Wall clock time and date at job start Tue Mar 31 2020 18:42:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46902 * 110.99305 * 2 1 4 4 C 1.50702 * 109.47206 * 293.94981 * 3 2 1 5 5 H 1.07990 * 119.99891 * 0.02562 * 4 3 2 6 6 C 1.37878 * 119.99588 * 179.97438 * 4 3 2 7 7 N 1.31512 * 120.00136 * 0.02562 * 6 4 3 8 8 Si 1.86805 * 119.99737 * 180.02562 * 6 4 3 9 9 H 1.48502 * 109.47068 * 60.00158 * 8 6 4 10 10 H 1.48498 * 109.46985 * 180.02562 * 8 6 4 11 11 H 1.48499 * 109.46869 * 300.00247 * 8 6 4 12 12 C 1.46899 * 110.99991 * 123.95060 * 2 1 3 13 13 C 1.52998 * 109.46858 * 163.94840 * 12 2 1 14 14 H 1.09003 * 109.47469 * 55.04211 * 13 12 2 15 15 O 1.42900 * 109.47173 * 295.04684 * 13 12 2 16 16 C 1.53000 * 109.47107 * 175.04575 * 13 12 2 17 17 O 1.42903 * 109.47039 * 184.99933 * 16 13 12 18 18 C 1.35708 * 116.99906 * 180.02562 * 17 16 13 19 19 C 1.40202 * 120.14998 * 89.99609 * 18 17 16 20 20 C 1.43198 * 120.18993 * 359.96132 * 19 18 17 21 21 N 6.67722 * 124.42133 * 168.28380 * 2 1 3 22 22 C 1.39677 * 119.61803 * 179.97438 * 19 18 17 23 23 C 1.37869 * 119.89979 * 0.02562 * 22 19 18 24 24 C 1.38474 * 120.29361 * 0.02562 * 23 22 19 25 25 C 1.38146 * 120.39312 * 359.73732 * 24 23 22 26 26 N 1.48018 * 119.95651 * 180.26053 * 25 24 23 27 27 O 1.21799 * 119.99960 * 0.25509 * 26 25 24 28 28 O 1.21803 * 120.00113 * 180.26277 * 26 25 24 29 29 H 1.08998 * 109.47439 * 65.32228 * 1 2 3 30 30 H 1.08994 * 109.47470 * 305.31641 * 1 2 3 31 31 H 1.09004 * 109.46549 * 185.31844 * 1 2 3 32 32 H 1.08997 * 109.47475 * 53.95587 * 3 2 1 33 33 H 1.09000 * 109.46537 * 173.95045 * 3 2 1 34 34 H 0.97003 * 119.99947 * 179.97438 * 7 6 4 35 35 H 1.08997 * 109.47186 * 283.95255 * 12 2 1 36 36 H 1.08998 * 109.46913 * 43.95393 * 12 2 1 37 37 H 0.96698 * 114.00266 * 299.99986 * 15 13 12 38 38 H 1.08996 * 109.47256 * 305.00193 * 16 13 12 39 39 H 1.09001 * 109.46972 * 65.00325 * 16 13 12 40 40 H 1.07999 * 120.04970 * 179.97438 * 22 19 18 41 41 H 1.07999 * 119.85402 * 180.02562 * 23 22 19 42 42 H 1.08000 * 119.80564 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.6368 2.0472 -1.2985 5 1 1.0740 1.5115 -2.0485 6 6 2.0266 3.3496 -1.5284 7 7 2.7116 4.0020 -0.6148 8 14 1.5816 4.1874 -3.1377 9 1 0.1043 4.2236 -3.2849 10 1 2.1137 5.5737 -3.1376 11 1 2.1734 3.4304 -4.2699 12 6 1.9955 -0.7659 1.1376 13 6 3.4724 -1.0852 0.8977 14 1 4.0177 -0.1608 0.7072 15 8 3.5950 -1.9518 -0.2319 16 6 4.0527 -1.7741 2.1344 17 8 5.4574 -1.9674 1.9569 18 6 6.1292 -2.5709 2.9699 19 6 6.2651 -3.9662 2.9919 20 6 5.6954 -4.7618 1.9464 21 7 5.2435 -5.3933 1.1185 22 6 6.9592 -4.5757 4.0396 23 6 7.5046 -3.8039 5.0435 24 6 7.3671 -2.4263 5.0184 25 6 6.6872 -1.8104 3.9854 26 7 6.5510 -0.3367 3.9653 27 8 7.0421 0.3326 4.8566 28 8 5.9476 0.2068 3.0574 29 1 -0.3634 0.4290 -0.9338 30 1 -0.3634 0.5940 0.8385 31 1 -0.3632 -1.0233 0.0953 32 1 1.5610 1.9274 0.8309 33 1 3.0796 1.3445 0.1083 34 1 2.9861 4.9182 -0.7768 35 1 1.8943 -0.1776 2.0496 36 1 1.4350 -1.6951 1.2405 37 1 3.1332 -2.7955 -0.1323 38 1 3.8797 -1.1513 3.0120 39 1 3.5677 -2.7404 2.2732 40 1 7.0677 -5.6499 4.0638 41 1 8.0414 -4.2759 5.8530 42 1 7.7978 -1.8293 5.8086 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000569790719.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:42:43 Heat of formation + Delta-G solvation = -11.700644 kcal Electronic energy + Delta-G solvation = -28872.606813 eV Core-core repulsion = 24629.812607 eV Total energy + Delta-G solvation = -4242.794207 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.136 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.40393 -40.68206 -38.70187 -37.38219 -36.93506 -36.48886 -35.37787 -32.73162 -32.42609 -31.65951 -30.14205 -27.34028 -26.91807 -26.37346 -24.68990 -23.67272 -22.82871 -21.88581 -20.56127 -20.07737 -18.86200 -18.26338 -17.98216 -17.67263 -17.01778 -16.72115 -16.34709 -15.87370 -15.57374 -15.13576 -14.66737 -14.49240 -14.11923 -13.91466 -13.82021 -13.63207 -13.47865 -13.21114 -12.98607 -12.78932 -12.71104 -12.34760 -11.88486 -11.61945 -11.44524 -11.27683 -11.16271 -11.12660 -10.91556 -10.74793 -10.60666 -10.49020 -10.32626 -10.25175 -9.80187 -9.72622 -9.64417 -9.10669 -8.33177 -7.20893 -5.92377 -3.93434 -0.63737 -0.20797 0.92205 1.08739 2.12469 2.18424 2.70025 3.00166 3.13457 3.41060 3.44994 3.48420 3.85207 3.95816 4.11358 4.16202 4.45939 4.50649 4.61491 4.67982 4.90258 4.97588 5.05410 5.16103 5.19434 5.37339 5.41902 5.45112 5.48060 5.61439 5.95682 6.06834 6.16291 6.34622 6.43338 6.71723 6.76662 6.96866 7.32636 7.36741 7.50960 7.85625 8.03492 8.14625 8.24442 8.60523 9.12694 9.69897 11.18466 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.014304 B = 0.003091 C = 0.002724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1957.030174 B = 9056.352639 C =10278.142400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 N -0.530 5.530 3 C 0.191 3.809 4 C -0.507 4.507 5 H 0.062 0.938 6 C 0.056 3.944 7 N -0.896 5.896 8 Si 0.897 3.103 9 H -0.278 1.278 10 H -0.288 1.288 11 H -0.276 1.276 12 C 0.031 3.969 13 C 0.118 3.882 14 H 0.127 0.873 15 O -0.531 6.531 16 C 0.047 3.953 17 O -0.302 6.302 18 C 0.216 3.784 19 C -0.048 4.048 20 C 0.248 3.752 21 N -0.377 5.377 22 C -0.010 4.010 23 C -0.128 4.128 24 C -0.017 4.017 25 C -0.072 4.072 26 N 0.024 4.976 27 O -0.165 6.165 28 O -0.114 6.114 29 H 0.074 0.926 30 H 0.013 0.987 31 H 0.041 0.959 32 H -0.009 1.009 33 H 0.036 0.964 34 H 0.262 0.738 35 H 0.036 0.964 36 H 0.062 0.938 37 H 0.359 0.641 38 H 0.070 0.930 39 H 0.056 0.944 40 H 0.157 0.843 41 H 0.161 0.839 42 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.384 -19.724 17.328 27.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 N -0.255 5.255 3 C 0.066 3.934 4 C -0.545 4.545 5 H 0.080 0.920 6 C -0.146 4.146 7 N -0.536 5.536 8 Si 0.725 3.275 9 H -0.204 1.204 10 H -0.214 1.214 11 H -0.202 1.202 12 C -0.098 4.098 13 C 0.058 3.942 14 H 0.144 0.856 15 O -0.333 6.333 16 C -0.027 4.027 17 O -0.218 6.218 18 C 0.166 3.834 19 C -0.052 4.052 20 C -0.068 4.068 21 N -0.051 5.051 22 C -0.031 4.031 23 C -0.146 4.146 24 C -0.036 4.036 25 C -0.156 4.156 26 N 0.546 4.454 27 O -0.376 6.376 28 O -0.337 6.337 29 H 0.093 0.907 30 H 0.031 0.969 31 H 0.060 0.940 32 H 0.009 0.991 33 H 0.053 0.947 34 H 0.071 0.929 35 H 0.054 0.946 36 H 0.080 0.920 37 H 0.204 0.796 38 H 0.088 0.912 39 H 0.074 0.926 40 H 0.174 0.826 41 H 0.178 0.822 42 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 9.416 -20.876 15.275 27.529 hybrid contribution -0.634 1.150 0.725 1.500 sum 8.783 -19.726 16.000 26.875 Atomic orbital electron populations 1.22189 0.88543 0.98570 1.01385 1.62028 1.06680 1.18161 1.38587 1.19836 0.95802 0.81082 0.96695 1.21075 1.34959 0.96827 1.01680 0.92007 1.24976 0.95335 0.97369 0.96885 1.69949 1.38153 1.11472 1.33986 0.86577 0.78531 0.78342 0.84040 1.20416 1.21380 1.20161 1.22548 0.94351 0.98583 0.94364 1.22018 0.95118 0.94366 0.82692 0.85572 1.86770 1.76164 1.30320 1.40063 1.23833 0.76436 1.00219 1.02211 1.86151 1.22430 1.77543 1.35664 1.18459 0.90803 0.88772 0.85325 1.16208 1.04989 0.89428 0.94624 1.24877 0.94636 0.94015 0.93316 1.81275 1.07262 1.08528 1.08049 1.21593 0.89882 1.01778 0.89833 1.21159 1.01485 0.91824 1.00171 1.21313 0.91480 0.95785 0.95047 1.21565 1.11760 0.81656 1.00627 1.43334 0.99368 1.02393 1.00314 1.94538 1.49362 1.62868 1.30827 1.94740 1.38617 1.73159 1.27220 0.90747 0.96853 0.93973 0.99149 0.94650 0.92871 0.94611 0.91972 0.79553 0.91223 0.92606 0.82553 0.82152 0.81732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.81 9.32 60.07 0.56 1.37 16 2 N -0.53 -11.62 4.66 -244.37 -1.14 -12.76 16 3 C 0.19 5.08 4.57 -4.97 -0.02 5.06 16 4 C -0.51 -14.70 8.58 -34.44 -0.30 -15.00 16 5 H 0.06 1.78 7.10 -52.49 -0.37 1.41 16 6 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 7 N -0.90 -27.39 13.29 55.43 0.74 -26.65 16 8 Si 0.90 22.38 29.54 -169.99 -5.02 17.36 16 9 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 10 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 11 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 12 C 0.03 0.54 4.61 -3.83 -0.02 0.52 16 13 C 0.12 2.03 3.30 -26.73 -0.09 1.94 16 14 H 0.13 2.65 6.46 -51.93 -0.34 2.31 16 15 O -0.53 -9.57 13.25 -40.08 -0.53 -10.10 16 16 C 0.05 0.63 5.02 37.16 0.19 0.81 16 17 O -0.30 -4.27 7.84 -44.84 -0.35 -4.62 16 18 C 0.22 2.29 5.71 -38.71 -0.22 2.07 16 19 C -0.05 -0.37 5.75 -106.70 -0.61 -0.99 16 20 C 0.25 2.50 14.87 -22.50 -0.33 2.16 16 21 N -0.38 -4.66 18.53 41.80 0.77 -3.89 16 22 C -0.01 -0.04 9.76 -39.18 -0.38 -0.42 16 23 C -0.13 -0.32 10.02 -39.63 -0.40 -0.71 16 24 C -0.02 -0.09 9.54 -39.53 -0.38 -0.47 16 25 C -0.07 -0.72 6.86 -79.84 -0.55 -1.27 16 26 N 0.02 0.33 4.45 34.01 0.15 0.48 16 27 O -0.16 -2.27 18.44 -29.46 -0.54 -2.81 16 28 O -0.11 -1.93 16.06 -36.50 -0.59 -2.52 16 29 H 0.07 1.55 7.02 -51.93 -0.36 1.19 16 30 H 0.01 0.25 8.07 -51.93 -0.42 -0.17 16 31 H 0.04 0.68 7.88 -51.93 -0.41 0.27 16 32 H -0.01 -0.26 8.07 -51.93 -0.42 -0.68 16 33 H 0.04 1.01 6.34 -51.93 -0.33 0.68 16 34 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 35 H 0.04 0.62 8.05 -51.93 -0.42 0.20 16 36 H 0.06 0.90 7.82 -51.93 -0.41 0.49 16 37 H 0.36 5.07 9.05 45.56 0.41 5.49 16 38 H 0.07 0.90 7.50 -51.93 -0.39 0.51 16 39 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 40 H 0.16 0.08 8.06 -52.49 -0.42 -0.34 16 41 H 0.16 -0.17 8.06 -52.49 -0.42 -0.59 16 42 H 0.17 0.62 7.59 -52.49 -0.40 0.22 16 LS Contribution 374.26 15.07 5.64 5.64 Total: -1.00 -36.57 374.26 -7.77 -44.34 By element: Atomic # 1 Polarization: 3.15 SS G_CDS: -4.25 Total: -1.10 kcal Atomic # 6 Polarization: -0.72 SS G_CDS: -2.65 Total: -3.37 kcal Atomic # 7 Polarization: -43.35 SS G_CDS: 0.52 Total: -42.82 kcal Atomic # 8 Polarization: -18.04 SS G_CDS: -2.01 Total: -20.05 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -36.57 -7.77 -44.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000569790719.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.638 kcal (2) G-P(sol) polarization free energy of solvation -36.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds