Wall clock time and date at job start Tue Mar 31 2020 18:35:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42901 * 113.99946 * 2 1 4 4 C 1.53004 * 109.47099 * 184.66575 * 3 2 1 5 5 N 1.46506 * 109.46609 * 65.10378 * 4 3 2 6 6 C 1.46504 * 119.99930 * 75.44632 * 5 4 3 7 7 C 1.50702 * 109.46892 * 67.05693 * 6 5 4 8 8 H 1.08001 * 120.00483 * 357.92999 * 7 6 5 9 9 C 1.37881 * 119.99430 * 177.93855 * 7 6 5 10 10 N 1.31506 * 120.00332 * 359.97438 * 9 7 6 11 11 Si 1.86802 * 119.99546 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.47300 * 359.97438 * 11 9 7 13 13 H 1.48507 * 109.46937 * 119.99750 * 11 9 7 14 14 H 1.48498 * 109.47229 * 239.99456 * 11 9 7 15 15 S 1.65597 * 120.00177 * 255.44133 * 5 4 3 16 16 O 1.42111 * 106.39919 * 19.77991 * 15 5 4 17 17 O 1.42094 * 106.40314 * 152.69489 * 15 5 4 18 18 N 1.65597 * 107.21824 * 266.24211 * 15 5 4 19 19 C 1.47265 * 121.35080 * 263.96586 * 18 15 5 20 20 C 1.53473 * 107.93140 * 118.51541 * 19 18 15 21 21 N 1.45644 * 110.73992 * 46.91548 * 20 19 18 22 22 C 1.46500 * 117.70614 * 158.00127 * 21 20 19 23 23 C 1.33382 * 124.58697 * 337.97893 * 21 20 19 24 24 O 1.21283 * 118.48811 * 184.34046 * 23 21 20 25 25 C 1.47042 * 121.35563 * 84.25586 * 18 15 5 26 26 H 1.08998 * 109.47708 * 64.68788 * 1 2 3 27 27 H 1.08998 * 109.47078 * 184.69603 * 1 2 3 28 28 H 1.09002 * 109.46648 * 304.68944 * 1 2 3 29 29 H 1.08998 * 109.47088 * 64.67164 * 3 2 1 30 30 H 1.08993 * 109.47163 * 304.67170 * 3 2 1 31 31 H 1.08998 * 109.46893 * 185.10242 * 4 3 2 32 32 H 1.08996 * 109.47147 * 305.10743 * 4 3 2 33 33 H 1.08999 * 109.46731 * 187.05552 * 6 5 4 34 34 H 1.08994 * 109.47055 * 307.05606 * 6 5 4 35 35 H 0.97006 * 119.99926 * 180.02562 * 10 9 7 36 36 H 1.09001 * 109.72373 * 238.19285 * 19 18 15 37 37 H 1.09002 * 109.72139 * 358.84812 * 19 18 15 38 38 H 1.09004 * 109.32860 * 286.52616 * 20 19 18 39 39 H 1.09004 * 109.09895 * 167.15322 * 20 19 18 40 40 H 1.09000 * 109.46869 * 179.97438 * 22 21 20 41 41 H 1.08996 * 109.47275 * 299.97937 * 22 21 20 42 42 H 1.09000 * 109.46619 * 59.97816 * 22 21 20 43 43 H 1.09000 * 109.57213 * 342.53289 * 25 18 15 44 44 H 1.09006 * 109.57235 * 102.77241 * 25 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5311 1.1866 -0.1173 5 7 3.8768 0.6107 -1.4194 6 6 3.7908 1.4318 -2.6296 7 6 4.8347 2.5173 -2.5754 8 1 5.4739 2.6091 -1.7097 9 6 4.9737 3.3934 -3.6310 10 7 4.1956 3.2814 -4.6853 11 14 6.2672 4.7393 -3.5636 12 1 7.0064 4.6516 -2.2786 13 1 7.2161 4.5710 -4.6935 14 1 5.6072 6.0657 -3.6649 15 16 4.3649 -0.9683 -1.5231 16 8 3.9137 -1.6065 -0.3362 17 8 4.0130 -1.4123 -2.8262 18 7 6.0196 -0.9752 -1.4575 19 6 6.8348 -1.0129 -2.6834 20 6 7.6836 0.2650 -2.7259 21 7 8.3195 0.5049 -1.4378 22 6 9.5142 1.3525 -1.4153 23 6 7.8901 0.0075 -0.2771 24 8 8.4572 0.3429 0.7412 25 6 6.7345 -0.9501 -0.1728 26 1 -0.3634 0.4394 -0.9289 27 1 -0.3633 -1.0242 0.0841 28 1 -0.3633 0.5849 0.8450 29 1 1.7563 1.8162 0.9289 30 1 1.6239 1.8751 -0.8451 31 1 3.9809 2.1753 -0.0264 32 1 3.9075 0.5417 0.6767 33 1 3.9620 0.8065 -3.5058 34 1 2.8006 1.8829 -2.6930 35 1 4.2937 3.8975 -5.4281 36 1 7.4842 -1.8882 -2.6664 37 1 6.1840 -1.0540 -3.5568 38 1 7.0461 1.1134 -2.9750 39 1 8.4524 0.1572 -3.4910 40 1 9.8769 1.4420 -0.3913 41 1 10.2891 0.9047 -2.0374 42 1 9.2654 2.3413 -1.8004 43 1 6.0576 -0.6208 0.6154 44 1 7.1055 -1.9488 0.0581 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000554534096.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:35:42 Heat of formation + Delta-G solvation = -135.385884 kcal Electronic energy + Delta-G solvation = -30045.871808 eV Core-core repulsion = 25933.158158 eV Total energy + Delta-G solvation = -4112.713650 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.139 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.14765 -37.75968 -36.79814 -36.49333 -35.47710 -35.24366 -34.64745 -32.66708 -29.94507 -29.43349 -27.94904 -26.83653 -25.83557 -25.03196 -23.49629 -23.09774 -21.44913 -19.24732 -18.12139 -17.46443 -17.12538 -16.99720 -16.52304 -16.21584 -15.84292 -15.66479 -15.50750 -15.18707 -14.76926 -14.49141 -14.30155 -13.90821 -13.53273 -13.28420 -12.82649 -12.75928 -12.54484 -12.49601 -12.17001 -11.90366 -11.86847 -11.78932 -11.68650 -11.56950 -11.42395 -11.31250 -11.22212 -11.02960 -10.99607 -10.71141 -10.55859 -10.22986 -9.99736 -9.76632 -9.29987 -8.86521 -8.64234 -8.48258 -8.08579 -6.21863 -4.28126 1.11796 2.73530 3.08701 3.13561 3.24455 3.26515 3.39004 4.03417 4.17451 4.25965 4.56377 4.79815 4.87375 5.11025 5.20907 5.28626 5.39992 5.42087 5.47004 5.49716 5.54961 5.57701 5.64471 5.65728 5.69851 5.73243 5.87126 5.90967 5.97246 6.00374 6.28535 6.31301 6.39262 6.51406 6.65319 7.28056 7.32735 7.47303 7.56990 7.59034 7.75820 8.06875 8.26343 8.78057 9.37635 10.85655 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.009340 B = 0.007138 C = 0.004987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2997.063648 B = 3921.681892 C = 5613.540363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.381 6.381 3 C 0.044 3.956 4 C 0.135 3.865 5 N -0.984 5.984 6 C 0.248 3.752 7 C -0.533 4.533 8 H 0.063 0.937 9 C 0.066 3.934 10 N -0.886 5.886 11 Si 0.886 3.114 12 H -0.272 1.272 13 H -0.282 1.282 14 H -0.284 1.284 15 S 2.784 3.216 16 O -0.975 6.975 17 O -0.976 6.976 18 N -1.013 6.013 19 C 0.112 3.888 20 C 0.086 3.914 21 N -0.592 5.592 22 C 0.069 3.931 23 C 0.514 3.486 24 O -0.560 6.560 25 C 0.122 3.878 26 H 0.039 0.961 27 H 0.080 0.920 28 H 0.036 0.964 29 H 0.051 0.949 30 H 0.060 0.940 31 H 0.095 0.905 32 H 0.076 0.924 33 H 0.051 0.949 34 H 0.030 0.970 35 H 0.264 0.736 36 H 0.074 0.926 37 H 0.115 0.885 38 H 0.103 0.897 39 H 0.081 0.919 40 H 0.089 0.911 41 H 0.058 0.942 42 H 0.061 0.939 43 H 0.114 0.886 44 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.173 -5.345 4.924 7.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.300 6.300 3 C -0.034 4.034 4 C 0.008 3.992 5 N -0.825 5.825 6 C 0.126 3.874 7 C -0.572 4.572 8 H 0.081 0.919 9 C -0.137 4.137 10 N -0.524 5.524 11 Si 0.714 3.286 12 H -0.196 1.196 13 H -0.208 1.208 14 H -0.210 1.210 15 S 2.794 3.206 16 O -0.959 6.959 17 O -0.960 6.960 18 N -0.852 5.852 19 C -0.014 4.014 20 C -0.038 4.038 21 N -0.324 5.324 22 C -0.074 4.074 23 C 0.301 3.699 24 O -0.440 6.440 25 C -0.007 4.007 26 H 0.057 0.943 27 H 0.099 0.901 28 H 0.054 0.946 29 H 0.069 0.931 30 H 0.078 0.922 31 H 0.113 0.887 32 H 0.094 0.906 33 H 0.069 0.931 34 H 0.048 0.952 35 H 0.074 0.926 36 H 0.092 0.908 37 H 0.133 0.867 38 H 0.121 0.879 39 H 0.099 0.901 40 H 0.107 0.893 41 H 0.076 0.924 42 H 0.080 0.920 43 H 0.132 0.868 44 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 2.944 -6.044 5.156 8.472 hybrid contribution 0.685 1.629 -0.243 1.784 sum 3.629 -4.415 4.914 7.537 Atomic orbital electron populations 1.22692 0.82064 1.02157 0.99615 1.88001 1.18820 1.27863 1.95309 1.23025 0.95279 0.84914 1.00204 1.21120 0.92606 1.00932 0.84574 1.57663 1.79695 1.31000 1.14137 1.19140 0.97800 0.90331 0.80132 1.21482 1.18493 1.13935 1.03319 0.91872 1.24932 0.96075 0.97431 0.95301 1.69945 1.38170 1.37523 1.06781 0.86632 0.81715 0.82140 0.78115 1.19625 1.20824 1.20964 1.01962 0.71916 0.73612 0.73140 1.93582 1.79071 1.74136 1.49135 1.93564 1.81438 1.80553 1.40454 1.58691 1.25858 1.89958 1.10676 1.21803 0.94854 0.96918 0.87783 1.22138 0.97400 1.00409 0.83828 1.46944 1.28821 1.49123 1.07492 1.21779 0.86840 0.94556 1.04203 1.20249 0.85101 0.81509 0.83064 1.90690 1.58342 1.60768 1.34168 1.21371 0.93254 0.99539 0.86522 0.94264 0.90132 0.94551 0.93081 0.92187 0.88732 0.90552 0.93094 0.95177 0.92589 0.90763 0.86714 0.87860 0.90096 0.89257 0.92373 0.92021 0.86844 0.88153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 11.01 101.05 1.11 1.54 16 2 O -0.38 -6.78 10.35 -35.23 -0.36 -7.14 16 3 C 0.04 0.72 6.19 37.16 0.23 0.95 16 4 C 0.13 2.34 5.82 -4.04 -0.02 2.31 16 5 N -0.98 -19.45 2.90 -115.66 -0.34 -19.79 16 6 C 0.25 5.70 5.47 -5.19 -0.03 5.67 16 7 C -0.53 -12.66 7.70 -34.44 -0.27 -12.92 16 8 H 0.06 1.50 7.54 -52.49 -0.40 1.10 16 9 C 0.07 1.64 5.46 -17.82 -0.10 1.54 16 10 N -0.89 -23.53 13.29 55.43 0.74 -22.79 16 11 Si 0.89 19.34 29.54 -169.99 -5.02 14.32 16 12 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 13 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 14 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 15 S 2.78 53.53 6.08 -107.50 -0.65 52.87 16 16 O -0.98 -19.72 15.68 -57.57 -0.90 -20.62 16 17 O -0.98 -21.23 15.32 -57.17 -0.88 -22.11 16 18 N -1.01 -16.19 3.35 -114.54 -0.38 -16.57 16 19 C 0.11 1.58 6.59 -3.38 -0.02 1.55 16 20 C 0.09 1.23 6.60 -4.26 -0.03 1.20 16 21 N -0.59 -8.92 3.20 -182.47 -0.58 -9.50 16 22 C 0.07 0.91 10.43 59.85 0.62 1.54 16 23 C 0.51 8.36 7.58 -11.73 -0.09 8.27 16 24 O -0.56 -10.48 15.97 5.55 0.09 -10.39 16 25 C 0.12 1.79 6.40 -5.02 -0.03 1.76 16 26 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 27 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.04 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.06 1.03 7.36 -51.93 -0.38 0.65 16 31 H 0.09 1.60 7.44 -51.93 -0.39 1.22 16 32 H 0.08 1.24 7.18 -51.93 -0.37 0.87 16 33 H 0.05 1.28 6.92 -51.93 -0.36 0.92 16 34 H 0.03 0.74 7.38 -51.93 -0.38 0.36 16 35 H 0.26 6.70 8.31 -40.82 -0.34 6.36 16 36 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.11 1.70 6.93 -51.93 -0.36 1.34 16 38 H 0.10 1.79 7.02 -51.93 -0.36 1.43 16 39 H 0.08 0.91 8.07 -51.93 -0.42 0.49 16 40 H 0.09 1.26 6.59 -51.93 -0.34 0.92 16 41 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.11 1.65 7.66 -51.93 -0.40 1.25 16 44 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 LS Contribution 369.79 15.07 5.57 5.57 Total: -1.00 -32.17 369.79 -8.02 -40.19 By element: Atomic # 1 Polarization: 9.22 SS G_CDS: -6.68 Total: 2.54 kcal Atomic # 6 Polarization: 12.04 SS G_CDS: 1.38 Total: 13.42 kcal Atomic # 7 Polarization: -68.08 SS G_CDS: -0.57 Total: -68.65 kcal Atomic # 8 Polarization: -58.21 SS G_CDS: -2.05 Total: -60.26 kcal Atomic # 14 Polarization: 19.34 SS G_CDS: -5.02 Total: 14.32 kcal Atomic # 16 Polarization: 53.53 SS G_CDS: -0.65 Total: 52.87 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.17 -8.02 -40.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000554534096.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.196 kcal (2) G-P(sol) polarization free energy of solvation -32.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds