Wall clock time and date at job start Tue Mar 31 2020 19:32:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45208 * 1 3 3 C 1.34228 * 116.99968 * 2 1 4 4 O 1.20822 * 119.99754 * 0.02562 * 3 2 1 5 5 C 1.50695 * 119.99804 * 179.97438 * 3 2 1 6 6 N 1.46503 * 109.47070 * 179.97438 * 5 3 2 7 7 C 1.37092 * 119.99857 * 263.99414 * 6 5 3 8 8 H 1.08006 * 119.99708 * 196.99177 * 7 6 5 9 9 C 1.38951 * 120.00382 * 16.99401 * 7 6 5 10 10 N 1.31409 * 119.99613 * 21.27144 * 9 7 6 11 11 Si 1.86795 * 120.00072 * 201.27105 * 9 7 6 12 12 H 1.48503 * 109.47222 * 59.99736 * 11 9 7 13 13 H 1.48496 * 109.47149 * 179.97438 * 11 9 7 14 14 H 1.48506 * 109.47193 * 299.99902 * 11 9 7 15 15 C 1.34776 * 119.99777 * 83.99544 * 6 5 3 16 16 O 1.21295 * 120.00053 * 359.97438 * 15 6 5 17 17 C 1.50704 * 119.99805 * 180.27725 * 15 6 5 18 18 C 1.53778 * 113.60983 * 277.21803 * 17 15 6 19 19 C 1.53785 * 87.08083 * 220.01676 * 18 17 15 20 20 C 1.50703 * 113.61248 * 139.98039 * 19 18 17 21 21 C 1.38243 * 119.97418 * 322.23453 * 20 19 18 22 22 C 1.38197 * 120.02478 * 179.72281 * 21 20 19 23 23 C 1.38463 * 119.97366 * 0.57158 * 22 21 20 24 24 F 1.35098 * 120.03082 * 179.67607 * 23 22 21 25 25 C 1.38463 * 119.94722 * 359.70418 * 23 22 21 26 26 C 1.38200 * 119.97511 * 359.97438 * 25 23 22 27 27 C 1.53783 * 113.61078 * 179.72392 * 17 15 6 28 28 H 1.09000 * 109.46904 * 299.99703 * 1 2 3 29 29 H 1.09002 * 109.47097 * 59.99755 * 1 2 3 30 30 H 1.09005 * 109.47125 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.47245 * 60.00293 * 5 3 2 32 32 H 1.08997 * 109.47237 * 300.00480 * 5 3 2 33 33 H 0.97001 * 119.99760 * 180.02562 * 10 9 7 34 34 H 1.08992 * 112.84986 * 48.52726 * 17 15 6 35 35 H 1.08996 * 113.61906 * 334.56537 * 18 17 15 36 36 H 1.09002 * 113.61047 * 105.47320 * 18 17 15 37 37 H 1.08993 * 113.62021 * 270.88617 * 19 18 17 38 38 H 1.08001 * 119.99028 * 359.97438 * 21 20 19 39 39 H 1.07996 * 120.01852 * 180.24926 * 22 21 20 40 40 H 1.07998 * 120.01353 * 179.97438 * 25 23 22 41 41 H 1.07997 * 119.99135 * 180.02562 * 26 25 23 42 42 H 1.09000 * 113.61211 * 254.52465 * 27 17 15 43 43 H 1.09001 * 113.61646 * 25.42901 * 27 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2748 0.0006 6 7 3.9818 2.6797 -0.0002 7 6 4.2957 3.3010 -1.1812 8 1 4.8547 4.2252 -1.1732 9 6 3.8949 2.7419 -2.3884 10 7 2.8952 1.8895 -2.4179 11 14 4.7770 3.2020 -3.9694 12 1 6.2112 2.8325 -3.8616 13 1 4.1630 2.4739 -5.1087 14 1 4.6584 4.6651 -4.1947 15 6 4.0552 3.3613 1.1603 16 8 3.7770 2.8116 2.2051 17 6 4.4765 4.8082 1.1588 18 6 6.0012 5.0057 1.1258 19 6 5.7948 6.1567 2.1247 20 6 6.8448 6.2148 3.2041 21 6 7.3440 5.0450 3.7458 22 6 8.3111 5.0970 4.7316 23 6 8.7714 6.3215 5.1853 24 9 9.7119 6.3738 6.1536 25 6 8.2664 7.4926 4.6460 26 6 7.3042 7.4381 3.6555 27 6 4.5036 5.4432 2.5592 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 3.9565 0.7805 -0.8892 32 1 3.9557 0.7808 0.8907 33 1 2.6155 1.4989 -3.2606 34 1 3.9416 5.4041 0.4195 35 1 6.5595 4.1651 1.5377 36 1 6.3784 5.3314 0.1564 37 1 5.6214 7.1219 1.6490 38 1 6.9811 4.0900 3.3955 39 1 8.7039 4.1830 5.1519 40 1 8.6244 8.4484 4.9993 41 1 6.9105 8.3513 3.2345 42 1 3.6717 6.1221 2.7469 43 1 4.6523 4.7221 3.3629 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590035857.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:32:17 Heat of formation + Delta-G solvation = -124.736454 kcal Electronic energy + Delta-G solvation = -28888.205654 eV Core-core repulsion = 24620.589885 eV Total energy + Delta-G solvation = -4267.615769 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.137 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.85932 -41.63903 -40.98240 -39.87149 -38.15384 -37.12952 -36.48377 -33.45433 -32.08290 -31.83294 -30.37973 -28.07610 -27.12797 -26.50823 -25.94894 -24.08588 -23.25628 -21.98870 -21.03257 -20.17118 -19.03531 -18.54353 -18.40738 -18.16410 -17.25999 -17.22624 -16.97648 -16.58520 -16.55291 -16.23656 -16.05441 -15.81929 -15.23845 -15.00545 -14.46107 -14.39819 -14.25193 -14.17360 -13.96947 -13.81346 -13.44772 -13.31623 -13.05592 -12.94127 -12.83646 -12.59321 -12.48630 -12.28782 -12.17775 -12.09095 -11.64319 -11.58250 -11.49605 -11.43401 -11.23625 -10.90426 -10.29162 -10.00969 -9.85113 -9.42025 -8.34961 -5.88672 0.18408 0.33132 1.44664 1.52598 1.61269 1.69601 1.80352 2.26993 2.35780 2.62207 2.91205 3.15865 3.33227 3.66521 3.75580 3.89403 3.92486 4.01527 4.07589 4.20909 4.24543 4.33934 4.39219 4.39671 4.44170 4.46820 4.63304 4.68520 4.80972 4.82824 4.88178 4.96140 5.04071 5.11008 5.12278 5.20946 5.23871 5.34874 5.50092 5.51946 5.63851 5.75856 5.77075 5.98611 6.37493 7.11073 7.21389 7.53990 7.94442 8.72726 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.014776 B = 0.003068 C = 0.002722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1894.460424 B = 9124.846607 C =10283.170672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.378 6.378 3 C 0.486 3.514 4 O -0.538 6.538 5 C 0.152 3.848 6 N -0.439 5.439 7 C -0.346 4.346 8 H 0.121 0.879 9 C -0.006 4.006 10 N -0.899 5.899 11 Si 0.992 3.008 12 H -0.262 1.262 13 H -0.291 1.291 14 H -0.266 1.266 15 C 0.466 3.534 16 O -0.634 6.634 17 C -0.118 4.118 18 C -0.104 4.104 19 C -0.055 4.055 20 C -0.079 4.079 21 C -0.096 4.096 22 C -0.158 4.158 23 C 0.071 3.929 24 F -0.150 7.150 25 C -0.151 4.151 26 C -0.083 4.083 27 C -0.106 4.106 28 H 0.050 0.950 29 H 0.045 0.955 30 H 0.134 0.866 31 H 0.120 0.880 32 H 0.087 0.913 33 H 0.270 0.730 34 H 0.106 0.894 35 H 0.075 0.925 36 H 0.088 0.912 37 H 0.128 0.872 38 H 0.124 0.876 39 H 0.140 0.860 40 H 0.156 0.844 41 H 0.162 0.838 42 H 0.075 0.925 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.749 6.805 5.795 11.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.295 6.295 3 C 0.329 3.671 4 O -0.426 6.426 5 C 0.026 3.974 6 N -0.156 5.156 7 C -0.473 4.473 8 H 0.138 0.862 9 C -0.208 4.208 10 N -0.538 5.538 11 Si 0.816 3.184 12 H -0.186 1.186 13 H -0.217 1.217 14 H -0.191 1.191 15 C 0.257 3.743 16 O -0.522 6.522 17 C -0.139 4.139 18 C -0.141 4.141 19 C -0.073 4.073 20 C -0.079 4.079 21 C -0.114 4.114 22 C -0.177 4.177 23 C 0.052 3.948 24 F -0.129 7.129 25 C -0.169 4.169 26 C -0.100 4.100 27 C -0.144 4.144 28 H 0.068 0.932 29 H 0.064 0.936 30 H 0.152 0.848 31 H 0.137 0.863 32 H 0.105 0.895 33 H 0.080 0.920 34 H 0.124 0.876 35 H 0.094 0.906 36 H 0.107 0.893 37 H 0.146 0.854 38 H 0.142 0.858 39 H 0.158 0.842 40 H 0.174 0.826 41 H 0.179 0.821 42 H 0.094 0.906 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 7.311 6.707 6.172 11.684 hybrid contribution -0.345 -0.394 -0.784 0.943 sum 6.966 6.313 5.389 10.836 Atomic orbital electron populations 1.23291 0.76227 1.04861 1.01157 1.86426 1.24113 1.33889 1.85045 1.24129 0.92701 0.80741 0.69504 1.90472 1.67365 1.37711 1.47025 1.20510 0.86992 0.86429 1.03475 1.43659 1.56965 1.08129 1.06887 1.20036 1.34501 1.10527 0.82191 0.86184 1.26095 0.95056 0.97100 1.02523 1.69963 1.23577 1.31862 1.28416 0.84994 0.78618 0.78543 0.76242 1.18648 1.21718 1.19111 1.20897 0.80829 0.89758 0.82795 1.90484 1.56878 1.71651 1.33176 1.22444 0.99441 0.91821 1.00202 1.22905 0.92730 0.98077 1.00425 1.21490 0.92349 0.99571 0.93858 1.19917 0.97260 0.93309 0.97447 1.21015 0.95656 0.99168 0.95574 1.21250 0.99600 0.97348 0.99512 1.17941 0.91143 0.95394 0.90295 1.91462 1.62968 1.97408 1.61071 1.21390 0.99098 0.97763 0.98693 1.21222 0.95234 0.98218 0.95366 1.22878 0.97744 0.98491 0.95272 0.93161 0.93619 0.84765 0.86261 0.89525 0.92030 0.87627 0.90631 0.89313 0.85376 0.85849 0.84180 0.82613 0.82095 0.90610 0.90849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.31 10.56 113.37 1.20 2.51 16 2 O -0.38 -16.44 10.57 -51.40 -0.54 -16.99 16 3 C 0.49 24.64 6.13 71.23 0.44 25.08 16 4 O -0.54 -30.69 15.76 21.98 0.35 -30.34 16 5 C 0.15 7.38 5.14 85.63 0.44 7.82 16 6 N -0.44 -21.63 2.18 -639.58 -1.39 -23.03 16 7 C -0.35 -16.52 9.04 84.04 0.76 -15.76 16 8 H 0.12 5.20 6.12 -2.91 -0.02 5.18 16 9 C -0.01 -0.30 4.88 84.93 0.41 0.11 16 10 N -0.90 -46.22 9.27 21.66 0.20 -46.02 16 11 Si 0.99 37.67 29.60 68.60 2.03 39.70 16 12 H -0.26 -9.45 7.11 99.48 0.71 -8.74 16 13 H -0.29 -11.30 7.11 99.48 0.71 -10.60 16 14 H -0.27 -9.77 7.11 99.48 0.71 -9.06 16 15 C 0.47 22.11 6.94 87.66 0.61 22.72 16 16 O -0.63 -33.27 15.58 -3.08 -0.05 -33.32 16 17 C -0.12 -4.33 2.76 -11.01 -0.03 -4.36 16 18 C -0.10 -3.02 6.55 31.12 0.20 -2.81 16 19 C -0.05 -1.30 3.98 -11.01 -0.04 -1.34 16 20 C -0.08 -1.79 5.29 -19.86 -0.11 -1.90 16 21 C -0.10 -2.40 8.59 22.26 0.19 -2.21 16 22 C -0.16 -3.70 10.03 22.31 0.22 -3.47 16 23 C 0.07 1.60 7.30 22.38 0.16 1.77 16 24 F -0.15 -3.55 17.27 44.97 0.78 -2.77 16 25 C -0.15 -2.80 10.03 22.31 0.22 -2.57 16 26 C -0.08 -1.49 9.71 22.26 0.22 -1.28 16 27 C -0.11 -3.30 6.87 31.12 0.21 -3.09 16 28 H 0.05 1.71 8.13 -2.39 -0.02 1.69 16 29 H 0.04 1.65 8.13 -2.39 -0.02 1.63 16 30 H 0.13 3.25 8.14 -2.38 -0.02 3.23 16 31 H 0.12 5.76 6.38 -2.38 -0.02 5.74 16 32 H 0.09 3.98 7.61 -2.39 -0.02 3.96 16 33 H 0.27 13.37 8.31 -92.71 -0.77 12.60 16 34 H 0.11 3.91 7.70 -2.39 -0.02 3.90 16 35 H 0.08 2.34 6.27 -2.39 -0.01 2.32 16 36 H 0.09 2.34 7.93 -2.39 -0.02 2.32 16 37 H 0.13 2.35 8.09 -2.39 -0.02 2.33 16 38 H 0.12 3.37 6.67 -2.91 -0.02 3.35 16 39 H 0.14 2.91 8.06 -2.91 -0.02 2.88 16 40 H 0.16 2.08 8.06 -2.91 -0.02 2.06 16 41 H 0.16 1.93 8.05 -2.91 -0.02 1.91 16 42 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 43 H 0.07 2.60 7.00 -2.39 -0.02 2.58 16 Total: -1.00 -67.63 364.15 7.53 -60.10 By element: Atomic # 1 Polarization: 30.41 SS G_CDS: 1.04 Total: 31.45 kcal Atomic # 6 Polarization: 16.10 SS G_CDS: 5.11 Total: 21.21 kcal Atomic # 7 Polarization: -67.85 SS G_CDS: -1.19 Total: -69.05 kcal Atomic # 8 Polarization: -80.41 SS G_CDS: -0.24 Total: -80.65 kcal Atomic # 9 Polarization: -3.55 SS G_CDS: 0.78 Total: -2.77 kcal Atomic # 14 Polarization: 37.67 SS G_CDS: 2.03 Total: 39.70 kcal Total: -67.63 7.53 -60.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590035857.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.633 kcal (2) G-P(sol) polarization free energy of solvation -67.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds