Wall clock time and date at job start Tue Mar 31 2020 19:25:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34759 * 116.99969 * 2 1 4 4 O 1.21508 * 119.99898 * 359.97438 * 3 2 1 5 5 C 1.47399 * 119.99926 * 180.02562 * 3 2 1 6 6 C 1.39660 * 120.48382 * 359.97438 * 5 3 2 7 7 N 1.31636 * 120.51011 * 180.02562 * 6 5 3 8 8 C 1.32646 * 121.64200 * 0.02562 * 7 6 5 9 9 N 1.38430 * 119.53101 * 179.97438 * 8 7 6 10 10 C 1.46841 * 111.00110 * 323.62253 * 9 8 7 11 11 C 1.53039 * 109.52159 * 185.83766 * 10 9 8 12 12 C 1.53120 * 109.27672 * 300.81981 * 11 10 9 13 13 C 1.50702 * 109.52087 * 177.55967 * 12 11 10 14 14 H 1.08003 * 120.00319 * 0.02562 * 13 12 11 15 15 C 1.37874 * 119.99832 * 179.97438 * 13 12 11 16 16 N 1.31515 * 120.00450 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 120.00117 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.46818 * 359.97438 * 17 15 13 19 19 H 1.48489 * 109.47705 * 119.99748 * 17 15 13 20 20 H 1.48499 * 109.46836 * 240.00324 * 17 15 13 21 21 C 1.53118 * 109.16066 * 57.65535 * 12 11 10 22 22 C 1.46853 * 110.99638 * 87.83011 * 9 8 7 23 23 C 1.39376 * 120.93520 * 0.25692 * 8 7 6 24 24 N 1.48019 * 120.30594 * 179.71943 * 23 8 7 25 25 O 1.21800 * 119.99865 * 174.22473 * 24 23 8 26 26 O 1.21797 * 120.00191 * 354.22988 * 24 23 8 27 27 C 1.36874 * 119.38337 * 359.49059 * 23 8 7 28 28 H 1.08999 * 109.47009 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47844 * 300.00296 * 1 2 3 30 30 H 1.09005 * 109.46788 * 60.00503 * 1 2 3 31 31 H 1.07995 * 119.74417 * 0.04732 * 6 5 3 32 32 H 1.08999 * 109.46584 * 65.81905 * 10 9 8 33 33 H 1.09002 * 109.46362 * 305.85050 * 10 9 8 34 34 H 1.08999 * 109.50558 * 60.76000 * 11 10 9 35 35 H 1.09001 * 109.50321 * 180.87675 * 11 10 9 36 36 H 1.09000 * 109.52292 * 297.74877 * 12 11 10 37 37 H 0.96992 * 120.00392 * 179.97438 * 16 15 13 38 38 H 1.09008 * 109.50012 * 182.40433 * 21 12 11 39 39 H 1.09000 * 109.50424 * 62.29216 * 21 12 11 40 40 H 1.08998 * 109.46126 * 294.17815 * 22 9 8 41 41 H 1.09002 * 109.46208 * 54.14076 * 22 9 8 42 42 H 1.08005 * 120.75405 * 180.24838 * 27 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2007 0.0000 4 8 1.4020 2.2198 -0.0005 5 6 3.5357 1.2778 -0.0006 6 6 4.3062 0.1130 -0.0006 7 7 5.6208 0.1813 -0.0006 8 6 6.2572 1.3451 -0.0001 9 7 7.6413 1.3660 0.0004 10 6 8.1838 0.2701 0.8134 11 6 9.7048 0.4097 0.9103 12 6 10.3065 0.3722 -0.4972 13 6 11.7982 0.5692 -0.4126 14 1 12.2710 0.7071 0.5486 15 6 12.5594 0.5725 -1.5621 16 7 11.9839 0.4031 -2.7325 17 14 14.4085 0.8160 -1.4572 18 1 14.8059 0.9827 -0.0362 19 1 15.0971 -0.3691 -2.0285 20 1 14.7922 2.0287 -2.2236 21 6 9.6891 1.4933 -1.3377 22 6 8.1687 1.3223 -1.3694 23 6 5.5520 2.5473 0.0058 24 7 6.2763 3.8381 0.0126 25 8 5.6591 4.8833 -0.0884 26 8 7.4895 3.8552 0.1190 27 6 4.1835 2.5232 0.0006 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3635 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 3.8198 -0.8512 -0.0009 32 1 7.9355 -0.6842 0.3489 33 1 7.7510 0.3108 1.8130 34 1 9.9536 1.3576 1.3873 35 1 10.1088 -0.4126 1.5009 36 1 10.0910 -0.5909 -0.9599 37 1 12.5193 0.4058 -3.5412 38 1 10.0820 1.4452 -2.3534 39 1 9.9378 2.4583 -0.8961 40 1 7.9205 0.3631 -1.8237 41 1 7.7248 2.1272 -1.9553 42 1 3.6149 3.4414 0.0010 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000558718516.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:25:19 Heat of formation + Delta-G solvation = -43.503518 kcal Electronic energy + Delta-G solvation = -29238.500916 eV Core-core repulsion = 24994.327633 eV Total energy + Delta-G solvation = -4244.173283 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.136 amu Computer time = 1.57 seconds Orbital eigenvalues (eV) -43.46714 -42.22408 -41.33934 -39.62936 -37.72238 -37.55476 -36.03660 -34.60652 -33.83830 -32.08423 -31.62423 -28.89919 -28.20178 -27.43740 -25.56788 -24.82641 -23.84131 -23.51677 -22.48356 -20.62932 -20.48465 -19.82678 -18.87208 -18.82316 -18.60129 -18.35210 -17.98342 -17.57268 -17.50107 -16.54128 -16.33606 -15.69089 -15.31322 -15.09644 -14.89228 -14.79789 -14.52754 -14.32851 -14.24808 -14.03073 -13.25958 -13.15195 -12.96092 -12.80377 -12.69554 -12.46557 -12.34418 -12.17428 -12.13663 -12.07671 -11.97780 -11.92795 -11.88960 -11.48173 -11.37870 -10.99663 -10.83025 -10.72117 -10.37219 -9.75125 -8.05783 -6.16917 -1.50711 -1.04929 0.06970 0.19167 1.03221 1.37090 1.42868 1.46219 1.56326 1.96315 2.07613 2.47376 2.79086 2.96449 3.17360 3.22679 3.30892 3.34766 3.85514 4.02573 4.09013 4.24500 4.30303 4.31926 4.36733 4.37407 4.57718 4.64990 4.65546 4.76394 4.88282 5.00377 5.09740 5.10354 5.22106 5.22797 5.51077 5.60166 5.69789 5.83215 6.06832 6.08225 6.14490 6.40770 6.43124 6.50941 6.93510 7.50771 8.99508 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.021518 B = 0.002852 C = 0.002651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.936641 B = 9815.293641 C =10561.082749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.346 6.346 3 C 0.531 3.469 4 O -0.521 6.521 5 C -0.194 4.194 6 C 0.243 3.757 7 N -0.515 5.515 8 C 0.406 3.594 9 N -0.482 5.482 10 C 0.073 3.927 11 C -0.099 4.099 12 C 0.046 3.954 13 C -0.526 4.526 14 H 0.052 0.948 15 C 0.014 3.986 16 N -0.917 5.917 17 Si 0.949 3.051 18 H -0.268 1.268 19 H -0.282 1.282 20 H -0.284 1.284 21 C -0.092 4.092 22 C 0.091 3.909 23 C -0.111 4.111 24 N 0.034 4.966 25 O -0.182 6.182 26 O -0.132 6.132 27 C 0.066 3.934 28 H 0.139 0.861 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.230 0.770 32 H 0.057 0.943 33 H 0.082 0.918 34 H 0.053 0.947 35 H 0.067 0.933 36 H -0.001 1.001 37 H 0.260 0.740 38 H 0.071 0.929 39 H 0.040 0.960 40 H 0.044 0.956 41 H 0.059 0.941 42 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.142 -3.461 5.501 25.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.261 6.261 3 C 0.375 3.625 4 O -0.411 6.411 5 C -0.199 4.199 6 C 0.083 3.917 7 N -0.229 5.229 8 C 0.174 3.826 9 N -0.203 5.203 10 C -0.053 4.053 11 C -0.137 4.137 12 C 0.027 3.973 13 C -0.564 4.564 14 H 0.071 0.929 15 C -0.184 4.184 16 N -0.557 5.557 17 Si 0.776 3.224 18 H -0.193 1.193 19 H -0.208 1.208 20 H -0.210 1.210 21 C -0.130 4.130 22 C -0.033 4.033 23 C -0.200 4.200 24 N 0.553 4.447 25 O -0.391 6.391 26 O -0.353 6.353 27 C 0.040 3.960 28 H 0.157 0.843 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.246 0.754 32 H 0.076 0.924 33 H 0.101 0.899 34 H 0.072 0.928 35 H 0.085 0.915 36 H 0.017 0.983 37 H 0.069 0.931 38 H 0.089 0.911 39 H 0.059 0.941 40 H 0.062 0.938 41 H 0.077 0.923 42 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -23.990 -4.097 5.510 24.953 hybrid contribution 0.581 0.919 -0.552 1.220 sum -23.409 -3.178 4.958 24.138 Atomic orbital electron populations 1.23706 0.73198 1.06389 1.03032 1.86512 1.25909 1.30204 1.83517 1.20251 0.87428 0.82299 0.72500 1.90905 1.66777 1.36901 1.46553 1.19932 0.92144 0.93617 1.14204 1.24230 0.87172 1.00146 0.80182 1.68655 1.12000 1.24835 1.17416 1.20220 0.91993 0.86866 0.83525 1.59760 0.99373 1.46651 1.14495 1.22136 0.95903 0.90884 0.96335 1.21574 0.92269 1.01199 0.98633 1.18664 0.93734 0.93352 0.91519 1.21560 0.93492 1.48657 0.92713 0.92940 1.25672 1.02370 0.95071 0.95320 1.69979 1.36480 1.51253 0.97994 0.85634 0.81140 0.77459 0.78183 1.19273 1.20762 1.20979 1.21451 0.89732 0.99296 1.02558 1.22057 0.97903 0.99454 0.83899 1.21469 0.93106 0.84042 1.21349 1.43397 1.01476 1.02028 0.97836 1.94492 1.69172 1.21124 1.54343 1.94741 0.94991 1.94028 1.51582 1.21308 0.90344 1.01103 0.83234 0.84322 0.91439 0.91538 0.75380 0.92427 0.89944 0.92780 0.91474 0.98273 0.93131 0.91112 0.94093 0.93820 0.92273 0.79849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 10.57 113.37 1.20 1.39 16 2 O -0.35 -3.90 9.83 -56.69 -0.56 -4.46 16 3 C 0.53 8.64 7.89 70.23 0.55 9.19 16 4 O -0.52 -11.32 16.20 19.81 0.32 -11.00 16 5 C -0.19 -3.29 5.89 -20.00 -0.12 -3.40 16 6 C 0.24 3.74 10.79 85.07 0.92 4.66 16 7 N -0.52 -12.03 9.21 -192.28 -1.77 -13.80 16 8 C 0.41 11.64 5.54 133.24 0.74 12.38 16 9 N -0.48 -16.57 2.68 -702.12 -1.88 -18.45 16 10 C 0.07 2.43 4.91 86.33 0.42 2.85 16 11 C -0.10 -3.93 5.32 30.65 0.16 -3.76 16 12 C 0.05 2.22 2.16 -11.46 -0.02 2.20 16 13 C -0.53 -28.51 8.56 25.60 0.22 -28.29 16 14 H 0.05 2.82 7.74 -2.91 -0.02 2.79 16 15 C 0.01 0.77 5.31 84.65 0.45 1.22 16 16 N -0.92 -52.07 11.38 21.45 0.24 -51.83 16 17 Si 0.95 43.60 29.54 68.60 2.03 45.63 16 18 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 19 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 20 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 21 C -0.09 -4.31 5.12 30.64 0.16 -4.15 16 22 C 0.09 3.48 4.94 86.32 0.43 3.90 16 23 C -0.11 -3.06 6.84 36.33 0.25 -2.81 16 24 N 0.03 1.14 4.45 -46.57 -0.21 0.94 16 25 O -0.18 -5.96 18.50 18.89 0.35 -5.61 16 26 O -0.13 -5.09 16.75 18.89 0.32 -4.77 16 27 C 0.07 1.41 9.15 22.47 0.21 1.61 16 28 H 0.14 0.02 8.14 -2.39 -0.02 0.00 16 29 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 30 H 0.07 0.47 8.14 -2.38 -0.02 0.45 16 31 H 0.23 1.62 7.61 -2.91 -0.02 1.60 16 32 H 0.06 1.88 7.78 -2.39 -0.02 1.86 16 33 H 0.08 2.39 8.10 -2.39 -0.02 2.37 16 34 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 35 H 0.07 2.51 8.14 -2.39 -0.02 2.50 16 36 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 16 37 H 0.26 14.08 8.31 -92.71 -0.77 13.30 16 38 H 0.07 3.73 6.18 -2.38 -0.01 3.72 16 39 H 0.04 2.01 8.14 -2.39 -0.02 2.00 16 40 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 41 H 0.06 2.20 8.08 -2.39 -0.02 2.18 16 42 H 0.18 3.64 7.33 -2.91 -0.02 3.62 16 Total: -1.00 -66.68 359.12 5.46 -61.23 By element: Atomic # 1 Polarization: 4.09 SS G_CDS: 1.06 Total: 5.14 kcal Atomic # 6 Polarization: -8.58 SS G_CDS: 5.56 Total: -3.02 kcal Atomic # 7 Polarization: -79.52 SS G_CDS: -3.62 Total: -83.13 kcal Atomic # 8 Polarization: -26.27 SS G_CDS: 0.43 Total: -25.84 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Total: -66.68 5.46 -61.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000558718516.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.722 kcal (2) G-P(sol) polarization free energy of solvation -66.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.57 seconds