Wall clock time and date at job start Tue Mar 31 2020 18:42:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46902 * 110.99305 * 2 1 4 4 C 1.50702 * 109.47206 * 293.94981 * 3 2 1 5 5 H 1.07990 * 119.99891 * 0.02562 * 4 3 2 6 6 C 1.37878 * 119.99588 * 179.97438 * 4 3 2 7 7 N 1.31512 * 120.00136 * 0.02562 * 6 4 3 8 8 Si 1.86805 * 119.99737 * 180.02562 * 6 4 3 9 9 H 1.48502 * 109.47068 * 60.00158 * 8 6 4 10 10 H 1.48498 * 109.46985 * 180.02562 * 8 6 4 11 11 H 1.48499 * 109.46869 * 300.00247 * 8 6 4 12 12 C 1.46899 * 110.99991 * 123.95060 * 2 1 3 13 13 C 1.52998 * 109.46858 * 163.94840 * 12 2 1 14 14 H 1.09003 * 109.47469 * 55.04211 * 13 12 2 15 15 O 1.42900 * 109.47173 * 295.04684 * 13 12 2 16 16 C 1.53000 * 109.47107 * 175.04575 * 13 12 2 17 17 O 1.42903 * 109.47039 * 184.99933 * 16 13 12 18 18 C 1.35708 * 116.99906 * 180.02562 * 17 16 13 19 19 C 1.40202 * 120.14998 * 89.99609 * 18 17 16 20 20 C 1.43198 * 120.18993 * 359.96132 * 19 18 17 21 21 N 6.67722 * 124.42133 * 168.28380 * 2 1 3 22 22 C 1.39677 * 119.61803 * 179.97438 * 19 18 17 23 23 C 1.37869 * 119.89979 * 0.02562 * 22 19 18 24 24 C 1.38474 * 120.29361 * 0.02562 * 23 22 19 25 25 C 1.38146 * 120.39312 * 359.73732 * 24 23 22 26 26 N 1.48018 * 119.95651 * 180.26053 * 25 24 23 27 27 O 1.21799 * 119.99960 * 0.25509 * 26 25 24 28 28 O 1.21803 * 120.00113 * 180.26277 * 26 25 24 29 29 H 1.08998 * 109.47439 * 65.32228 * 1 2 3 30 30 H 1.08994 * 109.47470 * 305.31641 * 1 2 3 31 31 H 1.09004 * 109.46549 * 185.31844 * 1 2 3 32 32 H 1.08997 * 109.47475 * 53.95587 * 3 2 1 33 33 H 1.09000 * 109.46537 * 173.95045 * 3 2 1 34 34 H 0.97003 * 119.99947 * 179.97438 * 7 6 4 35 35 H 1.08997 * 109.47186 * 283.95255 * 12 2 1 36 36 H 1.08998 * 109.46913 * 43.95393 * 12 2 1 37 37 H 0.96698 * 114.00266 * 299.99986 * 15 13 12 38 38 H 1.08996 * 109.47256 * 305.00193 * 16 13 12 39 39 H 1.09001 * 109.46972 * 65.00325 * 16 13 12 40 40 H 1.07999 * 120.04970 * 179.97438 * 22 19 18 41 41 H 1.07999 * 119.85402 * 180.02562 * 23 22 19 42 42 H 1.08000 * 119.80564 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.6368 2.0472 -1.2985 5 1 1.0740 1.5115 -2.0485 6 6 2.0266 3.3496 -1.5284 7 7 2.7116 4.0020 -0.6148 8 14 1.5816 4.1874 -3.1377 9 1 0.1043 4.2236 -3.2849 10 1 2.1137 5.5737 -3.1376 11 1 2.1734 3.4304 -4.2699 12 6 1.9955 -0.7659 1.1376 13 6 3.4724 -1.0852 0.8977 14 1 4.0177 -0.1608 0.7072 15 8 3.5950 -1.9518 -0.2319 16 6 4.0527 -1.7741 2.1344 17 8 5.4574 -1.9674 1.9569 18 6 6.1292 -2.5709 2.9699 19 6 6.2651 -3.9662 2.9919 20 6 5.6954 -4.7618 1.9464 21 7 5.2435 -5.3933 1.1185 22 6 6.9592 -4.5757 4.0396 23 6 7.5046 -3.8039 5.0435 24 6 7.3671 -2.4263 5.0184 25 6 6.6872 -1.8104 3.9854 26 7 6.5510 -0.3367 3.9653 27 8 7.0421 0.3326 4.8566 28 8 5.9476 0.2068 3.0574 29 1 -0.3634 0.4290 -0.9338 30 1 -0.3634 0.5940 0.8385 31 1 -0.3632 -1.0233 0.0953 32 1 1.5610 1.9274 0.8309 33 1 3.0796 1.3445 0.1083 34 1 2.9861 4.9182 -0.7768 35 1 1.8943 -0.1776 2.0496 36 1 1.4350 -1.6951 1.2405 37 1 3.1332 -2.7955 -0.1323 38 1 3.8797 -1.1513 3.0120 39 1 3.5677 -2.7404 2.2732 40 1 7.0677 -5.6499 4.0638 41 1 8.0414 -4.2759 5.8530 42 1 7.7978 -1.8293 5.8086 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000569790719.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:42:42 Heat of formation + Delta-G solvation = -39.486034 kcal Electronic energy + Delta-G solvation = -28873.811678 eV Core-core repulsion = 24629.812607 eV Total energy + Delta-G solvation = -4243.999072 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.136 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.32205 -41.46848 -39.76856 -38.62984 -37.73246 -37.54375 -36.98198 -34.62648 -33.35627 -32.49595 -31.30067 -29.41300 -27.99439 -27.47507 -25.70435 -25.22100 -23.64300 -23.31109 -21.86688 -21.28352 -19.78945 -19.05397 -18.81110 -18.63992 -18.56317 -17.91264 -17.73324 -16.94827 -16.55031 -16.42579 -16.28819 -15.74109 -15.33303 -15.28919 -14.87146 -14.65403 -14.61161 -14.20048 -14.07769 -13.92437 -13.61802 -13.46302 -13.17622 -13.10084 -12.96778 -12.71535 -12.67308 -12.55738 -12.39769 -12.31149 -12.26174 -12.20472 -11.61973 -11.42460 -11.37259 -11.03976 -10.79968 -10.60069 -10.26682 -9.02264 -8.19264 -6.29854 -1.39035 -0.78879 0.10141 0.29278 1.38558 1.42694 1.43549 1.51098 1.55986 1.88785 2.36189 2.40341 2.47427 3.10027 3.14141 3.33463 3.39367 3.46856 3.63876 3.71230 3.79087 3.84576 4.00487 4.10563 4.17358 4.22016 4.49855 4.52915 4.55398 4.73047 4.78921 4.83091 4.95150 5.05614 5.11842 5.16631 5.27335 5.29843 5.63545 5.88931 6.05096 6.22778 6.29945 6.39219 6.58272 6.82720 6.85834 7.39185 8.91830 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.014304 B = 0.003091 C = 0.002724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1957.030174 B = 9056.352639 C =10278.142400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 N -0.544 5.544 3 C 0.209 3.791 4 C -0.526 4.526 5 H 0.062 0.938 6 C -0.001 4.001 7 N -0.933 5.933 8 Si 0.970 3.030 9 H -0.263 1.263 10 H -0.281 1.281 11 H -0.272 1.272 12 C 0.033 3.967 13 C 0.124 3.876 14 H 0.072 0.928 15 O -0.553 6.553 16 C 0.063 3.937 17 O -0.334 6.334 18 C 0.187 3.813 19 C -0.056 4.056 20 C 0.268 3.732 21 N -0.425 5.425 22 C 0.021 3.979 23 C -0.093 4.093 24 C -0.006 4.006 25 C -0.092 4.092 26 N 0.029 4.971 27 O -0.139 6.139 28 O -0.216 6.216 29 H 0.056 0.944 30 H 0.011 0.989 31 H 0.085 0.915 32 H -0.038 1.038 33 H 0.002 0.998 34 H 0.264 0.736 35 H 0.034 0.966 36 H 0.105 0.895 37 H 0.377 0.623 38 H 0.065 0.935 39 H 0.086 0.914 40 H 0.201 0.799 41 H 0.217 0.783 42 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.275 -23.248 19.603 32.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 N -0.268 5.268 3 C 0.083 3.917 4 C -0.564 4.564 5 H 0.080 0.920 6 C -0.199 4.199 7 N -0.574 5.574 8 Si 0.795 3.205 9 H -0.188 1.188 10 H -0.206 1.206 11 H -0.197 1.197 12 C -0.096 4.096 13 C 0.064 3.936 14 H 0.090 0.910 15 O -0.358 6.358 16 C -0.011 4.011 17 O -0.250 6.250 18 C 0.138 3.862 19 C -0.061 4.061 20 C -0.048 4.048 21 N -0.100 5.100 22 C 0.001 3.999 23 C -0.111 4.111 24 C -0.025 4.025 25 C -0.177 4.177 26 N 0.543 4.457 27 O -0.364 6.364 28 O -0.417 6.417 29 H 0.075 0.925 30 H 0.029 0.971 31 H 0.103 0.897 32 H -0.021 1.021 33 H 0.020 0.980 34 H 0.073 0.927 35 H 0.053 0.947 36 H 0.123 0.877 37 H 0.225 0.775 38 H 0.084 0.916 39 H 0.104 0.896 40 H 0.218 0.782 41 H 0.234 0.766 42 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 10.198 -24.405 17.411 31.666 hybrid contribution -0.699 2.046 0.296 2.183 sum 9.498 -22.358 17.707 30.061 Atomic orbital electron populations 1.22217 0.86839 1.01068 1.00366 1.61899 1.08329 1.15335 1.41192 1.19407 0.93722 0.83660 0.94948 1.21427 1.35064 0.97494 1.02447 0.92015 1.25961 0.94999 0.98119 1.00804 1.70101 1.39147 1.11874 1.36252 0.85427 0.78961 0.77149 0.79011 1.18810 1.20645 1.19672 1.22638 0.94857 0.99497 0.92570 1.21683 0.94710 0.92925 0.84274 0.91011 1.86712 1.76826 1.31417 1.40837 1.23461 0.77221 1.00942 0.99453 1.86078 1.22523 1.78622 1.37780 1.18746 0.91922 0.89985 0.85533 1.16329 1.06465 0.87698 0.95594 1.25210 0.93519 0.93138 0.92896 1.81290 1.09000 1.10364 1.09360 1.22203 0.86353 1.03958 0.87370 1.21819 0.99082 0.89867 1.00337 1.21837 0.89658 0.97485 0.93543 1.21763 1.14612 0.78447 1.02840 1.43886 0.98155 1.04351 0.99325 1.94455 1.47394 1.64606 1.29932 1.94776 1.42789 1.74944 1.29223 0.92499 0.97077 0.89665 1.02064 0.98020 0.92686 0.94749 0.87663 0.77537 0.91633 0.89615 0.78194 0.76579 0.79562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.69 9.32 127.69 1.19 2.88 16 2 N -0.54 -24.83 4.66 -927.06 -4.32 -29.14 16 3 C 0.21 11.99 4.57 85.56 0.39 12.38 16 4 C -0.53 -31.97 8.58 25.60 0.22 -31.75 16 5 H 0.06 3.67 7.10 -2.92 -0.02 3.65 16 6 C 0.00 -0.05 5.46 84.66 0.46 0.41 16 7 N -0.93 -59.90 13.29 21.45 0.28 -59.61 16 8 Si 0.97 47.11 29.54 68.60 2.03 49.13 16 9 H -0.26 -12.08 7.11 99.48 0.71 -11.38 16 10 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 11 H -0.27 -12.91 7.11 99.48 0.71 -12.20 16 12 C 0.03 1.19 4.61 86.30 0.40 1.59 16 13 C 0.12 4.64 3.30 30.59 0.10 4.74 16 14 H 0.07 3.47 6.46 -2.39 -0.02 3.46 16 15 O -0.55 -21.00 13.25 -144.34 -1.91 -22.92 16 16 C 0.06 1.81 5.02 71.98 0.36 2.17 16 17 O -0.33 -10.18 7.84 -65.42 -0.51 -10.69 16 18 C 0.19 3.93 5.71 22.84 0.13 4.06 16 19 C -0.06 -0.73 5.75 -21.21 -0.12 -0.85 16 20 C 0.27 5.01 14.87 88.34 1.31 6.32 16 21 N -0.43 -10.22 18.53 18.99 0.35 -9.87 16 22 C 0.02 0.02 9.76 22.53 0.22 0.24 16 23 C -0.09 0.18 10.02 22.24 0.22 0.40 16 24 C -0.01 -0.04 9.54 22.30 0.21 0.17 16 25 C -0.09 -1.76 6.86 36.44 0.25 -1.51 16 26 N 0.03 0.85 4.45 -46.30 -0.21 0.65 16 27 O -0.14 -3.90 18.44 18.89 0.35 -3.56 16 28 O -0.22 -8.38 16.06 25.61 0.41 -7.96 16 29 H 0.06 2.40 7.02 -2.39 -0.02 2.38 16 30 H 0.01 0.42 8.07 -2.39 -0.02 0.40 16 31 H 0.08 2.59 7.88 -2.39 -0.02 2.57 16 32 H -0.04 -2.35 8.07 -2.39 -0.02 -2.37 16 33 H 0.00 0.11 6.34 -2.39 -0.02 0.10 16 34 H 0.26 15.95 8.31 -92.71 -0.77 15.18 16 35 H 0.03 1.26 8.05 -2.39 -0.02 1.24 16 36 H 0.11 2.87 7.82 -2.39 -0.02 2.85 16 37 H 0.38 10.78 9.05 -74.06 -0.67 10.11 16 38 H 0.07 1.88 7.50 -2.39 -0.02 1.86 16 39 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 40 H 0.20 -1.34 8.06 -2.91 -0.02 -1.37 16 41 H 0.22 -2.54 8.06 -2.91 -0.02 -2.56 16 42 H 0.19 0.50 7.59 -2.91 -0.02 0.48 16 Total: -1.00 -91.27 374.26 2.24 -89.03 By element: Atomic # 1 Polarization: 3.29 SS G_CDS: 0.41 Total: 3.70 kcal Atomic # 6 Polarization: -4.10 SS G_CDS: 5.35 Total: 1.25 kcal Atomic # 7 Polarization: -94.09 SS G_CDS: -3.89 Total: -97.98 kcal Atomic # 8 Polarization: -43.46 SS G_CDS: -1.67 Total: -45.13 kcal Atomic # 14 Polarization: 47.11 SS G_CDS: 2.03 Total: 49.13 kcal Total: -91.27 2.24 -89.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000569790719.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.542 kcal (2) G-P(sol) polarization free energy of solvation -91.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds