Wall clock time and date at job start Tue Mar 31 2020 18:51:56
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46492 * 1
3 3 C 1.34780 * 120.00292 * 2 1
4 4 O 1.21599 * 119.99398 * 359.97438 * 3 2 1
5 5 C 1.47516 * 120.00403 * 180.02562 * 3 2 1
6 6 C 1.39818 * 120.07092 * 0.02562 * 5 3 2
7 7 C 1.37585 * 119.93095 * 179.72231 * 6 5 3
8 8 C 1.39243 * 120.07179 * 0.51221 * 7 6 5
9 9 N 1.39044 * 119.93282 * 179.76478 * 8 7 6
10 10 C 1.48724 * 111.01281 * 309.19997 * 9 8 7
11 11 C 1.54381 * 104.51419 * 158.96984 * 10 9 8
12 12 C 1.54264 * 105.14798 * 336.26719 * 11 10 9
13 13 O 1.42899 * 110.32177 * 118.84967 * 12 11 10
14 14 C 1.50702 * 110.32093 * 240.95263 * 12 11 10
15 15 H 1.07995 * 120.00413 * 24.99811 * 14 12 11
16 16 C 1.37882 * 119.99475 * 204.99638 * 14 12 11
17 17 N 1.31512 * 119.99682 * 174.50693 * 16 14 12
18 18 Si 1.86795 * 120.00132 * 354.50651 * 16 14 12
19 19 H 1.48495 * 109.47350 * 86.42063 * 18 16 14
20 20 H 1.48503 * 109.47008 * 206.41930 * 18 16 14
21 21 H 1.48498 * 109.47376 * 326.41427 * 18 16 14
22 22 C 1.48562 * 111.00012 * 64.71051 * 9 8 7
23 23 C 1.39201 * 120.13260 * 359.48500 * 8 7 6
24 24 N 1.48024 * 119.96299 * 180.27656 * 23 8 7
25 25 O 1.21797 * 119.99670 * 185.31454 * 24 23 8
26 26 O 1.21799 * 119.99764 * 5.31408 * 24 23 8
27 27 C 1.37633 * 120.07277 * 0.25945 * 23 8 7
28 28 H 1.09002 * 109.46875 * 180.02562 * 1 2 3
29 29 H 1.08999 * 109.47082 * 299.99540 * 1 2 3
30 30 H 1.08990 * 109.47552 * 60.00061 * 1 2 3
31 31 H 0.97008 * 120.00335 * 180.02562 * 2 1 3
32 32 H 1.07997 * 120.02837 * 359.95248 * 6 5 3
33 33 H 1.08001 * 119.96730 * 180.27041 * 7 6 5
34 34 H 1.08996 * 110.39082 * 40.24548 * 10 9 8
35 35 H 1.09000 * 110.50791 * 277.75224 * 10 9 8
36 36 H 1.08997 * 110.32112 * 217.31992 * 11 10 9
37 37 H 1.09000 * 110.32616 * 95.21755 * 11 10 9
38 38 H 0.96697 * 114.00525 * 56.19366 * 13 12 11
39 39 H 0.97005 * 119.99952 * 180.02562 * 17 16 14
40 40 H 1.08993 * 110.41000 * 82.18477 * 22 9 8
41 41 H 1.08994 * 110.50846 * 319.78557 * 22 9 8
42 42 H 1.07992 * 120.03327 * 179.97438 * 27 23 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4649 0.0000 0.0000
3 6 2.1389 1.1672 0.0000
4 8 1.5308 2.2202 -0.0005
5 6 3.6140 1.1672 -0.0006
6 6 4.3147 -0.0428 -0.0017
7 6 5.6905 -0.0394 -0.0080
8 6 6.3853 1.1673 -0.0025
9 7 7.7757 1.1673 -0.0039
10 6 8.3101 0.2844 1.0669
11 6 9.7506 -0.0411 0.6170
12 6 9.7490 0.1548 -0.9132
13 8 10.6730 1.1802 -1.2832
14 6 10.0970 -1.1372 -1.6066
15 1 9.9121 -2.0808 -1.1149
16 6 10.6514 -1.1145 -2.8688
17 7 11.0546 -2.2334 -3.4301
18 14 10.8297 0.5055 -3.7816
19 1 12.1091 1.1529 -3.3957
20 1 10.8247 0.2522 -5.2449
21 1 9.6969 1.3990 -3.4302
22 6 8.3068 0.5813 -1.2616
23 6 5.6906 2.3736 -0.0015
24 7 6.4330 3.6542 -0.0018
25 8 5.8299 4.7078 0.0968
26 8 7.6470 3.6543 -0.1007
27 6 4.3143 2.3769 -0.0004
28 1 -0.3633 -1.0277 0.0005
29 1 -0.3633 0.5138 0.8900
30 1 -0.3634 0.5138 -0.8899
31 1 1.9500 -0.8401 -0.0004
32 1 3.7763 -0.9790 -0.0013
33 1 6.2322 -0.9737 -0.0132
34 1 7.7184 -0.6283 1.1370
35 1 8.3195 0.8069 2.0234
36 1 10.0013 -1.0721 0.8664
37 1 10.4575 0.6437 1.0856
38 1 11.5769 1.0243 -0.9772
39 1 11.4450 -2.2174 -4.3180
40 1 8.3125 1.3276 -2.0559
41 1 7.7156 -0.2848 -1.5587
42 1 3.7761 3.3132 0.0008
RHF calculation, no. of doubly occupied orbitals= 62
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000591975700.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 18:51:56
Heat of formation + Delta-G solvation = -27.545441 kcal
Electronic energy + Delta-G solvation = -29603.329607 eV
Core-core repulsion = 25359.848318 eV
Total energy + Delta-G solvation = -4243.481289 eV
No. of doubly occupied orbitals = 62
Molecular weight
(most abundant/longest-lived isotopes) = 335.136 amu
Computer time = 1.21 seconds
Orbital eigenvalues (eV)
-41.95113 -40.68130 -39.75123 -37.99801 -36.16575 -35.43186 -35.16083 -32.46140
-32.33845 -31.69642 -29.30776 -28.42284 -27.41085 -26.02936 -24.76541 -23.55690
-22.78995 -21.38827 -20.65767 -19.75394 -19.47548 -18.29102 -17.67020 -17.41435
-17.15500 -16.97232 -16.63008 -15.67852 -15.47335 -15.15539 -14.81986 -14.77493
-14.35143 -14.26008 -14.00055 -13.54394 -13.37205 -12.86028 -12.82953 -12.72645
-12.47800 -12.18436 -12.00157 -11.72077 -11.41320 -11.14921 -11.03015 -10.84997
-10.67857 -10.63042 -10.47013 -10.34974 -10.12459 -9.88244 -9.66592 -9.30329
-9.18812 -8.70859 -8.57809 -8.33836 -6.27217 -4.40865 -0.16071 0.31048
1.40080 1.61639 2.32826 2.68331 3.19033 3.44840 3.51312 3.66701
3.72261 4.14104 4.23856 4.29136 4.45898 4.55774 4.69664 4.78660
4.94214 5.07211 5.13161 5.16957 5.24582 5.30594 5.35071 5.41945
5.51624 5.58964 5.69103 5.83246 5.94800 5.97848 6.08176 6.36452
6.43037 6.51998 6.64825 6.75590 6.93217 6.96815 7.21798 7.46278
7.70259 8.03456 8.07399 8.60846 8.77623 9.35107 10.80894
Molecular weight = 335.14amu
Principal moments of inertia in cm(-1)
A = 0.014295 B = 0.003690 C = 0.003310
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1958.309929 B = 7586.649650 C = 8458.041702
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.088 3.912
2 N -0.731 5.731
3 C 0.565 3.435
4 O -0.529 6.529
5 C -0.155 4.155
6 C -0.029 4.029
7 C -0.163 4.163
8 C 0.194 3.806
9 N -0.479 5.479
10 C 0.039 3.961
11 C -0.139 4.139
12 C 0.231 3.769
13 O -0.555 6.555
14 C -0.559 4.559
15 H 0.079 0.921
16 C 0.075 3.925
17 N -0.887 5.887
18 Si 0.947 3.053
19 H -0.289 1.289
20 H -0.327 1.327
21 H -0.268 1.268
22 C 0.053 3.947
23 C -0.041 4.041
24 N 0.026 4.974
25 O -0.205 6.205
26 O -0.079 6.079
27 C 0.007 3.993
28 H 0.078 0.922
29 H 0.063 0.937
30 H 0.063 0.937
31 H 0.403 0.597
32 H 0.142 0.858
33 H 0.158 0.842
34 H 0.049 0.951
35 H 0.076 0.924
36 H 0.078 0.922
37 H 0.069 0.931
38 H 0.370 0.630
39 H 0.267 0.733
40 H 0.086 0.914
41 H 0.065 0.935
42 H 0.165 0.835
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -16.184 -0.188 8.948 18.494
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.056 4.056
2 N -0.383 5.383
3 C 0.352 3.648
4 O -0.406 6.406
5 C -0.159 4.159
6 C -0.048 4.048
7 C -0.183 4.183
8 C 0.096 3.904
9 N -0.201 5.201
10 C -0.086 4.086
11 C -0.178 4.178
12 C 0.190 3.810
13 O -0.362 6.362
14 C -0.596 4.596
15 H 0.097 0.903
16 C -0.131 4.131
17 N -0.522 5.522
18 Si 0.782 3.218
19 H -0.216 1.216
20 H -0.259 1.259
21 H -0.194 1.194
22 C -0.071 4.071
23 C -0.126 4.126
24 N 0.549 4.451
25 O -0.406 6.406
26 O -0.314 6.314
27 C -0.013 4.013
28 H 0.097 0.903
29 H 0.081 0.919
30 H 0.082 0.918
31 H 0.238 0.762
32 H 0.160 0.840
33 H 0.175 0.825
34 H 0.067 0.933
35 H 0.095 0.905
36 H 0.096 0.904
37 H 0.088 0.912
38 H 0.218 0.782
39 H 0.077 0.923
40 H 0.105 0.895
41 H 0.083 0.917
42 H 0.182 0.818
Dipole moment (debyes) X Y Z Total
from point charges -17.420 0.723 8.618 19.449
hybrid contribution 0.673 -0.567 -0.389 0.963
sum -16.747 0.156 8.229 18.660
Atomic orbital electron populations
1.21594 0.78684 1.02602 1.02732 1.45661 1.08184 1.08403 1.76067
1.17909 0.86524 0.84019 0.76331 1.90831 1.69650 1.30987 1.49100
1.19697 0.93426 0.93069 1.09744 1.21512 0.94261 0.97343 0.91691
1.21889 0.94514 0.99012 1.02905 1.19271 0.92636 0.90179 0.88308
1.63394 1.00404 1.49710 1.06580 1.23284 0.97186 0.93946 0.94205
1.23070 0.94207 1.01800 0.98691 1.19732 0.85327 0.86164 0.89741
1.86175 1.21996 1.49717 1.78338 1.21355 1.44479 0.91564 1.02244
0.90303 1.25169 0.93007 0.97735 0.97178 1.69962 1.38718 1.27579
1.15921 0.85713 0.79849 0.81820 0.74404 1.21622 1.25899 1.19400
1.23866 0.96493 0.97574 0.89139 1.21011 0.91647 0.84177 1.15733
1.43299 1.01650 1.01719 0.98468 1.94514 1.70605 1.19397 1.56044
1.94700 0.94326 1.93741 1.48596 1.20957 0.90729 1.00234 0.89381
0.90273 0.91875 0.91841 0.76229 0.84017 0.82487 0.93255 0.90539
0.90383 0.91203 0.78194 0.92348 0.89526 0.91723 0.81783
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.09 0.49 10.70 59.84 0.64 1.13 16
2 N -0.73 -5.12 5.66 -68.16 -0.39 -5.50 16
3 C 0.57 6.16 7.76 -12.48 -0.10 6.06 16
4 O -0.53 -7.71 16.34 5.28 0.09 -7.62 16
5 C -0.16 -1.69 5.88 -104.95 -0.62 -2.31 16
6 C -0.03 -0.25 9.53 -39.23 -0.37 -0.62 16
7 C -0.16 -1.85 8.07 -39.45 -0.32 -2.16 16
8 C 0.19 2.89 4.89 -83.86 -0.41 2.48 16
9 N -0.48 -8.21 3.25 -166.58 -0.54 -8.75 16
10 C 0.04 0.59 6.33 -2.09 -0.01 0.58 16
11 C -0.14 -2.39 6.40 -25.35 -0.16 -2.56 16
12 C 0.23 4.82 0.90 -90.39 -0.08 4.74 16
13 O -0.55 -11.96 8.35 -35.23 -0.29 -12.26 16
14 C -0.56 -13.90 8.59 -34.44 -0.30 -14.20 16
15 H 0.08 2.10 7.84 -52.49 -0.41 1.69 16
16 C 0.07 1.99 5.46 -17.82 -0.10 1.90 16
17 N -0.89 -25.35 13.96 55.43 0.77 -24.57 16
18 Si 0.95 23.14 24.83 -169.99 -4.22 18.92 16
19 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16
20 H -0.33 -8.25 7.11 56.52 0.40 -7.85 16
21 H -0.27 -6.58 5.28 56.52 0.30 -6.29 16
22 C 0.05 1.05 5.19 -2.18 -0.01 1.04 16
23 C -0.04 -0.64 6.85 -79.81 -0.55 -1.19 16
24 N 0.03 0.47 4.45 34.03 0.15 0.62 16
25 O -0.20 -3.73 18.45 -29.46 -0.54 -4.28 16
26 O -0.08 -1.59 17.11 -29.46 -0.50 -2.09 16
27 C 0.01 0.10 9.09 -39.23 -0.36 -0.26 16
28 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16
29 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16
30 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16
31 H 0.40 1.61 6.85 -40.82 -0.28 1.33 16
32 H 0.14 0.64 6.39 -52.49 -0.34 0.30 16
33 H 0.16 1.63 6.69 -52.49 -0.35 1.28 16
34 H 0.05 0.65 6.18 -51.93 -0.32 0.33 16
35 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16
36 H 0.08 1.33 7.57 -51.93 -0.39 0.94 16
37 H 0.07 1.13 7.98 -51.93 -0.41 0.72 16
38 H 0.37 6.93 8.97 45.56 0.41 7.34 16
39 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16
40 H 0.09 1.92 6.52 -51.93 -0.34 1.58 16
41 H 0.06 1.24 6.80 -51.93 -0.35 0.88 16
42 H 0.16 2.24 7.19 -52.49 -0.38 1.86 16
LS Contribution 347.38 15.07 5.23 5.23
Total: -1.00 -33.69 347.38 -7.08 -40.77
By element:
Atomic # 1 Polarization: 8.98 SS G_CDS: -4.10 Total: 4.89 kcal
Atomic # 6 Polarization: -2.62 SS G_CDS: -2.74 Total: -5.36 kcal
Atomic # 7 Polarization: -38.21 SS G_CDS: 0.00 Total: -38.21 kcal
Atomic # 8 Polarization: -24.99 SS G_CDS: -1.26 Total: -26.25 kcal
Atomic # 14 Polarization: 23.14 SS G_CDS: -4.22 Total: 18.92 kcal
Total LS contribution 5.23 Total: 5.23 kcal
Total: -33.69 -7.08 -40.77 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000591975700.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 13.227 kcal
(2) G-P(sol) polarization free energy of solvation -33.694 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.467 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.078 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.772 kcal
(6) G-S(sol) free energy of system = (1) + (5) -27.545 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.21 seconds