Wall clock time and date at job start Tue Mar 31 2020 18:54:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34779 * 120.00497 * 2 1 4 4 O 1.21515 * 119.99465 * 359.97438 * 3 2 1 5 5 O 1.34672 * 119.99809 * 179.97438 * 3 2 1 6 6 C 1.35944 * 116.99633 * 185.20276 * 5 3 2 7 7 C 1.38807 * 120.01480 * 245.78975 * 6 5 3 8 8 C 1.38179 * 120.09160 * 179.76730 * 7 6 5 9 9 C 1.38152 * 120.13526 * 0.51288 * 8 7 6 10 10 C 1.38941 * 120.02463 * 359.73834 * 9 8 7 11 11 N 1.39732 * 120.04214 * 180.02562 * 10 9 8 12 12 C 1.34771 * 119.99656 * 215.20317 * 11 10 9 13 13 O 1.21375 * 120.00293 * 355.83977 * 12 11 10 14 14 C 1.49360 * 119.99645 * 175.84078 * 12 11 10 15 15 O 1.21353 * 119.99981 * 359.97438 * 14 12 11 16 16 N 1.34781 * 119.99638 * 179.97438 * 14 12 11 17 17 C 1.46500 * 119.99499 * 179.97438 * 16 14 12 18 18 C 1.53003 * 109.47267 * 180.02562 * 17 16 14 19 19 C 1.50699 * 109.47448 * 180.02562 * 18 17 16 20 20 H 1.08003 * 119.99506 * 359.97438 * 19 18 17 21 21 C 1.37875 * 119.99979 * 180.02562 * 19 18 17 22 22 N 1.31509 * 119.99863 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 119.99978 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.46877 * 89.99693 * 23 21 19 25 25 H 1.48492 * 109.46973 * 209.99673 * 23 21 19 26 26 H 1.48504 * 109.47022 * 329.99638 * 23 21 19 27 27 C 1.38554 * 120.01362 * 66.06776 * 6 5 3 28 28 H 1.08999 * 109.46812 * 59.99646 * 1 2 3 29 29 H 1.08994 * 109.47424 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47098 * 300.00504 * 1 2 3 31 31 H 0.97001 * 119.99628 * 179.97438 * 2 1 3 32 32 H 1.08001 * 119.95395 * 0.02562 * 7 6 5 33 33 H 1.08007 * 119.93259 * 180.25220 * 8 7 6 34 34 H 1.07997 * 119.98661 * 179.76831 * 9 8 7 35 35 H 0.96992 * 119.99848 * 35.21240 * 11 10 9 36 36 H 0.96997 * 120.00243 * 0.02562 * 16 14 12 37 37 H 1.09005 * 109.47319 * 300.00168 * 17 16 14 38 38 H 1.08996 * 109.47359 * 60.00241 * 17 16 14 39 39 H 1.09002 * 109.46331 * 300.00241 * 18 17 16 40 40 H 1.08996 * 109.46994 * 59.99699 * 18 17 16 41 41 H 0.97008 * 119.99891 * 179.97438 * 22 21 19 42 42 H 1.07998 * 120.06792 * 359.95314 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 8 1.5314 2.2195 -0.0005 5 8 3.4857 1.1670 0.0005 6 6 4.1029 2.3733 0.1103 7 6 4.8578 2.8657 -0.9454 8 6 5.4818 4.0938 -0.8373 9 6 5.3656 4.8309 0.3254 10 6 4.6156 4.3407 1.3873 11 7 4.4973 5.0862 2.5632 12 6 4.4400 4.4599 3.7551 13 8 4.4149 3.2474 3.8031 14 6 4.4073 5.2580 5.0172 15 8 4.4328 6.4703 4.9693 16 7 4.3494 4.6317 6.2092 17 6 4.3179 5.4145 7.4471 18 6 4.2540 4.4681 8.6476 19 6 4.2210 5.2734 9.9210 20 1 4.2437 6.3523 9.8783 21 6 4.1627 4.6327 11.1405 22 7 4.1356 3.3189 11.1924 23 14 4.1225 5.6308 12.7189 24 1 2.7130 5.9222 13.0845 25 1 4.7671 4.8573 13.8103 26 1 4.8554 6.9065 12.5167 27 6 3.9835 3.1091 1.2782 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.9500 -0.8401 0.0004 32 1 4.9540 2.2900 -1.8541 33 1 6.0652 4.4763 -1.6618 34 1 5.8574 5.7887 0.4086 35 1 4.4563 6.0544 2.5215 36 1 4.3294 3.6627 6.2475 37 1 5.2183 6.0252 7.5139 38 1 3.4400 6.0605 7.4463 39 1 3.3538 3.8571 8.5810 40 1 5.1321 3.8224 8.6483 41 1 4.0950 2.8681 12.0504 42 1 3.3997 2.7258 2.1020 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000495670026.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:54:24 Heat of formation + Delta-G solvation = -136.575153 kcal Electronic energy + Delta-G solvation = -27424.550154 eV Core-core repulsion = 23176.340982 eV Total energy + Delta-G solvation = -4248.209172 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.136 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.57010 -42.03243 -40.43170 -39.41177 -38.19599 -36.97159 -35.97172 -35.82546 -34.83285 -31.80870 -31.56527 -30.92814 -28.09616 -27.56362 -25.79449 -24.57963 -23.57242 -22.77442 -22.34678 -21.55881 -20.63706 -19.72898 -19.07077 -18.61723 -18.08748 -17.67494 -17.49952 -17.23863 -16.97299 -16.55832 -16.38573 -16.13948 -16.06467 -15.62604 -15.42577 -15.11546 -14.76975 -14.57060 -14.33387 -14.32007 -13.78407 -13.42530 -13.28627 -13.16374 -12.98851 -12.96482 -12.81349 -12.54780 -12.31367 -12.27402 -12.01968 -11.70937 -11.60779 -11.45120 -10.81318 -10.63681 -10.44477 -10.28328 -9.91756 -9.40395 -8.25086 -6.36428 -0.26621 -0.00185 0.41472 1.10280 1.16935 1.42645 1.43036 1.50161 1.54595 1.93330 2.36133 2.50334 2.61621 3.10106 3.16094 3.25863 3.81190 3.96054 4.04340 4.23686 4.30544 4.34179 4.37980 4.42187 4.54162 4.57139 4.78111 4.86966 4.98425 5.00100 5.06524 5.08445 5.18714 5.26748 5.39568 5.41106 5.51989 5.70569 5.77997 5.86043 6.10121 6.21408 6.21914 6.53378 6.73773 6.79923 7.14776 7.33328 8.87071 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.014446 B = 0.002147 C = 0.001933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1937.801264 B =13038.747235 C =14478.416794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.693 5.693 3 C 0.632 3.368 4 O -0.592 6.592 5 O -0.302 6.302 6 C 0.094 3.906 7 C -0.125 4.125 8 C -0.073 4.073 9 C -0.126 4.126 10 C 0.135 3.865 11 N -0.631 5.631 12 C 0.513 3.487 13 O -0.521 6.521 14 C 0.508 3.492 15 O -0.540 6.540 16 N -0.685 5.685 17 C 0.137 3.863 18 C 0.018 3.982 19 C -0.544 4.544 20 H 0.066 0.934 21 C 0.004 3.996 22 N -0.929 5.929 23 Si 0.968 3.032 24 H -0.273 1.273 25 H -0.282 1.282 26 H -0.263 1.263 27 C -0.147 4.147 28 H 0.062 0.938 29 H 0.128 0.872 30 H 0.050 0.950 31 H 0.425 0.575 32 H 0.160 0.840 33 H 0.184 0.816 34 H 0.168 0.832 35 H 0.436 0.564 36 H 0.415 0.585 37 H 0.066 0.934 38 H 0.064 0.936 39 H 0.007 0.993 40 H 0.008 0.992 41 H 0.266 0.734 42 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.560 -4.640 -30.137 30.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.353 5.353 3 C 0.385 3.615 4 O -0.481 6.481 5 O -0.214 6.214 6 C 0.051 3.949 7 C -0.144 4.144 8 C -0.091 4.091 9 C -0.146 4.146 10 C 0.042 3.958 11 N -0.278 5.278 12 C 0.295 3.705 13 O -0.396 6.396 14 C 0.288 3.712 15 O -0.419 6.419 16 N -0.336 5.336 17 C 0.015 3.985 18 C -0.020 4.020 19 C -0.583 4.583 20 H 0.084 0.916 21 C -0.195 4.195 22 N -0.569 5.569 23 Si 0.793 3.207 24 H -0.198 1.198 25 H -0.208 1.208 26 H -0.187 1.187 27 C -0.168 4.168 28 H 0.081 0.919 29 H 0.147 0.853 30 H 0.069 0.931 31 H 0.263 0.737 32 H 0.177 0.823 33 H 0.201 0.799 34 H 0.185 0.815 35 H 0.276 0.724 36 H 0.251 0.749 37 H 0.084 0.916 38 H 0.082 0.918 39 H 0.025 0.975 40 H 0.026 0.974 41 H 0.074 0.926 42 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -0.856 -4.221 -29.940 30.248 hybrid contribution -0.167 -0.328 1.439 1.485 sum -1.024 -4.549 -28.501 28.880 Atomic orbital electron populations 1.21860 0.74769 1.05528 1.02149 1.44518 1.08453 1.05708 1.76592 1.18794 0.80516 0.85611 0.76568 1.91021 1.68563 1.32193 1.56302 1.84278 1.19670 1.31840 1.85566 1.18373 0.97302 0.84990 0.94205 1.21448 0.98787 0.96833 0.97319 1.21326 0.97743 0.92069 0.97969 1.21471 0.97686 1.02951 0.92457 1.17700 0.98525 0.92511 0.87109 1.42990 1.69810 1.12086 1.02963 1.20276 0.77219 0.87605 0.85360 1.90775 1.47124 1.14382 1.87301 1.19892 0.78784 0.87623 0.84950 1.90737 1.49990 1.13748 1.87393 1.46067 1.70050 1.12148 1.05350 1.21540 1.01447 0.94336 0.81184 1.19184 0.96445 0.94665 0.91658 1.21447 1.51443 0.93829 0.91553 0.91567 1.25930 0.94411 0.96027 1.03086 1.70079 1.50896 1.09160 1.26722 0.85393 0.78561 0.78682 0.78100 1.19801 1.20758 1.18671 1.21286 1.01260 0.96247 0.97987 0.91939 0.85342 0.93135 0.73720 0.82266 0.79902 0.81455 0.72382 0.74895 0.91601 0.91764 0.97501 0.97357 0.92555 0.86932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.06 10.70 127.77 1.37 2.43 16 2 N -0.69 -10.42 5.72 -612.45 -3.50 -13.92 16 3 C 0.63 15.56 8.51 129.79 1.10 16.66 16 4 O -0.59 -18.93 15.67 19.79 0.31 -18.62 16 5 O -0.30 -7.32 10.10 0.24 0.00 -7.32 16 6 C 0.09 2.34 5.37 22.48 0.12 2.46 16 7 C -0.13 -2.10 9.98 22.39 0.22 -1.88 16 8 C -0.07 -0.90 10.03 22.24 0.22 -0.67 16 9 C -0.13 -1.95 9.96 22.42 0.22 -1.73 16 10 C 0.14 3.24 6.29 38.20 0.24 3.48 16 11 N -0.63 -15.56 5.32 -304.88 -1.62 -17.18 16 12 C 0.51 15.94 7.72 87.24 0.67 16.61 16 13 O -0.52 -18.42 13.93 -3.33 -0.05 -18.47 16 14 C 0.51 17.35 7.89 87.24 0.69 18.04 16 15 O -0.54 -19.72 16.48 -3.26 -0.05 -19.78 16 16 N -0.69 -25.11 5.55 -464.50 -2.58 -27.69 16 17 C 0.14 5.73 5.61 86.38 0.48 6.21 16 18 C 0.02 0.91 5.09 29.85 0.15 1.06 16 19 C -0.54 -30.00 9.11 25.60 0.23 -29.77 16 20 H 0.07 3.49 7.74 -2.91 -0.02 3.47 16 21 C 0.00 0.23 5.46 84.65 0.46 0.69 16 22 N -0.93 -55.03 13.29 21.45 0.28 -54.74 16 23 Si 0.97 43.36 29.54 68.60 2.03 45.39 16 24 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 25 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 26 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 27 C -0.15 -4.24 7.78 22.49 0.18 -4.07 16 28 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.13 0.30 8.14 -2.39 -0.02 0.28 16 30 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.43 3.69 8.94 -92.71 -0.83 2.86 16 32 H 0.16 1.79 8.06 -2.91 -0.02 1.76 16 33 H 0.18 0.67 8.06 -2.91 -0.02 0.65 16 34 H 0.17 1.50 8.06 -2.91 -0.02 1.48 16 35 H 0.44 8.67 8.30 -92.71 -0.77 7.90 16 36 H 0.41 14.74 7.94 -92.71 -0.74 14.00 16 37 H 0.07 2.74 8.14 -2.38 -0.02 2.72 16 38 H 0.06 2.69 8.14 -2.39 -0.02 2.67 16 39 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 40 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 41 H 0.27 14.79 8.31 -92.70 -0.77 14.02 16 42 H 0.11 3.93 6.25 -2.91 -0.02 3.92 16 Total: -1.00 -78.21 375.06 -0.04 -78.24 By element: Atomic # 1 Polarization: 25.78 SS G_CDS: -1.23 Total: 24.55 kcal Atomic # 6 Polarization: 23.16 SS G_CDS: 6.37 Total: 29.53 kcal Atomic # 7 Polarization: -106.11 SS G_CDS: -7.42 Total: -113.53 kcal Atomic # 8 Polarization: -64.40 SS G_CDS: 0.21 Total: -64.18 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.39 kcal Total: -78.21 -0.04 -78.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495670026.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.332 kcal (2) G-P(sol) polarization free energy of solvation -78.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds