Wall clock time and date at job start Tue Mar 31 2020 18:13:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46500 * 109.47165 * 2 1 4 4 C 1.46495 * 119.99980 * 274.06100 * 3 2 1 5 5 C 1.50693 * 109.47410 * 280.93228 * 4 3 2 6 6 H 1.08004 * 120.00114 * 3.25479 * 5 4 3 7 7 C 1.37880 * 120.00432 * 183.25853 * 5 4 3 8 8 N 1.31512 * 119.99665 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 120.00296 * 179.97438 * 7 5 4 10 10 H 1.48495 * 109.46984 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.47111 * 120.00015 * 9 7 5 12 12 H 1.48497 * 109.47107 * 239.99913 * 9 7 5 13 13 S 1.65602 * 119.99912 * 94.06137 * 3 2 1 14 14 O 1.42098 * 106.40490 * 336.46909 * 13 3 2 15 15 O 1.42107 * 106.40008 * 203.55491 * 13 3 2 16 16 N 1.65592 * 107.21985 * 90.01383 * 13 3 2 17 17 C 1.46510 * 119.99885 * 65.59725 * 16 13 3 18 18 C 1.52997 * 109.47022 * 164.33148 * 17 16 13 19 19 C 1.52996 * 109.47200 * 179.97438 * 18 17 16 20 20 N 1.46498 * 109.47300 * 180.02562 * 19 18 17 21 21 C 1.47090 * 125.55950 * 90.00498 * 20 19 18 22 22 C 1.54086 * 103.77785 * 180.02562 * 21 20 19 23 23 O 1.45703 * 104.12956 * 359.92824 * 22 21 20 24 24 C 1.34000 * 125.55755 * 270.02312 * 20 19 18 25 25 O 1.21507 * 123.07541 * 0.02562 * 24 20 19 26 26 H 1.09004 * 109.47324 * 305.05126 * 1 2 3 27 27 H 1.08993 * 109.47226 * 65.05198 * 1 2 3 28 28 H 1.09002 * 109.47209 * 185.05296 * 1 2 3 29 29 H 1.09000 * 109.47416 * 240.00178 * 2 1 3 30 30 H 1.09003 * 109.47122 * 119.99704 * 2 1 3 31 31 H 1.09004 * 109.47313 * 40.93597 * 4 3 2 32 32 H 1.09004 * 109.47363 * 160.92786 * 4 3 2 33 33 H 0.97001 * 120.00462 * 180.02562 * 8 7 5 34 34 H 0.96996 * 120.00235 * 245.59816 * 16 13 3 35 35 H 1.09000 * 109.46846 * 44.33275 * 17 16 13 36 36 H 1.09000 * 109.47134 * 284.33283 * 17 16 13 37 37 H 1.09000 * 109.47206 * 60.00348 * 18 17 16 38 38 H 1.09000 * 109.47277 * 300.00048 * 18 17 16 39 39 H 1.09005 * 109.47288 * 59.99881 * 19 18 17 40 40 H 1.09000 * 109.47150 * 300.00255 * 19 18 17 41 41 H 1.08995 * 110.57035 * 61.44307 * 21 20 19 42 42 H 1.09003 * 110.69004 * 298.65289 * 21 20 19 43 43 H 1.09002 * 110.52449 * 118.62228 * 22 21 20 44 44 H 1.09000 * 110.52337 * 241.22799 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1778 2.1017 -1.2655 5 6 3.4575 1.6682 -1.9327 6 1 4.0625 0.8921 -1.4876 7 6 3.8563 2.2624 -3.1112 8 7 3.1199 3.2078 -3.6529 9 14 5.4430 1.7254 -3.9378 10 1 6.0823 0.6537 -3.1330 11 1 5.1429 1.2102 -5.2978 12 1 6.3649 2.8851 -4.0401 13 16 2.3901 2.1280 1.4306 14 8 1.6493 1.4547 2.4391 15 8 2.2868 3.5252 1.1925 16 7 3.9877 1.8234 1.7418 17 6 5.0227 2.3685 0.8597 18 6 6.3822 2.2861 1.5568 19 6 7.4631 2.8547 0.6354 20 7 8.7649 2.7751 1.3026 21 6 9.6984 1.6411 1.2243 22 6 10.8867 2.0828 2.1001 23 8 10.5057 3.4065 2.5753 24 6 9.2992 3.7235 2.0841 25 8 8.7415 4.7757 2.3256 26 1 -0.3634 0.5902 0.8413 27 1 -0.3633 0.4334 -0.9317 28 1 -0.3634 -1.0237 0.0905 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.3340 1.8796 -1.9189 32 1 2.2143 3.1737 -1.0712 33 1 3.4002 3.6257 -4.4823 34 1 4.2383 1.2842 2.5081 35 1 4.7941 3.4095 0.6313 36 1 5.0528 1.7919 -0.0648 37 1 6.6108 1.2451 1.7852 38 1 6.3520 2.8627 2.4813 39 1 7.2347 3.8957 0.4065 40 1 7.4931 2.2777 -0.2888 41 1 10.0200 1.4802 0.1954 42 1 9.2411 0.7374 1.6271 43 1 11.0183 1.3991 2.9388 44 1 11.7993 2.1380 1.5065 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000495709560.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:13:45 Heat of formation + Delta-G solvation = -150.282368 kcal Electronic energy + Delta-G solvation = -28230.653618 eV Core-core repulsion = 24117.294008 eV Total energy + Delta-G solvation = -4113.359610 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.139 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.64488 -37.35778 -36.79831 -36.52640 -36.03970 -35.19526 -34.97323 -32.77563 -31.49094 -29.95467 -29.49892 -26.68654 -25.60301 -23.88547 -23.19299 -22.15409 -21.68962 -20.88808 -18.79227 -17.61616 -17.38015 -17.08926 -16.93525 -16.80862 -16.50770 -15.68079 -15.43216 -15.00343 -14.63779 -14.41316 -14.32040 -14.04413 -13.96438 -13.63740 -13.32082 -12.94832 -12.79497 -12.56053 -12.36222 -12.10979 -11.99246 -11.78556 -11.61726 -11.43056 -11.33254 -11.21475 -11.12611 -11.00630 -10.98554 -10.87283 -10.65189 -10.54871 -10.42068 -10.06570 -9.84333 -9.14136 -8.95391 -8.58187 -8.08449 -6.18367 -4.25216 1.29915 2.26778 2.61478 3.14196 3.21000 3.24799 3.26166 3.56123 3.85833 4.16619 4.26372 4.32773 4.45701 4.87319 4.92911 4.98053 5.07465 5.14468 5.16782 5.22526 5.26132 5.41821 5.56332 5.74514 5.77977 5.79686 5.90683 5.99398 6.10626 6.28096 6.29385 6.35429 6.51287 6.65994 6.69526 7.17727 7.27355 7.35204 7.43391 7.65563 7.79184 7.90183 8.09583 8.79259 9.39779 10.89572 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.010723 B = 0.004106 C = 0.003303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2610.506181 B = 6817.902949 C = 8473.845649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.132 3.868 3 N -0.992 5.992 4 C 0.242 3.758 5 C -0.539 4.539 6 H 0.065 0.935 7 C 0.065 3.935 8 N -0.885 5.885 9 Si 0.888 3.112 10 H -0.272 1.272 11 H -0.283 1.283 12 H -0.281 1.281 13 S 2.786 3.214 14 O -1.001 7.001 15 O -0.979 6.979 16 N -1.130 6.130 17 C 0.117 3.883 18 C -0.142 4.142 19 C 0.144 3.856 20 N -0.627 5.627 21 C 0.063 3.937 22 C 0.041 3.959 23 O -0.332 6.332 24 C 0.639 3.361 25 O -0.517 6.517 26 H 0.054 0.946 27 H 0.059 0.941 28 H 0.057 0.943 29 H 0.080 0.920 30 H 0.061 0.939 31 H 0.034 0.966 32 H 0.055 0.945 33 H 0.265 0.735 34 H 0.405 0.595 35 H 0.081 0.919 36 H 0.094 0.906 37 H 0.068 0.932 38 H 0.071 0.929 39 H 0.096 0.904 40 H 0.093 0.907 41 H 0.093 0.907 42 H 0.093 0.907 43 H 0.104 0.896 44 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.558 -9.038 7.582 16.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.005 3.995 3 N -0.834 5.834 4 C 0.120 3.880 5 C -0.579 4.579 6 H 0.083 0.917 7 C -0.138 4.138 8 N -0.522 5.522 9 Si 0.715 3.285 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.207 1.207 13 S 2.793 3.207 14 O -0.985 6.985 15 O -0.963 6.963 16 N -0.888 5.888 17 C -0.010 4.010 18 C -0.182 4.182 19 C 0.023 3.977 20 N -0.375 5.375 21 C -0.061 4.061 22 C -0.034 4.034 23 O -0.243 6.243 24 C 0.393 3.607 25 O -0.401 6.401 26 H 0.073 0.927 27 H 0.078 0.922 28 H 0.076 0.924 29 H 0.099 0.901 30 H 0.079 0.921 31 H 0.052 0.948 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.237 0.763 35 H 0.100 0.900 36 H 0.112 0.888 37 H 0.087 0.913 38 H 0.090 0.910 39 H 0.115 0.885 40 H 0.112 0.888 41 H 0.111 0.889 42 H 0.111 0.889 43 H 0.122 0.878 44 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 10.745 -7.557 8.048 15.406 hybrid contribution 1.314 -1.023 -0.660 1.791 sum 12.059 -8.580 7.388 16.541 Atomic orbital electron populations 1.22203 0.97019 1.01296 1.02360 1.20947 0.93575 0.82891 1.02046 1.57723 1.78748 1.23011 1.23871 1.19218 0.97190 0.92608 0.78991 1.21546 1.07367 1.21237 1.07720 0.91720 1.24960 0.97067 0.94793 0.97006 1.69937 1.37921 1.24796 1.19584 0.86619 0.83607 0.78489 0.79762 1.19658 1.20947 1.20743 1.01721 0.72598 0.73703 0.72629 1.93543 1.69831 1.76505 1.58660 1.93583 1.85889 1.31211 1.85596 1.55945 1.25575 1.68304 1.38977 1.21352 0.85491 1.00854 0.93287 1.22171 0.94388 1.01708 0.99952 1.21379 0.77683 1.04125 0.94506 1.48109 1.20358 1.17689 1.51360 1.22818 0.89744 0.91376 1.02124 1.24260 0.98284 0.81826 0.99048 1.87368 1.33675 1.35217 1.68001 1.18599 0.79800 0.84266 0.78049 1.91073 1.61801 1.24065 1.63141 0.92670 0.92155 0.92432 0.90122 0.92068 0.94764 0.92733 0.92540 0.76285 0.90029 0.88843 0.91323 0.90988 0.88526 0.88849 0.88866 0.88920 0.87763 0.87731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.63 10.24 37.16 0.38 -2.25 16 2 C 0.13 2.20 6.01 -4.04 -0.02 2.18 16 3 N -0.99 -19.49 2.84 -115.67 -0.33 -19.82 16 4 C 0.24 5.68 5.48 -5.20 -0.03 5.65 16 5 C -0.54 -12.84 7.94 -34.44 -0.27 -13.12 16 6 H 0.06 1.45 6.74 -52.48 -0.35 1.10 16 7 C 0.07 1.64 5.46 -17.82 -0.10 1.54 16 8 N -0.88 -24.02 13.29 55.43 0.74 -23.29 16 9 Si 0.89 18.82 29.54 -169.99 -5.02 13.80 16 10 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 11 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 12 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 13 S 2.79 53.90 6.11 -107.50 -0.66 53.24 16 14 O -1.00 -20.06 17.09 -57.17 -0.98 -21.04 16 15 O -0.98 -22.64 16.09 -57.17 -0.92 -23.56 16 16 N -1.13 -17.61 6.05 -10.61 -0.06 -17.68 16 17 C 0.12 1.82 6.16 -4.04 -0.02 1.80 16 18 C -0.14 -1.75 5.68 -26.73 -0.15 -1.91 16 19 C 0.14 1.74 6.01 -4.04 -0.02 1.72 16 20 N -0.63 -7.01 2.96 -178.76 -0.53 -7.54 16 21 C 0.06 0.40 7.69 -3.15 -0.02 0.38 16 22 C 0.04 0.24 8.22 37.72 0.31 0.55 16 23 O -0.33 -3.89 11.11 -38.58 -0.43 -4.32 16 24 C 0.64 9.09 8.85 53.71 0.48 9.57 16 25 O -0.52 -9.65 17.55 -19.10 -0.34 -9.98 16 26 H 0.05 0.90 8.11 -51.93 -0.42 0.48 16 27 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 28 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.08 1.33 8.05 -51.93 -0.42 0.91 16 30 H 0.06 0.91 7.64 -51.93 -0.40 0.51 16 31 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.05 1.43 6.83 -51.93 -0.35 1.08 16 33 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 34 H 0.41 5.14 8.66 -34.46 -0.30 4.84 16 35 H 0.08 1.45 7.72 -51.93 -0.40 1.05 16 36 H 0.09 1.55 5.58 -51.93 -0.29 1.26 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.10 1.33 7.93 -51.93 -0.41 0.92 16 40 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 43 H 0.10 0.36 8.14 -51.93 -0.42 -0.07 16 44 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 LS Contribution 378.69 15.07 5.71 5.71 Total: -1.00 -34.47 378.69 -9.01 -43.48 By element: Atomic # 1 Polarization: 11.60 SS G_CDS: -6.71 Total: 4.89 kcal Atomic # 6 Polarization: 5.59 SS G_CDS: 0.52 Total: 6.11 kcal Atomic # 7 Polarization: -68.14 SS G_CDS: -0.19 Total: -68.32 kcal Atomic # 8 Polarization: -56.25 SS G_CDS: -2.66 Total: -58.91 kcal Atomic # 14 Polarization: 18.82 SS G_CDS: -5.02 Total: 13.80 kcal Atomic # 16 Polarization: 53.90 SS G_CDS: -0.66 Total: 53.24 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -34.47 -9.01 -43.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495709560.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.799 kcal (2) G-P(sol) polarization free energy of solvation -34.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds