Wall clock time and date at job start Tue Mar 31 2020 18:13:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46500 * 109.47165 * 2 1 4 4 C 1.46495 * 119.99980 * 274.06100 * 3 2 1 5 5 C 1.50693 * 109.47410 * 280.93228 * 4 3 2 6 6 H 1.08004 * 120.00114 * 3.25479 * 5 4 3 7 7 C 1.37880 * 120.00432 * 183.25853 * 5 4 3 8 8 N 1.31512 * 119.99665 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 120.00296 * 179.97438 * 7 5 4 10 10 H 1.48495 * 109.46984 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.47111 * 120.00015 * 9 7 5 12 12 H 1.48497 * 109.47107 * 239.99913 * 9 7 5 13 13 S 1.65602 * 119.99912 * 94.06137 * 3 2 1 14 14 O 1.42098 * 106.40490 * 336.46909 * 13 3 2 15 15 O 1.42107 * 106.40008 * 203.55491 * 13 3 2 16 16 N 1.65592 * 107.21985 * 90.01383 * 13 3 2 17 17 C 1.46510 * 119.99885 * 65.59725 * 16 13 3 18 18 C 1.52997 * 109.47022 * 164.33148 * 17 16 13 19 19 C 1.52996 * 109.47200 * 179.97438 * 18 17 16 20 20 N 1.46498 * 109.47300 * 180.02562 * 19 18 17 21 21 C 1.47090 * 125.55950 * 90.00498 * 20 19 18 22 22 C 1.54086 * 103.77785 * 180.02562 * 21 20 19 23 23 O 1.45703 * 104.12956 * 359.92824 * 22 21 20 24 24 C 1.34000 * 125.55755 * 270.02312 * 20 19 18 25 25 O 1.21507 * 123.07541 * 0.02562 * 24 20 19 26 26 H 1.09004 * 109.47324 * 305.05126 * 1 2 3 27 27 H 1.08993 * 109.47226 * 65.05198 * 1 2 3 28 28 H 1.09002 * 109.47209 * 185.05296 * 1 2 3 29 29 H 1.09000 * 109.47416 * 240.00178 * 2 1 3 30 30 H 1.09003 * 109.47122 * 119.99704 * 2 1 3 31 31 H 1.09004 * 109.47313 * 40.93597 * 4 3 2 32 32 H 1.09004 * 109.47363 * 160.92786 * 4 3 2 33 33 H 0.97001 * 120.00462 * 180.02562 * 8 7 5 34 34 H 0.96996 * 120.00235 * 245.59816 * 16 13 3 35 35 H 1.09000 * 109.46846 * 44.33275 * 17 16 13 36 36 H 1.09000 * 109.47134 * 284.33283 * 17 16 13 37 37 H 1.09000 * 109.47206 * 60.00348 * 18 17 16 38 38 H 1.09000 * 109.47277 * 300.00048 * 18 17 16 39 39 H 1.09005 * 109.47288 * 59.99881 * 19 18 17 40 40 H 1.09000 * 109.47150 * 300.00255 * 19 18 17 41 41 H 1.08995 * 110.57035 * 61.44307 * 21 20 19 42 42 H 1.09003 * 110.69004 * 298.65289 * 21 20 19 43 43 H 1.09002 * 110.52449 * 118.62228 * 22 21 20 44 44 H 1.09000 * 110.52337 * 241.22799 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1778 2.1017 -1.2655 5 6 3.4575 1.6682 -1.9327 6 1 4.0625 0.8921 -1.4876 7 6 3.8563 2.2624 -3.1112 8 7 3.1199 3.2078 -3.6529 9 14 5.4430 1.7254 -3.9378 10 1 6.0823 0.6537 -3.1330 11 1 5.1429 1.2102 -5.2978 12 1 6.3649 2.8851 -4.0401 13 16 2.3901 2.1280 1.4306 14 8 1.6493 1.4547 2.4391 15 8 2.2868 3.5252 1.1925 16 7 3.9877 1.8234 1.7418 17 6 5.0227 2.3685 0.8597 18 6 6.3822 2.2861 1.5568 19 6 7.4631 2.8547 0.6354 20 7 8.7649 2.7751 1.3026 21 6 9.6984 1.6411 1.2243 22 6 10.8867 2.0828 2.1001 23 8 10.5057 3.4065 2.5753 24 6 9.2992 3.7235 2.0841 25 8 8.7415 4.7757 2.3256 26 1 -0.3634 0.5902 0.8413 27 1 -0.3633 0.4334 -0.9317 28 1 -0.3634 -1.0237 0.0905 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.3340 1.8796 -1.9189 32 1 2.2143 3.1737 -1.0712 33 1 3.4002 3.6257 -4.4823 34 1 4.2383 1.2842 2.5081 35 1 4.7941 3.4095 0.6313 36 1 5.0528 1.7919 -0.0648 37 1 6.6108 1.2451 1.7852 38 1 6.3520 2.8627 2.4813 39 1 7.2347 3.8957 0.4065 40 1 7.4931 2.2777 -0.2888 41 1 10.0200 1.4802 0.1954 42 1 9.2411 0.7374 1.6271 43 1 11.0183 1.3991 2.9388 44 1 11.7993 2.1380 1.5065 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000495709560.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:13:43 Heat of formation + Delta-G solvation = -177.423478 kcal Electronic energy + Delta-G solvation = -28231.830545 eV Core-core repulsion = 24117.294008 eV Total energy + Delta-G solvation = -4114.536537 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.139 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -42.48991 -38.42076 -38.31672 -37.78956 -37.56775 -36.87875 -36.07206 -34.61647 -32.46448 -31.48482 -30.24624 -28.46177 -26.69118 -24.90155 -24.48932 -23.37470 -23.12089 -21.85082 -20.30034 -18.68820 -18.56549 -18.46868 -18.20912 -18.08773 -17.78489 -17.18764 -16.74616 -16.28142 -16.00448 -15.65984 -15.31819 -15.05159 -14.89823 -14.81221 -14.58472 -14.56662 -13.81522 -13.74611 -13.64521 -13.55315 -13.32172 -13.17036 -13.09250 -13.02044 -12.79026 -12.71299 -12.59729 -12.52844 -12.25818 -12.00475 -11.99635 -11.74062 -11.64986 -11.60124 -11.52696 -10.52776 -10.36068 -9.95682 -9.73716 -8.09072 -6.22949 -0.27173 1.41033 1.48896 1.51004 1.59214 1.62356 2.05403 2.49332 2.61844 2.65579 3.23658 3.38817 3.46812 3.67500 3.92790 3.99485 4.03362 4.11641 4.16829 4.45890 4.48741 4.50347 4.55039 4.60382 4.70548 4.76893 4.78153 4.83670 4.89175 5.02231 5.16191 5.19887 5.27506 5.33528 5.38985 5.44816 5.58165 5.83684 5.94198 6.18163 6.26932 6.32988 6.89438 6.90496 7.46901 8.99662 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.010723 B = 0.004106 C = 0.003303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2610.506181 B = 6817.902949 C = 8473.845649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.123 3.877 3 N -0.994 5.994 4 C 0.257 3.743 5 C -0.532 4.532 6 H 0.085 0.915 7 C 0.009 3.991 8 N -0.933 5.933 9 Si 0.954 3.046 10 H -0.239 1.239 11 H -0.292 1.292 12 H -0.284 1.284 13 S 2.798 3.202 14 O -1.006 7.006 15 O -1.023 7.023 16 N -1.113 6.113 17 C 0.118 3.882 18 C -0.128 4.128 19 C 0.142 3.858 20 N -0.622 5.622 21 C 0.058 3.942 22 C 0.036 3.964 23 O -0.350 6.350 24 C 0.634 3.366 25 O -0.580 6.580 26 H 0.042 0.958 27 H 0.047 0.953 28 H 0.091 0.909 29 H 0.085 0.915 30 H 0.087 0.913 31 H 0.013 0.987 32 H 0.017 0.983 33 H 0.263 0.737 34 H 0.423 0.577 35 H 0.050 0.950 36 H 0.091 0.909 37 H 0.103 0.897 38 H 0.058 0.942 39 H 0.068 0.932 40 H 0.116 0.884 41 H 0.116 0.884 42 H 0.119 0.881 43 H 0.132 0.868 44 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.093 -12.848 7.999 20.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.002 4.002 3 N -0.835 5.835 4 C 0.133 3.867 5 C -0.571 4.571 6 H 0.103 0.897 7 C -0.190 4.190 8 N -0.572 5.572 9 Si 0.778 3.222 10 H -0.161 1.161 11 H -0.218 1.218 12 H -0.210 1.210 13 S 2.806 3.194 14 O -0.990 6.990 15 O -1.007 7.007 16 N -0.876 5.876 17 C -0.009 4.009 18 C -0.168 4.168 19 C 0.020 3.980 20 N -0.369 5.369 21 C -0.063 4.063 22 C -0.038 4.038 23 O -0.260 6.260 24 C 0.388 3.612 25 O -0.468 6.468 26 H 0.061 0.939 27 H 0.066 0.934 28 H 0.109 0.891 29 H 0.104 0.896 30 H 0.105 0.895 31 H 0.031 0.969 32 H 0.035 0.965 33 H 0.071 0.929 34 H 0.259 0.741 35 H 0.068 0.932 36 H 0.109 0.891 37 H 0.122 0.878 38 H 0.077 0.923 39 H 0.086 0.914 40 H 0.134 0.866 41 H 0.134 0.866 42 H 0.137 0.863 43 H 0.150 0.850 44 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 13.304 -11.462 8.502 19.510 hybrid contribution 0.527 0.082 -0.740 0.912 sum 13.831 -11.380 7.762 19.521 Atomic orbital electron populations 1.22206 0.96343 1.03113 1.01158 1.21248 0.94301 0.81189 1.03512 1.57601 1.79439 1.24169 1.22321 1.18778 0.96779 0.91019 0.80140 1.21828 1.07095 1.20888 1.07268 0.89724 1.25868 1.00522 0.94733 0.97900 1.70103 1.40280 1.26676 1.20182 0.85566 0.79445 0.78743 0.78397 1.16121 1.21824 1.20990 1.01144 0.73300 0.72661 0.72300 1.93527 1.70613 1.76254 1.58588 1.93533 1.86800 1.34198 1.86132 1.55523 1.24110 1.68341 1.39601 1.21311 0.87051 0.98891 0.93632 1.22044 0.92301 1.03584 0.98847 1.21320 0.78304 1.02951 0.95381 1.48124 1.20312 1.18512 1.49926 1.23247 0.88856 0.90310 1.03905 1.24785 0.98970 0.79519 1.00512 1.87329 1.32313 1.38318 1.68051 1.18828 0.80290 0.84014 0.78080 1.91012 1.63674 1.26749 1.65405 0.93876 0.93421 0.89060 0.89614 0.89485 0.96880 0.96481 0.92854 0.74141 0.93191 0.89144 0.87828 0.92313 0.91379 0.86586 0.86630 0.86253 0.84966 0.85146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.03 10.24 71.98 0.74 -4.30 16 2 C 0.12 3.87 6.01 86.38 0.52 4.39 16 3 N -0.99 -38.87 2.84 -519.86 -1.48 -40.35 16 4 C 0.26 12.37 5.48 85.63 0.47 12.84 16 5 C -0.53 -25.07 7.94 25.60 0.20 -24.87 16 6 H 0.08 3.58 6.74 -2.91 -0.02 3.56 16 7 C 0.01 0.45 5.46 84.66 0.46 0.91 16 8 N -0.93 -52.14 13.29 21.45 0.28 -51.85 16 9 Si 0.95 37.57 29.54 68.60 2.03 39.59 16 10 H -0.24 -8.05 7.11 99.48 0.71 -7.34 16 11 H -0.29 -11.85 7.11 99.48 0.71 -11.15 16 12 H -0.28 -11.23 7.11 99.48 0.71 -10.52 16 13 S 2.80 108.21 6.11 -56.49 -0.34 107.86 16 14 O -1.01 -39.23 17.09 -128.00 -2.19 -41.42 16 15 O -1.02 -49.25 16.09 -128.00 -2.06 -51.31 16 16 N -1.11 -33.24 6.05 -187.47 -1.13 -34.37 16 17 C 0.12 3.58 6.16 86.38 0.53 4.11 16 18 C -0.13 -2.90 5.68 30.59 0.17 -2.73 16 19 C 0.14 3.22 6.01 86.38 0.52 3.74 16 20 N -0.62 -12.55 2.96 -951.05 -2.82 -15.37 16 21 C 0.06 0.48 7.69 86.63 0.67 1.15 16 22 C 0.04 0.27 8.22 72.35 0.59 0.87 16 23 O -0.35 -7.70 11.11 -50.07 -0.56 -8.25 16 24 C 0.63 17.79 8.85 129.91 1.15 18.94 16 25 O -0.58 -22.62 17.55 19.65 0.34 -22.27 16 26 H 0.04 1.37 8.11 -2.39 -0.02 1.35 16 27 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 28 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 29 H 0.09 2.63 8.05 -2.39 -0.02 2.61 16 30 H 0.09 2.31 7.64 -2.39 -0.02 2.29 16 31 H 0.01 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.02 0.95 6.83 -2.38 -0.02 0.94 16 33 H 0.26 13.99 8.31 -92.71 -0.77 13.22 16 34 H 0.42 9.63 8.66 -96.75 -0.84 8.79 16 35 H 0.05 1.84 7.72 -2.39 -0.02 1.83 16 36 H 0.09 2.83 5.58 -2.39 -0.01 2.81 16 37 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 38 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 39 H 0.07 1.93 7.93 -2.38 -0.02 1.92 16 40 H 0.12 2.11 8.14 -2.39 -0.02 2.09 16 41 H 0.12 0.51 8.14 -2.39 -0.02 0.49 16 42 H 0.12 0.42 8.14 -2.39 -0.02 0.40 16 43 H 0.13 0.28 8.14 -2.39 -0.02 0.26 16 44 H 0.13 0.33 8.14 -2.39 -0.02 0.31 16 Total: -1.00 -79.77 378.69 -1.72 -81.49 By element: Atomic # 1 Polarization: 21.03 SS G_CDS: 0.17 Total: 21.20 kcal Atomic # 6 Polarization: 9.03 SS G_CDS: 6.03 Total: 15.05 kcal Atomic # 7 Polarization: -136.80 SS G_CDS: -5.15 Total: -141.95 kcal Atomic # 8 Polarization: -118.80 SS G_CDS: -4.46 Total: -123.25 kcal Atomic # 14 Polarization: 37.57 SS G_CDS: 2.03 Total: 39.59 kcal Atomic # 16 Polarization: 108.21 SS G_CDS: -0.34 Total: 107.86 kcal Total: -79.77 -1.72 -81.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495709560.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.935 kcal (2) G-P(sol) polarization free energy of solvation -79.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds