174 -11.77697 -11.31387 -11.22799 -11.08743 -11.04036 -10.69218 -10.64563 -10.44096 -9.84883 -9.74363 -9.51736 -9.27417 -9.08353 -8.78091 -8.51353 -8.44726 -6.12586 -4.16442 0.63635 0.91943 1.52809 1.92396 2.31364 2.40196 3.20275 3.27613 3.33913 3.37433 3.44130 3.67820 3.91563 4.37307 4.54342 4.62234 4.69017 4.78086 4.79395 5.02688 5.05163 5.14983 5.24445 5.27697 5.37710 5.74970 5.83447 5.92015 5.98231 6.04524 6.12573 6.18884 6.20757 6.50560 6.62849 6.65934 6.86581 6.89648 7.39048 7.53441 7.53970 7.76186 7.84232 7.95967 8.12729 8.26113 8.89098 9.48676 10.98909 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.014446 B = 0.002147 C = 0.001933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1937.801264 B =13038.747235 C =14478.416794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.104 3.896 2 N -0.710 5.710 3 C 0.642 3.358 4 O -0.550 6.550 5 O -0.301 6.301 6 C 0.120 3.880 7 C -0.131 4.131 8 C -0.086 4.086 9 C -0.138 4.138 10 C 0.161 3.839 11 N -0.648 5.648 12 C 0.509 3.491 13 O -0.499 6.499 14 C 0.501 3.499 15 O -0.528 6.528 16 N -0.682 5.682 17 C 0.118 3.882 18 C 0.011 3.989 19 C -0.524 4.524 20 H 0.061 0.939 21 C 0.059 3.941 22 N -0.892 5.892 23 Si 0.898 3.102 24 H -0.279 1.279 25 H -0.286 1.286 26 H -0.272 1.272 27 C -0.121 4.121 28 H 0.064 0.936 29 H 0.086 0.914 30 H 0.066 0.934 31 H 0.411 0.589 32 H 0.134 0.866 33 H 0.139 0.861 34 H 0.136 0.864 35 H 0.426 0.574 36 H 0.411 0.589 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.025 0.975 40 H 0.026 0.974 41 H 0.263 0.737 42 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.447 -5.500 -28.221 28.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.369 5.369 3 C 0.394 3.606 4 O -0.436 6.436 5 O -0.213 6.213 6 C 0.077 3.923 7 C -0.150 4.150 8 C -0.104 4.104 9 C -0.158 4.158 10 C 0.066 3.934 11 N -0.295 5.295 12 C 0.291 3.709 13 O -0.372 6.372 14 C 0.280 3.720 15 O -0.406 6.406 16 N -0.333 5.333 17 C -0.003 4.003 18 C -0.027 4.027 19 C -0.562 4.562 20 H 0.079 0.921 21 C -0.143 4.143 22 N -0.531 5.531 23 Si 0.726 3.274 24 H -0.205 1.205 25 H -0.211 1.211 26 H -0.197 1.197 27 C -0.141 4.141 28 H 0.083 0.917 29 H 0.105 0.895 30 H 0.085 0.915 31 H 0.245 0.755 32 H 0.151 0.849 33 H 0.157 0.843 34 H 0.154 0.846 35 H 0.264 0.736 36 H 0.247 0.753 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.044 0.956 40 H 0.044 0.956 41 H 0.073 0.927 42 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -1.748 -5.065 -27.976 28.485 hybrid contribution 0.112 -0.014 0.988 0.994 sum -1.637 -5.080 -26.989 27.511 Atomic orbital electron populations 1.21633 0.76078 1.03099 1.03071 1.44402 1.07687 1.06327 1.78466 1.18411 0.80510 0.84985 0.76651 1.91065 1.67919 1.30506 1.54134 1.84279 1.19692 1.31720 1.85615 1.18021 0.96095 0.84564 0.93583 1.21021 1.00287 0.96164 0.97499 1.20769 0.98951 0.93261 0.97439 1.21058 0.99307 1.01931 0.93507 1.17452 0.96820 0.92618 0.86493 1.43144 1.71132 1.11634 1.03606 1.20719 0.76754 0.88171 0.85221 1.90768 1.45629 1.13660 1.87108 1.19677 0.79818 0.87756 0.84738 1.90752 1.49600 1.13167 1.87097 1.46241 1.69390 1.12102 1.05581 1.21986 1.01496 0.95369 0.81476 1.19363 0.98265 0.94642 0.90399 1.21002 1.51709 0.93220 0.90314 0.92125 1.25003 0.94899 0.94966 0.99411 1.69959 1.49923 1.07457 1.25730 0.86487 0.78271 0.80056 0.82591 1.20525 1.21139 1.19708 1.21397 1.00027 0.94772 0.97938 0.91696 0.89487 0.91523 0.75471 0.84853 0.84341 0.84623 0.73556 0.75299 0.91677 0.91676 0.95643 0.95618 0.92742 0.83617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.59 10.70 59.85 0.64 1.23 16 2 N -0.71 -5.42 5.72 -72.11 -0.41 -5.83 16 3 C 0.64 7.65 8.51 54.06 0.46 8.11 16 4 O -0.55 -8.39 15.67 -19.28 -0.30 -8.69 16 5 O -0.30 -3.57 10.10 -24.74 -0.25 -3.82 16 6 C 0.12 1.49 5.37 -39.25 -0.21 1.28 16 7 C -0.13 -1.25 9.98 -39.39 -0.39 -1.64 16 8 C -0.09 -0.69 10.03 -39.63 -0.40 -1.09 16 9 C -0.14 -1.27 9.96 -39.35 -0.39 -1.66 16 10 C 0.16 1.97 6.29 -83.77 -0.53 1.44 16 11 N -0.65 -8.07 5.32 -10.31 -0.05 -8.13 16 12 C 0.51 7.73 7.72 -11.63 -0.09 7.64 16 13 O -0.50 -8.42 13.93 5.47 0.08 -8.34 16 14 C 0.50 8.49 7.89 -11.63 -0.09 8.40 16 15 O -0.53 -9.75 16.48 5.49 0.09 -9.66 16 16 N -0.68 -12.22 5.55 -60.76 -0.34 -12.56 16 17 C 0.12 2.43 5.61 -4.04 -0.02 2.41 16 18 C 0.01 0.26 5.09 -27.88 -0.14 0.12 16 19 C -0.52 -14.29 9.11 -34.44 -0.31 -14.61 16 20 H 0.06 1.60 7.74 -52.48 -0.41 1.20 16 21 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 22 N -0.89 -26.00 13.29 55.43 0.74 -25.27 16 23 Si 0.90 21.18 29.54 -169.99 -5.02 16.15 16 24 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 25 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 26 H -0.27 -6.30 7.11 56.52 0.40 -5.89 16 27 C -0.12 -1.68 7.78 -39.24 -0.31 -1.98 16 28 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 29 H 0.09 0.20 8.14 -51.93 -0.42 -0.23 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.41 1.96 8.94 -40.82 -0.36 1.60 16 32 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 33 H 0.14 0.67 8.06 -52.48 -0.42 0.24 16 34 H 0.14 0.90 8.06 -52.49 -0.42 0.48 16 35 H 0.43 4.44 8.30 -40.82 -0.34 4.10 16 36 H 0.41 7.01 7.94 -40.82 -0.32 6.68 16 37 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 38 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 39 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 41 H 0.26 7.23 8.31 -40.82 -0.34 6.90 16 42 H 0.15 2.33 6.25 -52.49 -0.33 2.00 16 LS Contribution 375.06 15.07 5.65 5.65 Total: -1.00 -34.88 375.06 -6.83 -41.71 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: -5.12 Total: 7.58 kcal Atomic # 6 Polarization: 13.08 SS G_CDS: -1.88 Total: 11.20 kcal Atomic # 7 Polarization: -51.71 SS G_CDS: -0.07 Total: -51.78 kcal Atomic # 8 Polarization: -30.12 SS G_CDS: -0.39 Total: -30.51 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -34.88 -6.83 -41.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495670026.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.270 kcal (2) G-P(sol) polarization free energy of solvation -34.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds