Wall clock time and date at job start Tue Mar 31 2020 18:42:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46901 * 110.99817 * 2 1 4 4 C 1.50702 * 109.47248 * 66.04493 * 3 2 1 5 5 H 1.08003 * 119.99734 * 0.02562 * 4 3 2 6 6 C 1.37875 * 119.99829 * 179.97438 * 4 3 2 7 7 N 1.31509 * 120.00515 * 359.97438 * 6 4 3 8 8 Si 1.86799 * 119.99588 * 180.02562 * 6 4 3 9 9 H 1.48504 * 109.47494 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.47164 * 119.99935 * 8 6 4 11 11 H 1.48505 * 109.47347 * 239.99976 * 8 6 4 12 12 C 1.46900 * 111.00002 * 236.04905 * 2 1 3 13 13 C 1.53000 * 109.47231 * 199.76306 * 12 2 1 14 14 H 1.09000 * 109.47242 * 302.12178 * 13 12 2 15 15 O 1.42899 * 109.46893 * 62.12051 * 13 12 2 16 16 C 1.52999 * 109.47484 * 182.12075 * 13 12 2 17 17 O 1.42893 * 109.47265 * 175.00313 * 16 13 12 18 18 C 1.35702 * 117.00135 * 180.02562 * 17 16 13 19 19 C 1.40204 * 120.15212 * 89.99812 * 18 17 16 20 20 C 1.43199 * 120.18958 * 359.95425 * 19 18 17 21 21 N 6.45881 * 142.49192 * 276.16994 * 2 1 3 22 22 C 1.39676 * 119.62015 * 179.97438 * 19 18 17 23 23 C 1.37864 * 119.89773 * 359.97438 * 22 19 18 24 24 C 1.38471 * 120.29914 * 0.02562 * 23 22 19 25 25 C 1.38153 * 120.39029 * 359.73867 * 24 23 22 26 26 N 1.48011 * 119.95643 * 180.26158 * 25 24 23 27 27 O 1.21805 * 119.99812 * 0.24985 * 26 25 24 28 28 O 1.21796 * 119.99990 * 180.25493 * 26 25 24 29 29 H 1.09000 * 109.47343 * 54.96728 * 1 2 3 30 30 H 1.08996 * 109.46996 * 174.96230 * 1 2 3 31 31 H 1.08999 * 109.46841 * 294.96248 * 1 2 3 32 32 H 1.08996 * 109.47434 * 186.04828 * 3 2 1 33 33 H 1.09001 * 109.47039 * 306.04402 * 3 2 1 34 34 H 0.97003 * 120.00704 * 179.97438 * 7 6 4 35 35 H 1.08994 * 109.47173 * 319.76356 * 12 2 1 36 36 H 1.08997 * 109.47385 * 79.76558 * 12 2 1 37 37 H 0.96702 * 114.00263 * 60.00246 * 15 13 12 38 38 H 1.09000 * 109.46724 * 295.00161 * 16 13 12 39 39 H 1.09002 * 109.47034 * 54.99729 * 16 13 12 40 40 H 1.08002 * 120.04992 * 179.97438 * 22 19 18 41 41 H 1.08001 * 119.84776 * 179.97438 * 23 22 19 42 42 H 1.07998 * 119.80364 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0472 1.2984 5 1 1.0746 1.5112 2.0488 6 6 2.0276 3.3492 1.5288 7 7 2.7136 4.0013 0.6158 8 14 1.5837 4.1865 3.1386 9 1 0.8165 3.2438 3.9918 10 1 2.8257 4.5930 3.8440 11 1 0.7567 5.3881 2.8601 12 6 1.9955 -0.7659 -1.1376 13 6 3.4456 -1.1647 -0.8566 14 1 4.0401 -0.2693 -0.6756 15 8 3.4927 -2.0088 0.2954 16 6 4.0108 -1.9167 -2.0633 17 8 5.3974 -2.1872 -1.8492 18 6 6.0543 -2.8527 -2.8326 19 6 6.6817 -2.1426 -3.8659 20 6 6.6320 -0.7117 -3.8898 21 7 6.5926 0.4227 -3.9098 22 6 7.3552 -2.8389 -4.8722 23 6 7.3994 -4.2165 -4.8433 24 6 6.7784 -4.9140 -3.8209 25 6 6.1130 -4.2375 -2.8169 26 7 5.4575 -4.9925 -1.7256 27 8 5.5088 -6.2094 -1.7107 28 8 4.8667 -4.3971 -0.8425 29 1 -0.3634 0.5899 -0.8415 30 1 -0.3633 -1.0237 -0.0902 31 1 -0.3633 0.4337 0.9317 32 1 3.0797 1.3445 -0.1083 33 1 1.5611 1.9273 -0.8309 34 1 2.9882 4.9174 0.7777 35 1 1.3933 -1.6630 -1.2815 36 1 1.9552 -0.1531 -2.0381 37 1 2.9843 -2.8265 0.2051 38 1 3.4728 -2.8561 -2.1904 39 1 3.8935 -1.3068 -2.9590 40 1 7.8406 -2.2988 -5.6717 41 1 7.9200 -4.7541 -5.6220 42 1 6.8183 -5.9932 -3.8059 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000569790718.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:42:40 Heat of formation + Delta-G solvation = -12.976300 kcal Electronic energy + Delta-G solvation = -28822.502627 eV Core-core repulsion = 24579.653104 eV Total energy + Delta-G solvation = -4242.849523 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.136 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.47430 -40.69635 -38.68023 -37.34625 -36.86786 -36.56875 -35.30635 -32.73636 -32.45985 -31.63655 -30.12477 -27.37241 -26.94906 -26.37838 -24.68746 -23.71266 -22.85616 -21.82714 -20.59627 -20.09795 -18.93884 -18.28626 -17.98146 -17.74314 -17.02582 -16.69212 -16.34404 -15.86356 -15.61548 -15.01704 -14.68182 -14.48914 -14.12842 -13.85250 -13.79959 -13.58857 -13.44883 -13.19012 -12.96130 -12.83580 -12.58824 -12.38336 -11.93087 -11.69890 -11.44626 -11.33849 -11.22441 -11.14612 -10.92997 -10.71774 -10.60171 -10.49398 -10.37784 -10.25268 -9.76236 -9.74443 -9.58771 -9.11154 -8.38837 -7.22380 -5.97864 -3.98508 -0.65691 -0.19617 0.88464 1.03886 2.14072 2.26459 2.72211 3.04630 3.17050 3.35550 3.42847 3.48342 3.85645 3.95656 4.11594 4.16512 4.45831 4.48215 4.65269 4.70568 4.93206 4.97499 5.09031 5.14918 5.19899 5.37444 5.37979 5.46516 5.47762 5.60973 5.94966 6.07074 6.09452 6.33466 6.38646 6.71437 6.76346 7.05542 7.27634 7.31217 7.45139 7.83343 8.09663 8.17769 8.26469 8.56757 9.08895 9.65452 11.13294 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.015169 B = 0.002949 C = 0.002644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1845.456186 B = 9491.782654 C =10585.614852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 N -0.528 5.528 3 C 0.192 3.808 4 C -0.503 4.503 5 H 0.065 0.935 6 C 0.054 3.946 7 N -0.900 5.900 8 Si 0.898 3.102 9 H -0.271 1.271 10 H -0.284 1.284 11 H -0.286 1.286 12 C 0.030 3.970 13 C 0.122 3.878 14 H 0.112 0.888 15 O -0.522 6.522 16 C 0.046 3.954 17 O -0.302 6.302 18 C 0.215 3.785 19 C -0.044 4.044 20 C 0.239 3.761 21 N -0.367 5.367 22 C -0.009 4.009 23 C -0.128 4.128 24 C -0.018 4.018 25 C -0.073 4.073 26 N 0.026 4.974 27 O -0.174 6.174 28 O -0.109 6.109 29 H 0.011 0.989 30 H 0.044 0.956 31 H 0.074 0.926 32 H 0.031 0.969 33 H -0.011 1.011 34 H 0.260 0.740 35 H 0.065 0.935 36 H 0.033 0.967 37 H 0.366 0.634 38 H 0.062 0.938 39 H 0.062 0.938 40 H 0.157 0.843 41 H 0.161 0.839 42 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.931 -20.951 -16.620 28.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 N -0.252 5.252 3 C 0.067 3.933 4 C -0.541 4.541 5 H 0.083 0.917 6 C -0.147 4.147 7 N -0.540 5.540 8 Si 0.726 3.274 9 H -0.196 1.196 10 H -0.210 1.210 11 H -0.212 1.212 12 C -0.100 4.100 13 C 0.062 3.938 14 H 0.130 0.870 15 O -0.325 6.325 16 C -0.028 4.028 17 O -0.218 6.218 18 C 0.166 3.834 19 C -0.049 4.049 20 C -0.078 4.078 21 N -0.041 5.041 22 C -0.030 4.030 23 C -0.146 4.146 24 C -0.038 4.038 25 C -0.157 4.157 26 N 0.547 4.453 27 O -0.383 6.383 28 O -0.335 6.335 29 H 0.030 0.970 30 H 0.062 0.938 31 H 0.093 0.907 32 H 0.049 0.951 33 H 0.007 0.993 34 H 0.070 0.930 35 H 0.083 0.917 36 H 0.051 0.949 37 H 0.212 0.788 38 H 0.081 0.919 39 H 0.080 0.920 40 H 0.175 0.825 41 H 0.178 0.822 42 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 9.868 -18.366 -16.387 26.518 hybrid contribution -0.914 -0.090 -0.137 0.929 sum 8.954 -18.456 -16.525 26.341 Atomic orbital electron populations 1.22200 0.88458 0.98722 1.01300 1.61981 1.06717 1.17875 1.38655 1.19816 0.95491 0.81300 0.96736 1.21174 1.34599 0.96768 1.01607 0.91716 1.24994 0.95321 0.97414 0.97000 1.69967 1.38493 1.11398 1.34105 0.86437 0.78149 0.79211 0.83610 1.19584 1.21005 1.21223 1.22574 0.94876 0.98496 0.94058 1.21851 0.95285 0.93494 0.83203 0.87023 1.86735 1.74297 1.34245 1.37185 1.23866 0.77413 1.00214 1.01356 1.86146 1.24277 1.74078 1.37284 1.18460 0.91117 0.87351 0.86503 1.16229 1.05602 0.86117 0.96903 1.24921 0.95629 0.91827 0.95376 1.81366 1.05814 1.11265 1.05695 1.21614 0.91678 0.94474 0.95229 1.21157 1.00924 0.93379 0.99167 1.21286 0.90181 1.02684 0.89642 1.21514 1.08631 0.91052 0.94467 1.43308 0.99609 1.01065 1.01270 1.94540 1.65832 0.95270 1.82623 1.94697 1.39671 1.70670 1.28438 0.96998 0.93760 0.90719 0.95135 0.99309 0.93035 0.91697 0.94916 0.78811 0.91932 0.91988 0.82494 0.82163 0.81818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.81 9.31 60.07 0.56 1.37 16 2 N -0.53 -11.53 4.59 -244.37 -1.12 -12.65 16 3 C 0.19 5.11 4.55 -4.97 -0.02 5.09 16 4 C -0.50 -14.57 8.58 -34.44 -0.30 -14.87 16 5 H 0.06 1.87 7.10 -52.48 -0.37 1.49 16 6 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 7 N -0.90 -27.57 13.29 55.43 0.74 -26.84 16 8 Si 0.90 22.38 29.54 -169.99 -5.02 17.36 16 9 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 10 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 11 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 12 C 0.03 0.51 4.65 -3.82 -0.02 0.49 16 13 C 0.12 2.08 3.32 -26.73 -0.09 1.99 16 14 H 0.11 2.30 6.73 -51.93 -0.35 1.95 16 15 O -0.52 -9.33 12.93 -40.85 -0.53 -9.86 16 16 C 0.05 0.60 5.03 37.16 0.19 0.79 16 17 O -0.30 -4.22 7.84 -44.82 -0.35 -4.57 16 18 C 0.22 2.26 5.71 -38.71 -0.22 2.04 16 19 C -0.04 -0.37 5.75 -106.70 -0.61 -0.98 16 20 C 0.24 2.77 14.87 -22.50 -0.33 2.43 16 21 N -0.37 -5.44 18.53 41.81 0.77 -4.66 16 22 C -0.01 -0.04 9.75 -39.18 -0.38 -0.42 16 23 C -0.13 -0.31 10.02 -39.63 -0.40 -0.71 16 24 C -0.02 -0.09 9.54 -39.53 -0.38 -0.47 16 25 C -0.07 -0.67 6.86 -79.85 -0.55 -1.22 16 26 N 0.03 0.31 4.45 34.01 0.15 0.46 16 27 O -0.17 -2.08 18.44 -29.46 -0.54 -2.63 16 28 O -0.11 -1.55 15.58 -36.59 -0.57 -2.12 16 29 H 0.01 0.22 8.08 -51.93 -0.42 -0.20 16 30 H 0.04 0.71 7.85 -51.93 -0.41 0.30 16 31 H 0.07 1.55 7.01 -51.93 -0.36 1.19 16 32 H 0.03 0.88 6.61 -51.93 -0.34 0.53 16 33 H -0.01 -0.31 8.07 -51.93 -0.42 -0.73 16 34 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 35 H 0.06 0.93 7.75 -51.93 -0.40 0.53 16 36 H 0.03 0.57 8.00 -51.93 -0.42 0.15 16 37 H 0.37 5.20 8.82 45.56 0.40 5.60 16 38 H 0.06 0.71 7.50 -51.93 -0.39 0.32 16 39 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.16 0.17 8.06 -52.49 -0.42 -0.26 16 41 H 0.16 -0.17 8.06 -52.49 -0.42 -0.60 16 42 H 0.16 0.52 7.59 -52.49 -0.40 0.12 16 LS Contribution 373.59 15.07 5.63 5.63 Total: -1.00 -36.62 373.59 -7.77 -44.39 By element: Atomic # 1 Polarization: 2.75 SS G_CDS: -4.28 Total: -1.54 kcal Atomic # 6 Polarization: -0.34 SS G_CDS: -2.65 Total: -2.99 kcal Atomic # 7 Polarization: -44.23 SS G_CDS: 0.54 Total: -43.69 kcal Atomic # 8 Polarization: -17.17 SS G_CDS: -1.99 Total: -19.17 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -36.62 -7.77 -44.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000569790718.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.415 kcal (2) G-P(sol) polarization free energy of solvation -36.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds