Wall clock time and date at job start Tue Mar 31 2020 19:32:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45208 * 1 3 3 C 1.34228 * 116.99968 * 2 1 4 4 O 1.20822 * 119.99754 * 0.02562 * 3 2 1 5 5 C 1.50695 * 119.99804 * 179.97438 * 3 2 1 6 6 N 1.46503 * 109.47070 * 179.97438 * 5 3 2 7 7 C 1.37092 * 119.99857 * 263.99414 * 6 5 3 8 8 H 1.08006 * 119.99708 * 196.99177 * 7 6 5 9 9 C 1.38951 * 120.00382 * 16.99401 * 7 6 5 10 10 N 1.31409 * 119.99613 * 21.27144 * 9 7 6 11 11 Si 1.86795 * 120.00072 * 201.27105 * 9 7 6 12 12 H 1.48503 * 109.47222 * 59.99736 * 11 9 7 13 13 H 1.48496 * 109.47149 * 179.97438 * 11 9 7 14 14 H 1.48506 * 109.47193 * 299.99902 * 11 9 7 15 15 C 1.34776 * 119.99777 * 83.99544 * 6 5 3 16 16 O 1.21295 * 120.00053 * 359.97438 * 15 6 5 17 17 C 1.50704 * 119.99805 * 180.27725 * 15 6 5 18 18 C 1.53778 * 113.60983 * 277.21803 * 17 15 6 19 19 C 1.53785 * 87.08083 * 220.01676 * 18 17 15 20 20 C 1.50703 * 113.61248 * 139.98039 * 19 18 17 21 21 C 1.38243 * 119.97418 * 322.23453 * 20 19 18 22 22 C 1.38197 * 120.02478 * 179.72281 * 21 20 19 23 23 C 1.38463 * 119.97366 * 0.57158 * 22 21 20 24 24 F 1.35098 * 120.03082 * 179.67607 * 23 22 21 25 25 C 1.38463 * 119.94722 * 359.70418 * 23 22 21 26 26 C 1.38200 * 119.97511 * 359.97438 * 25 23 22 27 27 C 1.53783 * 113.61078 * 179.72392 * 17 15 6 28 28 H 1.09000 * 109.46904 * 299.99703 * 1 2 3 29 29 H 1.09002 * 109.47097 * 59.99755 * 1 2 3 30 30 H 1.09005 * 109.47125 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.47245 * 60.00293 * 5 3 2 32 32 H 1.08997 * 109.47237 * 300.00480 * 5 3 2 33 33 H 0.97001 * 119.99760 * 180.02562 * 10 9 7 34 34 H 1.08992 * 112.84986 * 48.52726 * 17 15 6 35 35 H 1.08996 * 113.61906 * 334.56537 * 18 17 15 36 36 H 1.09002 * 113.61047 * 105.47320 * 18 17 15 37 37 H 1.08993 * 113.62021 * 270.88617 * 19 18 17 38 38 H 1.08001 * 119.99028 * 359.97438 * 21 20 19 39 39 H 1.07996 * 120.01852 * 180.24926 * 22 21 20 40 40 H 1.07998 * 120.01353 * 179.97438 * 25 23 22 41 41 H 1.07997 * 119.99135 * 180.02562 * 26 25 23 42 42 H 1.09000 * 113.61211 * 254.52465 * 27 17 15 43 43 H 1.09001 * 113.61646 * 25.42901 * 27 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2748 0.0006 6 7 3.9818 2.6797 -0.0002 7 6 4.2957 3.3010 -1.1812 8 1 4.8547 4.2252 -1.1732 9 6 3.8949 2.7419 -2.3884 10 7 2.8952 1.8895 -2.4179 11 14 4.7770 3.2020 -3.9694 12 1 6.2112 2.8325 -3.8616 13 1 4.1630 2.4739 -5.1087 14 1 4.6584 4.6651 -4.1947 15 6 4.0552 3.3613 1.1603 16 8 3.7770 2.8116 2.2051 17 6 4.4765 4.8082 1.1588 18 6 6.0012 5.0057 1.1258 19 6 5.7948 6.1567 2.1247 20 6 6.8448 6.2148 3.2041 21 6 7.3440 5.0450 3.7458 22 6 8.3111 5.0970 4.7316 23 6 8.7714 6.3215 5.1853 24 9 9.7119 6.3738 6.1536 25 6 8.2664 7.4926 4.6460 26 6 7.3042 7.4381 3.6555 27 6 4.5036 5.4432 2.5592 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 3.9565 0.7805 -0.8892 32 1 3.9557 0.7808 0.8907 33 1 2.6155 1.4989 -3.2606 34 1 3.9416 5.4041 0.4195 35 1 6.5595 4.1651 1.5377 36 1 6.3784 5.3314 0.1564 37 1 5.6214 7.1219 1.6490 38 1 6.9811 4.0900 3.3955 39 1 8.7039 4.1830 5.1519 40 1 8.6244 8.4484 4.9993 41 1 6.9105 8.3513 3.2345 42 1 3.6717 6.1221 2.7469 43 1 4.6523 4.7221 3.3629 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590035857.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:32:17 Heat of formation + Delta-G solvation = -109.947328 kcal Electronic energy + Delta-G solvation = -28887.564349 eV Core-core repulsion = 24620.589885 eV Total energy + Delta-G solvation = -4266.974464 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.137 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -48.92417 -40.22341 -39.33546 -38.45004 -36.79171 -35.30331 -34.59350 -31.60266 -31.19373 -30.76407 -28.68106 -26.57406 -25.53202 -25.25676 -24.41770 -23.15466 -22.06399 -20.33249 -19.40924 -18.79784 -17.84512 -17.17336 -16.58051 -16.48556 -16.18382 -15.62554 -15.48942 -15.37265 -15.16734 -14.86973 -14.49709 -14.35222 -13.97387 -13.61086 -13.46894 -13.08592 -12.91286 -12.80082 -12.47971 -12.34338 -12.06618 -11.87309 -11.62214 -11.36522 -11.30693 -11.26168 -11.14733 -10.82910 -10.57885 -10.51962 -10.39329 -10.17342 -10.00331 -9.82261 -9.58078 -9.13812 -9.02742 -8.51881 -8.46451 -7.97939 -6.53260 -4.01112 1.11199 1.20266 3.05866 3.16326 3.17356 3.44630 3.54414 3.68537 3.97786 4.05889 4.22602 4.54234 4.67122 4.81241 4.89926 4.93405 4.99314 5.14466 5.27272 5.29815 5.37330 5.42662 5.69359 5.77373 5.84197 5.94280 5.98003 6.03019 6.07673 6.10889 6.13270 6.21086 6.27381 6.28149 6.35733 6.41507 6.47430 6.63774 6.64318 6.86512 6.92504 7.32777 7.45452 7.58193 8.21675 8.95528 9.10258 9.35709 9.76193 10.54407 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.014776 B = 0.003068 C = 0.002722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1894.460424 B = 9124.846607 C =10283.170672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.376 6.376 3 C 0.485 3.515 4 O -0.499 6.499 5 C 0.156 3.844 6 N -0.427 5.427 7 C -0.333 4.333 8 H 0.105 0.895 9 C 0.037 3.963 10 N -0.869 5.869 11 Si 0.923 3.077 12 H -0.272 1.272 13 H -0.284 1.284 14 H -0.273 1.273 15 C 0.479 3.521 16 O -0.602 6.602 17 C -0.109 4.109 18 C -0.110 4.110 19 C -0.081 4.081 20 C -0.068 4.068 21 C -0.084 4.084 22 C -0.150 4.150 23 C 0.083 3.917 24 F -0.146 7.146 25 C -0.155 4.155 26 C -0.091 4.091 27 C -0.107 4.107 28 H 0.050 0.950 29 H 0.055 0.945 30 H 0.085 0.915 31 H 0.122 0.878 32 H 0.081 0.919 33 H 0.273 0.727 34 H 0.108 0.892 35 H 0.084 0.916 36 H 0.075 0.925 37 H 0.099 0.901 38 H 0.138 0.862 39 H 0.133 0.867 40 H 0.131 0.869 41 H 0.131 0.869 42 H 0.066 0.934 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.613 4.913 6.242 10.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 O -0.294 6.294 3 C 0.326 3.674 4 O -0.384 6.384 5 C 0.030 3.970 6 N -0.145 5.145 7 C -0.460 4.460 8 H 0.123 0.877 9 C -0.168 4.168 10 N -0.506 5.506 11 Si 0.750 3.250 12 H -0.197 1.197 13 H -0.210 1.210 14 H -0.198 1.198 15 C 0.268 3.732 16 O -0.488 6.488 17 C -0.130 4.130 18 C -0.147 4.147 19 C -0.099 4.099 20 C -0.068 4.068 21 C -0.101 4.101 22 C -0.169 4.169 23 C 0.064 3.936 24 F -0.124 7.124 25 C -0.174 4.174 26 C -0.109 4.109 27 C -0.144 4.144 28 H 0.068 0.932 29 H 0.074 0.926 30 H 0.104 0.896 31 H 0.139 0.861 32 H 0.099 0.901 33 H 0.083 0.917 34 H 0.126 0.874 35 H 0.103 0.897 36 H 0.094 0.906 37 H 0.117 0.883 38 H 0.155 0.845 39 H 0.151 0.849 40 H 0.149 0.851 41 H 0.149 0.851 42 H 0.085 0.915 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 6.163 4.828 6.612 10.247 hybrid contribution 0.091 0.290 -0.997 1.042 sum 6.254 5.118 5.615 9.840 Atomic orbital electron populations 1.22930 0.78739 1.01786 1.01624 1.86457 1.21666 1.35547 1.85720 1.23962 0.92300 0.80549 0.70602 1.90509 1.66492 1.36383 1.45002 1.20461 0.87214 0.85916 1.03423 1.43395 1.56889 1.07929 1.06287 1.19604 1.34447 1.09847 0.82140 0.87701 1.25220 0.94809 0.97171 0.99611 1.69844 1.22243 1.30543 1.28012 0.86052 0.79610 0.78813 0.80571 1.19726 1.20965 1.19820 1.19993 0.81670 0.87973 0.83532 1.90524 1.55627 1.70452 1.32224 1.22340 0.97068 0.95143 0.98447 1.22930 0.95585 0.97225 0.98989 1.21626 0.94184 0.99450 0.94650 1.19919 0.96988 0.92703 0.97203 1.21047 0.94971 0.99262 0.94859 1.21150 0.99601 0.96634 0.99517 1.17723 0.90935 0.94814 0.90101 1.91473 1.62757 1.97371 1.60847 1.21082 0.99735 0.97235 0.99315 1.20932 0.96017 0.97911 0.96048 1.22922 0.95463 0.98591 0.97465 0.93166 0.92631 0.89624 0.86072 0.90134 0.91678 0.87372 0.89743 0.90619 0.88295 0.84451 0.84897 0.85111 0.85128 0.91527 0.88797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.76 10.56 101.05 1.07 1.83 16 2 O -0.38 -8.12 10.57 -39.25 -0.41 -8.53 16 3 C 0.48 11.96 6.13 36.00 0.22 12.18 16 4 O -0.50 -13.83 15.76 -18.75 -0.30 -14.12 16 5 C 0.16 3.67 5.14 -5.19 -0.03 3.64 16 6 N -0.43 -10.30 2.18 -116.09 -0.25 -10.55 16 7 C -0.33 -7.95 9.04 -14.94 -0.13 -8.08 16 8 H 0.11 2.32 6.12 -52.48 -0.32 1.99 16 9 C 0.04 0.88 4.88 -17.47 -0.09 0.80 16 10 N -0.87 -22.00 9.27 55.50 0.51 -21.49 16 11 Si 0.92 18.61 29.60 -169.99 -5.03 13.58 16 12 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 13 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 14 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 15 C 0.48 11.07 6.94 -10.98 -0.08 11.00 16 16 O -0.60 -15.24 15.58 5.54 0.09 -15.15 16 17 C -0.11 -2.01 2.76 -90.96 -0.25 -2.26 16 18 C -0.11 -1.66 6.55 -25.92 -0.17 -1.83 16 19 C -0.08 -1.05 3.98 -90.95 -0.36 -1.41 16 20 C -0.07 -0.84 5.29 -104.62 -0.55 -1.39 16 21 C -0.08 -1.06 8.59 -39.59 -0.34 -1.40 16 22 C -0.15 -1.80 10.03 -39.51 -0.40 -2.20 16 23 C 0.08 1.01 7.30 -39.42 -0.29 0.72 16 24 F -0.15 -1.82 17.27 2.25 0.04 -1.78 16 25 C -0.15 -1.67 10.03 -39.51 -0.40 -2.07 16 26 C -0.09 -0.98 9.71 -39.59 -0.38 -1.37 16 27 C -0.11 -1.69 6.87 -25.91 -0.18 -1.87 16 28 H 0.05 0.86 8.13 -51.93 -0.42 0.44 16 29 H 0.05 1.00 8.13 -51.93 -0.42 0.58 16 30 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 31 H 0.12 2.83 6.38 -51.93 -0.33 2.50 16 32 H 0.08 1.77 7.61 -51.93 -0.40 1.38 16 33 H 0.27 6.65 8.31 -40.82 -0.34 6.31 16 34 H 0.11 2.03 7.70 -51.93 -0.40 1.63 16 35 H 0.08 1.30 6.27 -51.93 -0.33 0.98 16 36 H 0.08 1.08 7.93 -51.93 -0.41 0.67 16 37 H 0.10 1.12 8.09 -51.93 -0.42 0.70 16 38 H 0.14 1.81 6.67 -52.49 -0.35 1.46 16 39 H 0.13 1.38 8.06 -52.49 -0.42 0.95 16 40 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 41 H 0.13 1.12 8.05 -52.49 -0.42 0.70 16 42 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 43 H 0.09 1.63 7.00 -51.93 -0.36 1.26 16 LS Contribution 364.15 15.07 5.49 5.49 Total: -1.00 -30.56 364.15 -7.64 -38.20 By element: Atomic # 1 Polarization: 13.49 SS G_CDS: -5.41 Total: 8.08 kcal Atomic # 6 Polarization: 8.64 SS G_CDS: -2.35 Total: 6.28 kcal Atomic # 7 Polarization: -32.30 SS G_CDS: 0.26 Total: -32.04 kcal Atomic # 8 Polarization: -37.18 SS G_CDS: -0.62 Total: -37.80 kcal Atomic # 9 Polarization: -1.82 SS G_CDS: 0.04 Total: -1.78 kcal Atomic # 14 Polarization: 18.61 SS G_CDS: -5.03 Total: 13.58 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -30.56 -7.64 -38.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590035857.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.750 kcal (2) G-P(sol) polarization free energy of solvation -30.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds