Wall clock time and date at job start Tue Mar 31 2020 18:42:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46901 * 110.99817 * 2 1 4 4 C 1.50702 * 109.47248 * 66.04493 * 3 2 1 5 5 H 1.08003 * 119.99734 * 0.02562 * 4 3 2 6 6 C 1.37875 * 119.99829 * 179.97438 * 4 3 2 7 7 N 1.31509 * 120.00515 * 359.97438 * 6 4 3 8 8 Si 1.86799 * 119.99588 * 180.02562 * 6 4 3 9 9 H 1.48504 * 109.47494 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.47164 * 119.99935 * 8 6 4 11 11 H 1.48505 * 109.47347 * 239.99976 * 8 6 4 12 12 C 1.46900 * 111.00002 * 236.04905 * 2 1 3 13 13 C 1.53000 * 109.47231 * 199.76306 * 12 2 1 14 14 H 1.09000 * 109.47242 * 302.12178 * 13 12 2 15 15 O 1.42899 * 109.46893 * 62.12051 * 13 12 2 16 16 C 1.52999 * 109.47484 * 182.12075 * 13 12 2 17 17 O 1.42893 * 109.47265 * 175.00313 * 16 13 12 18 18 C 1.35702 * 117.00135 * 180.02562 * 17 16 13 19 19 C 1.40204 * 120.15212 * 89.99812 * 18 17 16 20 20 C 1.43199 * 120.18958 * 359.95425 * 19 18 17 21 21 N 6.45881 * 142.49192 * 276.16994 * 2 1 3 22 22 C 1.39676 * 119.62015 * 179.97438 * 19 18 17 23 23 C 1.37864 * 119.89773 * 359.97438 * 22 19 18 24 24 C 1.38471 * 120.29914 * 0.02562 * 23 22 19 25 25 C 1.38153 * 120.39029 * 359.73867 * 24 23 22 26 26 N 1.48011 * 119.95643 * 180.26158 * 25 24 23 27 27 O 1.21805 * 119.99812 * 0.24985 * 26 25 24 28 28 O 1.21796 * 119.99990 * 180.25493 * 26 25 24 29 29 H 1.09000 * 109.47343 * 54.96728 * 1 2 3 30 30 H 1.08996 * 109.46996 * 174.96230 * 1 2 3 31 31 H 1.08999 * 109.46841 * 294.96248 * 1 2 3 32 32 H 1.08996 * 109.47434 * 186.04828 * 3 2 1 33 33 H 1.09001 * 109.47039 * 306.04402 * 3 2 1 34 34 H 0.97003 * 120.00704 * 179.97438 * 7 6 4 35 35 H 1.08994 * 109.47173 * 319.76356 * 12 2 1 36 36 H 1.08997 * 109.47385 * 79.76558 * 12 2 1 37 37 H 0.96702 * 114.00263 * 60.00246 * 15 13 12 38 38 H 1.09000 * 109.46724 * 295.00161 * 16 13 12 39 39 H 1.09002 * 109.47034 * 54.99729 * 16 13 12 40 40 H 1.08002 * 120.04992 * 179.97438 * 22 19 18 41 41 H 1.08001 * 119.84776 * 179.97438 * 23 22 19 42 42 H 1.07998 * 119.80364 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0472 1.2984 5 1 1.0746 1.5112 2.0488 6 6 2.0276 3.3492 1.5288 7 7 2.7136 4.0013 0.6158 8 14 1.5837 4.1865 3.1386 9 1 0.8165 3.2438 3.9918 10 1 2.8257 4.5930 3.8440 11 1 0.7567 5.3881 2.8601 12 6 1.9955 -0.7659 -1.1376 13 6 3.4456 -1.1647 -0.8566 14 1 4.0401 -0.2693 -0.6756 15 8 3.4927 -2.0088 0.2954 16 6 4.0108 -1.9167 -2.0633 17 8 5.3974 -2.1872 -1.8492 18 6 6.0543 -2.8527 -2.8326 19 6 6.6817 -2.1426 -3.8659 20 6 6.6320 -0.7117 -3.8898 21 7 6.5926 0.4227 -3.9098 22 6 7.3552 -2.8389 -4.8722 23 6 7.3994 -4.2165 -4.8433 24 6 6.7784 -4.9140 -3.8209 25 6 6.1130 -4.2375 -2.8169 26 7 5.4575 -4.9925 -1.7256 27 8 5.5088 -6.2094 -1.7107 28 8 4.8667 -4.3971 -0.8425 29 1 -0.3634 0.5899 -0.8415 30 1 -0.3633 -1.0237 -0.0902 31 1 -0.3633 0.4337 0.9317 32 1 3.0797 1.3445 -0.1083 33 1 1.5611 1.9273 -0.8309 34 1 2.9882 4.9174 0.7777 35 1 1.3933 -1.6630 -1.2815 36 1 1.9552 -0.1531 -2.0381 37 1 2.9843 -2.8265 0.2051 38 1 3.4728 -2.8561 -2.1904 39 1 3.8935 -1.3068 -2.9590 40 1 7.8406 -2.2988 -5.6717 41 1 7.9200 -4.7541 -5.6220 42 1 6.8183 -5.9932 -3.8059 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000569790718.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:42:40 Heat of formation + Delta-G solvation = -40.380335 kcal Electronic energy + Delta-G solvation = -28823.690955 eV Core-core repulsion = 24579.653104 eV Total energy + Delta-G solvation = -4244.037851 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.136 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.26991 -41.44811 -39.72249 -38.61146 -37.81501 -37.45796 -36.89200 -34.65256 -33.34742 -32.45334 -31.28686 -29.43405 -27.96602 -27.43046 -25.72995 -25.22794 -23.66056 -23.21180 -21.88223 -21.25764 -19.76589 -19.06833 -18.75369 -18.62176 -18.56861 -17.80507 -17.74631 -16.97624 -16.55415 -16.34663 -16.26485 -15.75687 -15.38505 -15.24652 -14.90284 -14.72012 -14.56605 -14.23743 -14.11358 -13.95993 -13.63244 -13.40616 -13.19203 -13.15580 -12.96505 -12.62123 -12.61085 -12.59262 -12.35333 -12.24937 -12.21655 -12.11321 -11.64511 -11.41817 -11.35706 -10.91126 -10.79661 -10.65621 -10.26715 -9.02336 -8.24301 -6.34291 -1.31289 -0.79371 0.16862 0.33375 1.36436 1.38573 1.38647 1.52286 1.54645 1.87950 2.35164 2.37566 2.44202 3.07563 3.12373 3.38105 3.40064 3.52834 3.65630 3.74570 3.79751 3.87856 4.00626 4.12825 4.16194 4.21368 4.50392 4.54003 4.56334 4.72462 4.79523 4.83868 4.93517 5.04333 5.12229 5.16031 5.25294 5.30878 5.61109 5.89582 6.01395 6.18741 6.28255 6.52837 6.57453 6.81851 7.03409 7.35448 8.87307 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.015169 B = 0.002949 C = 0.002644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1845.456186 B = 9491.782654 C =10585.614852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 N -0.541 5.541 3 C 0.209 3.791 4 C -0.521 4.521 5 H 0.064 0.936 6 C -0.003 4.003 7 N -0.937 5.937 8 Si 0.972 3.028 9 H -0.261 1.261 10 H -0.280 1.280 11 H -0.275 1.275 12 C 0.031 3.969 13 C 0.128 3.872 14 H 0.061 0.939 15 O -0.543 6.543 16 C 0.061 3.939 17 O -0.333 6.333 18 C 0.188 3.812 19 C -0.062 4.062 20 C 0.267 3.733 21 N -0.441 5.441 22 C 0.018 3.982 23 C -0.094 4.094 24 C -0.004 4.004 25 C -0.087 4.087 26 N 0.028 4.972 27 O -0.157 6.157 28 O -0.177 6.177 29 H 0.010 0.990 30 H 0.087 0.913 31 H 0.056 0.944 32 H -0.003 1.003 33 H -0.039 1.039 34 H 0.264 0.736 35 H 0.107 0.893 36 H 0.031 0.969 37 H 0.381 0.619 38 H 0.084 0.916 39 H 0.067 0.933 40 H 0.195 0.805 41 H 0.216 0.784 42 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.740 -24.118 -18.820 32.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 N -0.265 5.265 3 C 0.083 3.917 4 C -0.559 4.559 5 H 0.082 0.918 6 C -0.200 4.200 7 N -0.578 5.578 8 Si 0.796 3.204 9 H -0.185 1.185 10 H -0.206 1.206 11 H -0.200 1.200 12 C -0.097 4.097 13 C 0.067 3.933 14 H 0.079 0.921 15 O -0.348 6.348 16 C -0.013 4.013 17 O -0.250 6.250 18 C 0.139 3.861 19 C -0.067 4.067 20 C -0.048 4.048 21 N -0.116 5.116 22 C -0.002 4.002 23 C -0.112 4.112 24 C -0.023 4.023 25 C -0.172 4.172 26 N 0.544 4.456 27 O -0.374 6.374 28 O -0.387 6.387 29 H 0.028 0.972 30 H 0.105 0.895 31 H 0.075 0.925 32 H 0.015 0.985 33 H -0.022 1.022 34 H 0.072 0.928 35 H 0.125 0.875 36 H 0.049 0.951 37 H 0.230 0.770 38 H 0.102 0.898 39 H 0.085 0.915 40 H 0.212 0.788 41 H 0.233 0.767 42 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 10.617 -21.480 -18.532 30.290 hybrid contribution -1.008 0.646 0.350 1.247 sum 9.609 -20.833 -18.181 29.273 Atomic orbital electron populations 1.22232 0.86751 1.01216 1.00285 1.61854 1.08367 1.15024 1.41269 1.19398 0.93384 0.83895 0.95009 1.21505 1.34663 0.97399 1.02352 0.91827 1.25976 0.94996 0.98167 1.00886 1.70106 1.39501 1.11867 1.36351 0.85298 0.78057 0.78246 0.78816 1.18501 1.20622 1.20021 1.22666 0.95570 0.99235 0.92263 1.21558 0.94679 0.92346 0.84696 0.92128 1.86678 1.74991 1.35160 1.37987 1.23501 0.78236 1.00567 0.98990 1.86076 1.24316 1.75012 1.39560 1.18686 0.92332 0.88045 0.87050 1.16401 1.07678 0.84239 0.98338 1.25477 0.93529 0.92504 0.93281 1.81381 1.08547 1.13467 1.08188 1.22147 0.88968 0.95316 0.93787 1.21800 0.98359 0.92444 0.98558 1.21826 0.88174 1.04052 0.88240 1.21651 1.10327 0.90392 0.94801 1.43688 0.99196 1.01066 1.01639 1.94485 1.64679 0.95874 1.82372 1.94712 1.42664 1.70754 1.30610 0.97176 0.89472 0.92499 0.98508 1.02158 0.92767 0.87508 0.95068 0.77036 0.89788 0.91532 0.78784 0.76676 0.79246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.67 9.31 127.69 1.19 2.86 16 2 N -0.54 -24.49 4.59 -927.06 -4.25 -28.74 16 3 C 0.21 11.93 4.55 85.56 0.39 12.31 16 4 C -0.52 -31.46 8.58 25.60 0.22 -31.24 16 5 H 0.06 3.77 7.10 -2.91 -0.02 3.75 16 6 C 0.00 -0.17 5.46 84.66 0.46 0.29 16 7 N -0.94 -59.86 13.29 21.45 0.28 -59.57 16 8 Si 0.97 46.95 29.54 68.60 2.03 48.97 16 9 H -0.26 -12.08 7.11 99.48 0.71 -11.37 16 10 H -0.28 -13.32 7.11 99.48 0.71 -12.62 16 11 H -0.27 -12.71 7.11 99.48 0.71 -12.01 16 12 C 0.03 1.12 4.65 86.30 0.40 1.52 16 13 C 0.13 4.68 3.32 30.59 0.10 4.78 16 14 H 0.06 2.82 6.73 -2.39 -0.02 2.81 16 15 O -0.54 -20.60 12.93 -143.61 -1.86 -22.46 16 16 C 0.06 1.70 5.03 71.98 0.36 2.06 16 17 O -0.33 -9.90 7.84 -65.36 -0.51 -10.41 16 18 C 0.19 3.86 5.71 22.84 0.13 3.99 16 19 C -0.06 -0.93 5.75 -21.21 -0.12 -1.06 16 20 C 0.27 6.36 14.87 88.34 1.31 7.67 16 21 N -0.44 -13.95 18.53 18.99 0.35 -13.60 16 22 C 0.02 0.05 9.75 22.53 0.22 0.27 16 23 C -0.09 0.17 10.02 22.24 0.22 0.39 16 24 C 0.00 -0.02 9.54 22.31 0.21 0.19 16 25 C -0.09 -1.44 6.86 36.45 0.25 -1.19 16 26 N 0.03 0.66 4.45 -46.30 -0.21 0.45 16 27 O -0.16 -3.50 18.44 18.88 0.35 -3.15 16 28 O -0.18 -5.21 15.58 25.71 0.40 -4.81 16 29 H 0.01 0.38 8.08 -2.39 -0.02 0.36 16 30 H 0.09 2.62 7.85 -2.39 -0.02 2.60 16 31 H 0.06 2.38 7.01 -2.39 -0.02 2.37 16 32 H 0.00 -0.20 6.61 -2.39 -0.02 -0.21 16 33 H -0.04 -2.39 8.07 -2.39 -0.02 -2.41 16 34 H 0.26 15.77 8.31 -92.71 -0.77 15.00 16 35 H 0.11 2.90 7.75 -2.39 -0.02 2.88 16 36 H 0.03 1.13 8.00 -2.39 -0.02 1.11 16 37 H 0.38 11.30 8.82 -74.06 -0.65 10.65 16 38 H 0.08 1.93 7.50 -2.39 -0.02 1.91 16 39 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 40 H 0.20 -0.79 8.06 -2.91 -0.02 -0.81 16 41 H 0.22 -2.49 8.06 -2.91 -0.02 -2.51 16 42 H 0.19 0.09 7.59 -2.91 -0.02 0.07 16 Total: -1.00 -89.54 373.59 2.36 -87.18 By element: Atomic # 1 Polarization: 2.84 SS G_CDS: 0.43 Total: 3.26 kcal Atomic # 6 Polarization: -2.48 SS G_CDS: 5.35 Total: 2.87 kcal Atomic # 7 Polarization: -97.64 SS G_CDS: -3.82 Total: -101.46 kcal Atomic # 8 Polarization: -39.21 SS G_CDS: -1.62 Total: -40.83 kcal Atomic # 14 Polarization: 46.95 SS G_CDS: 2.03 Total: 48.97 kcal Total: -89.54 2.36 -87.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000569790718.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.801 kcal (2) G-P(sol) polarization free energy of solvation -89.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds