Wall clock time and date at job start Tue Mar 31 2020 19:25:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34759 * 116.99969 * 2 1 4 4 O 1.21508 * 119.99898 * 359.97438 * 3 2 1 5 5 C 1.47399 * 119.99926 * 180.02562 * 3 2 1 6 6 C 1.39660 * 120.48382 * 359.97438 * 5 3 2 7 7 N 1.31636 * 120.51011 * 180.02562 * 6 5 3 8 8 C 1.32646 * 121.64200 * 0.02562 * 7 6 5 9 9 N 1.38430 * 119.53101 * 179.97438 * 8 7 6 10 10 C 1.46841 * 111.00110 * 323.62253 * 9 8 7 11 11 C 1.53039 * 109.52159 * 185.83766 * 10 9 8 12 12 C 1.53120 * 109.27672 * 300.81981 * 11 10 9 13 13 C 1.50702 * 109.52087 * 177.55967 * 12 11 10 14 14 H 1.08003 * 120.00319 * 0.02562 * 13 12 11 15 15 C 1.37874 * 119.99832 * 179.97438 * 13 12 11 16 16 N 1.31515 * 120.00450 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 120.00117 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.46818 * 359.97438 * 17 15 13 19 19 H 1.48489 * 109.47705 * 119.99748 * 17 15 13 20 20 H 1.48499 * 109.46836 * 240.00324 * 17 15 13 21 21 C 1.53118 * 109.16066 * 57.65535 * 12 11 10 22 22 C 1.46853 * 110.99638 * 87.83011 * 9 8 7 23 23 C 1.39376 * 120.93520 * 0.25692 * 8 7 6 24 24 N 1.48019 * 120.30594 * 179.71943 * 23 8 7 25 25 O 1.21800 * 119.99865 * 174.22473 * 24 23 8 26 26 O 1.21797 * 120.00191 * 354.22988 * 24 23 8 27 27 C 1.36874 * 119.38337 * 359.49059 * 23 8 7 28 28 H 1.08999 * 109.47009 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47844 * 300.00296 * 1 2 3 30 30 H 1.09005 * 109.46788 * 60.00503 * 1 2 3 31 31 H 1.07995 * 119.74417 * 0.04732 * 6 5 3 32 32 H 1.08999 * 109.46584 * 65.81905 * 10 9 8 33 33 H 1.09002 * 109.46362 * 305.85050 * 10 9 8 34 34 H 1.08999 * 109.50558 * 60.76000 * 11 10 9 35 35 H 1.09001 * 109.50321 * 180.87675 * 11 10 9 36 36 H 1.09000 * 109.52292 * 297.74877 * 12 11 10 37 37 H 0.96992 * 120.00392 * 179.97438 * 16 15 13 38 38 H 1.09008 * 109.50012 * 182.40433 * 21 12 11 39 39 H 1.09000 * 109.50424 * 62.29216 * 21 12 11 40 40 H 1.08998 * 109.46126 * 294.17815 * 22 9 8 41 41 H 1.09002 * 109.46208 * 54.14076 * 22 9 8 42 42 H 1.08005 * 120.75405 * 180.24838 * 27 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2007 0.0000 4 8 1.4020 2.2198 -0.0005 5 6 3.5357 1.2778 -0.0006 6 6 4.3062 0.1130 -0.0006 7 7 5.6208 0.1813 -0.0006 8 6 6.2572 1.3451 -0.0001 9 7 7.6413 1.3660 0.0004 10 6 8.1838 0.2701 0.8134 11 6 9.7048 0.4097 0.9103 12 6 10.3065 0.3722 -0.4972 13 6 11.7982 0.5692 -0.4126 14 1 12.2710 0.7071 0.5486 15 6 12.5594 0.5725 -1.5621 16 7 11.9839 0.4031 -2.7325 17 14 14.4085 0.8160 -1.4572 18 1 14.8059 0.9827 -0.0362 19 1 15.0971 -0.3691 -2.0285 20 1 14.7922 2.0287 -2.2236 21 6 9.6891 1.4933 -1.3377 22 6 8.1687 1.3223 -1.3694 23 6 5.5520 2.5473 0.0058 24 7 6.2763 3.8381 0.0126 25 8 5.6591 4.8833 -0.0884 26 8 7.4895 3.8552 0.1190 27 6 4.1835 2.5232 0.0006 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3635 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 3.8198 -0.8512 -0.0009 32 1 7.9355 -0.6842 0.3489 33 1 7.7510 0.3108 1.8130 34 1 9.9536 1.3576 1.3873 35 1 10.1088 -0.4126 1.5009 36 1 10.0910 -0.5909 -0.9599 37 1 12.5193 0.4058 -3.5412 38 1 10.0820 1.4452 -2.3534 39 1 9.9378 2.4583 -0.8961 40 1 7.9205 0.3631 -1.8237 41 1 7.7248 2.1272 -1.9553 42 1 3.6149 3.4414 0.0010 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000558718516.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:25:20 Heat of formation + Delta-G solvation = -28.144133 kcal Electronic energy + Delta-G solvation = -29237.834883 eV Core-core repulsion = 24994.327633 eV Total energy + Delta-G solvation = -4243.507250 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.136 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.29406 -41.21454 -40.41036 -38.30377 -36.97573 -36.27058 -34.42611 -33.56674 -32.24956 -30.69517 -30.04734 -28.25626 -26.83032 -26.10063 -24.27695 -23.73449 -22.29093 -22.08641 -21.45572 -19.58448 -18.94224 -18.57402 -17.89339 -17.66823 -17.38645 -17.14688 -16.88946 -16.58288 -16.32942 -15.09132 -14.74572 -14.50002 -14.19672 -14.13533 -13.93045 -13.61072 -13.42111 -12.82380 -12.68836 -12.58516 -12.43799 -11.69741 -11.58638 -11.33355 -11.31028 -11.15922 -11.01107 -10.97331 -10.92320 -10.81688 -10.53884 -10.44603 -10.24650 -10.22318 -9.94509 -9.52203 -9.10023 -8.84079 -8.43463 -8.33836 -6.00956 -4.05571 -0.42696 -0.05717 1.23964 1.33090 1.90587 2.08677 2.95203 3.18748 3.30949 3.39552 3.43408 3.74531 3.93696 4.03017 4.25931 4.38027 4.44585 4.63005 4.72343 4.77941 5.06083 5.15236 5.29675 5.30658 5.50714 5.58110 5.74665 5.83675 5.87385 6.09124 6.27612 6.40116 6.42425 6.70646 6.74919 6.88378 7.05400 7.14861 7.16112 7.32654 7.38546 7.72106 7.84036 7.97434 8.05803 8.42679 8.97823 9.59534 11.05836 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.021518 B = 0.002852 C = 0.002651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.936641 B = 9815.293641 C =10561.082749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.353 6.353 3 C 0.523 3.477 4 O -0.497 6.497 5 C -0.212 4.212 6 C 0.225 3.775 7 N -0.508 5.508 8 C 0.416 3.584 9 N -0.470 5.470 10 C 0.062 3.938 11 C -0.107 4.107 12 C 0.047 3.953 13 C -0.508 4.508 14 H 0.057 0.943 15 C 0.061 3.939 16 N -0.893 5.893 17 Si 0.891 3.109 18 H -0.273 1.273 19 H -0.286 1.286 20 H -0.284 1.284 21 C -0.104 4.104 22 C 0.073 3.927 23 C -0.104 4.104 24 N 0.031 4.969 25 O -0.196 6.196 26 O -0.075 6.075 27 C 0.060 3.940 28 H 0.107 0.893 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.189 0.811 32 H 0.055 0.945 33 H 0.060 0.940 34 H 0.064 0.936 35 H 0.059 0.941 36 H 0.024 0.976 37 H 0.259 0.741 38 H 0.101 0.899 39 H 0.059 0.941 40 H 0.045 0.955 41 H 0.056 0.944 42 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.517 -2.186 4.705 22.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.269 6.269 3 C 0.367 3.633 4 O -0.386 6.386 5 C -0.217 4.217 6 C 0.064 3.936 7 N -0.222 5.222 8 C 0.184 3.816 9 N -0.191 5.191 10 C -0.064 4.064 11 C -0.145 4.145 12 C 0.029 3.971 13 C -0.546 4.546 14 H 0.075 0.925 15 C -0.140 4.140 16 N -0.532 5.532 17 Si 0.719 3.281 18 H -0.198 1.198 19 H -0.212 1.212 20 H -0.210 1.210 21 C -0.142 4.142 22 C -0.049 4.049 23 C -0.192 4.192 24 N 0.554 4.446 25 O -0.398 6.398 26 O -0.309 6.309 27 C 0.034 3.966 28 H 0.125 0.875 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.205 0.795 32 H 0.074 0.926 33 H 0.079 0.921 34 H 0.082 0.918 35 H 0.078 0.922 36 H 0.042 0.958 37 H 0.069 0.931 38 H 0.120 0.880 39 H 0.077 0.923 40 H 0.063 0.937 41 H 0.074 0.926 42 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -21.435 -2.774 4.687 22.116 hybrid contribution 0.064 0.577 -0.300 0.654 sum -21.371 -2.197 4.387 21.927 Atomic orbital electron populations 1.23366 0.75011 1.04217 1.02976 1.86517 1.24278 1.31820 1.84284 1.20420 0.87880 0.81949 0.73060 1.90897 1.66385 1.35872 1.45405 1.19847 0.91579 0.94217 1.16073 1.23612 0.88546 0.98703 0.82779 1.68636 1.10422 1.26087 1.17012 1.20432 0.93058 0.86032 0.82069 1.59998 0.97444 1.46099 1.15524 1.22286 0.98067 0.90846 0.95158 1.21743 0.90054 1.01455 1.01250 1.18719 0.94673 0.94524 0.89213 1.21188 0.91654 1.48860 0.92877 0.92475 1.24960 0.98434 0.95091 0.95498 1.69851 1.35238 1.50566 0.97586 0.86554 0.85777 0.77637 0.78139 1.19784 1.21217 1.21033 1.21776 0.86867 1.00690 1.04870 1.22462 1.00608 0.99531 0.82340 1.21492 0.92482 0.85671 1.19576 1.43096 1.01599 1.01258 0.98658 1.94532 1.69453 1.20020 1.55767 1.94722 0.94049 1.93548 1.48606 1.21175 0.91531 0.99838 0.84007 0.87511 0.91514 0.91485 0.79461 0.92650 0.92101 0.91774 0.92248 0.95805 0.93075 0.88047 0.92267 0.93687 0.92566 0.80669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.19 10.57 101.05 1.07 1.26 16 2 O -0.35 -2.72 9.83 -40.65 -0.40 -3.12 16 3 C 0.52 5.16 7.89 34.46 0.27 5.43 16 4 O -0.50 -6.07 16.20 -19.27 -0.31 -6.38 16 5 C -0.21 -2.15 5.89 -104.84 -0.62 -2.77 16 6 C 0.23 2.18 10.79 -17.10 -0.18 2.00 16 7 N -0.51 -6.62 9.21 -12.13 -0.11 -6.73 16 8 C 0.42 6.25 5.54 -155.28 -0.86 5.39 16 9 N -0.47 -8.09 2.68 -173.27 -0.46 -8.56 16 10 C 0.06 1.06 4.91 -3.84 -0.02 1.04 16 11 C -0.11 -2.10 5.32 -26.65 -0.14 -2.24 16 12 C 0.05 1.10 2.16 -91.65 -0.20 0.90 16 13 C -0.51 -13.35 8.56 -34.44 -0.29 -13.64 16 14 H 0.06 1.50 7.74 -52.48 -0.41 1.09 16 15 C 0.06 1.63 5.31 -17.82 -0.09 1.54 16 16 N -0.89 -24.59 11.38 55.43 0.63 -23.95 16 17 Si 0.89 20.88 29.54 -169.99 -5.02 15.86 16 18 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 19 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 20 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 21 C -0.10 -2.32 5.12 -26.65 -0.14 -2.45 16 22 C 0.07 1.37 4.94 -3.83 -0.02 1.35 16 23 C -0.10 -1.49 6.84 -80.02 -0.55 -2.04 16 24 N 0.03 0.51 4.45 33.93 0.15 0.66 16 25 O -0.20 -3.25 18.50 -29.46 -0.54 -3.79 16 26 O -0.08 -1.40 16.75 -29.46 -0.49 -1.89 16 27 C 0.06 0.71 9.15 -39.27 -0.36 0.35 16 28 H 0.11 0.24 8.14 -51.93 -0.42 -0.18 16 29 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.19 1.18 7.61 -52.49 -0.40 0.78 16 32 H 0.06 0.94 7.78 -51.93 -0.40 0.53 16 33 H 0.06 0.94 8.10 -51.93 -0.42 0.52 16 34 H 0.06 1.30 8.14 -51.93 -0.42 0.87 16 35 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.02 0.61 8.14 -51.93 -0.42 0.18 16 37 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 38 H 0.10 2.53 6.18 -51.92 -0.32 2.21 16 39 H 0.06 1.38 8.14 -51.93 -0.42 0.95 16 40 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.06 1.01 8.08 -51.93 -0.42 0.59 16 42 H 0.18 1.93 7.33 -52.48 -0.38 1.55 16 LS Contribution 359.12 15.07 5.41 5.41 Total: -1.00 -29.78 359.12 -8.56 -38.34 By element: Atomic # 1 Polarization: 3.32 SS G_CDS: -5.27 Total: -1.95 kcal Atomic # 6 Polarization: -1.77 SS G_CDS: -2.13 Total: -3.90 kcal Atomic # 7 Polarization: -38.79 SS G_CDS: 0.21 Total: -38.58 kcal Atomic # 8 Polarization: -13.43 SS G_CDS: -1.75 Total: -15.18 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -29.78 -8.56 -38.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000558718516.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.197 kcal (2) G-P(sol) polarization free energy of solvation -29.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds