Wall clock time and date at job start Tue Mar 31 2020 19:11:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35688 * 116.99950 * 2 1 4 4 C 1.38662 * 119.64769 * 180.29956 * 3 2 1 5 5 C 1.39175 * 119.01939 * 180.24904 * 4 3 2 6 6 N 1.39400 * 120.83218 * 179.73428 * 5 4 3 7 7 C 1.34776 * 119.99994 * 327.22250 * 6 5 4 8 8 O 1.21365 * 120.00343 * 354.73558 * 7 6 5 9 9 C 1.49378 * 119.99925 * 174.73678 * 7 6 5 10 10 O 1.21353 * 120.00043 * 0.02562 * 9 7 6 11 11 N 1.34787 * 119.99645 * 179.97438 * 9 7 6 12 12 C 1.47418 * 125.65073 * 0.02759 * 11 9 7 13 13 C 1.54905 * 104.92809 * 155.79430 * 12 11 9 14 14 C 1.55440 * 101.45125 * 37.00283 * 13 12 11 15 15 O 1.42901 * 110.70624 * 82.89424 * 14 13 12 16 16 C 1.50700 * 110.85763 * 206.07378 * 14 13 12 17 17 H 1.08002 * 120.00231 * 355.09500 * 16 14 13 18 18 C 1.37876 * 120.00056 * 175.08946 * 16 14 13 19 19 N 1.31519 * 120.00157 * 359.97438 * 18 16 14 20 20 Si 1.86800 * 120.00280 * 180.02562 * 18 16 14 21 21 H 1.48505 * 109.47033 * 60.00234 * 20 18 16 22 22 H 1.48500 * 109.47115 * 179.97438 * 20 18 16 23 23 H 1.48502 * 109.47330 * 300.00198 * 20 18 16 24 24 C 1.47018 * 125.64394 * 179.97438 * 11 9 7 25 25 C 1.39608 * 118.33198 * 359.46882 * 5 4 3 26 26 C 1.37797 * 119.19817 * 0.26355 * 25 5 4 27 27 N 1.32055 * 120.91005 * 0.02562 * 26 25 5 28 28 H 1.08999 * 109.46949 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47257 * 299.99352 * 1 2 3 30 30 H 1.08999 * 109.47288 * 59.99603 * 1 2 3 31 31 H 1.07993 * 120.48857 * 359.97438 * 4 3 2 32 32 H 0.97000 * 120.00310 * 147.22484 * 6 5 4 33 33 H 1.09002 * 110.36561 * 274.68893 * 12 11 9 34 34 H 1.09008 * 110.37087 * 36.89795 * 12 11 9 35 35 H 1.09005 * 111.00569 * 155.13949 * 13 12 11 36 36 H 1.09007 * 111.00510 * 278.98664 * 13 12 11 37 37 H 0.96703 * 113.99840 * 184.99779 * 15 14 13 38 38 H 0.97000 * 120.00384 * 179.97438 * 19 18 16 39 39 H 1.08996 * 109.88408 * 300.50117 * 24 11 9 40 40 H 1.09004 * 109.88394 * 61.51024 * 24 11 9 41 41 H 1.08000 * 120.39753 * 180.29645 * 25 5 4 42 42 H 1.07995 * 119.54338 * 179.97438 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2090 0.0000 4 6 3.4301 1.2731 -0.0063 5 6 4.0483 2.5200 -0.0009 6 7 5.4381 2.6284 -0.0014 7 6 6.1867 1.6994 0.6256 8 8 5.6505 0.8224 1.2709 9 6 7.6763 1.7494 0.5265 10 8 8.2125 2.6266 -0.1182 11 7 8.4249 0.8207 1.1541 12 6 7.9069 -0.2944 1.9674 13 6 9.0227 -1.3682 1.9293 14 6 10.3017 -0.4856 1.9673 15 8 10.6194 -0.1139 3.3101 16 6 11.4639 -1.1971 1.3240 17 1 11.3535 -2.2177 0.9882 18 6 12.6683 -0.5453 1.1639 19 7 12.8027 0.6977 1.5722 20 14 14.1088 -1.4270 0.3659 21 1 13.7366 -1.8365 -1.0123 22 1 15.2791 -0.5146 0.3115 23 1 14.4557 -2.6309 1.1632 24 6 9.8934 0.7514 1.1399 25 6 3.2416 3.6594 -0.0008 26 6 1.8715 3.5131 -0.0003 27 7 1.3173 2.3144 0.0004 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 4.0204 0.3688 -0.0108 32 1 5.8664 3.3723 -0.4530 33 1 7.7304 0.0333 2.9919 34 1 6.9878 -0.6867 1.5318 35 1 8.9686 -2.0190 2.8021 36 1 8.9754 -1.9484 1.0077 37 1 11.3636 0.4993 3.3828 38 1 13.6501 1.1561 1.4600 39 1 10.2497 0.6462 0.1152 40 1 10.3115 1.6534 1.5867 41 1 3.6862 4.6437 -0.0015 42 1 1.2422 4.3907 0.0002 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592300181.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:11:40 Heat of formation + Delta-G solvation = -98.556358 kcal Electronic energy + Delta-G solvation = -28674.737552 eV Core-core repulsion = 24428.176999 eV Total energy + Delta-G solvation = -4246.560553 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.136 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.36219 -40.33817 -38.90458 -37.93567 -37.37848 -35.56585 -34.28862 -32.29767 -31.33918 -30.86988 -30.25936 -28.04198 -27.47332 -26.18993 -24.68388 -23.72167 -22.85180 -21.71491 -20.14001 -19.64410 -18.88029 -17.73661 -17.24851 -16.95268 -16.69489 -16.21630 -16.19450 -15.89652 -15.66604 -15.33166 -14.75392 -14.62954 -14.42244 -14.06490 -13.97879 -13.61724 -13.14138 -13.01545 -12.96502 -12.68044 -12.46578 -12.02781 -11.90700 -11.61105 -11.56056 -11.26083 -11.15325 -11.09123 -10.85858 -10.66688 -10.55348 -10.24370 -10.04317 -9.43543 -9.29042 -8.99252 -8.77400 -8.72654 -8.41894 -8.15875 -6.35298 -4.43995 0.75688 0.95001 1.63998 2.22421 2.87980 3.19231 3.24900 3.26983 3.29745 3.58021 3.63552 4.08093 4.22059 4.42261 4.65820 4.80208 4.88735 4.92735 5.03317 5.08508 5.27839 5.38344 5.40196 5.52472 5.72758 5.73620 5.79552 5.81032 5.95285 6.15207 6.31085 6.42187 6.64046 6.70593 6.74737 6.85065 7.01451 7.11609 7.23772 7.54886 7.62365 7.65963 7.82650 7.94717 8.20805 8.59824 9.22163 9.31289 10.72554 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.023924 B = 0.002491 C = 0.002376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.069859 B =11238.960322 C =11783.176654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.304 6.304 3 C 0.340 3.660 4 C -0.197 4.197 5 C 0.229 3.771 6 N -0.648 5.648 7 C 0.513 3.487 8 O -0.485 6.485 9 C 0.509 3.491 10 O -0.533 6.533 11 N -0.570 5.570 12 C 0.095 3.905 13 C -0.120 4.120 14 C 0.248 3.752 15 O -0.583 6.583 16 C -0.538 4.538 17 H 0.068 0.932 18 C 0.070 3.930 19 N -0.895 5.895 20 Si 0.905 3.095 21 H -0.275 1.275 22 H -0.285 1.285 23 H -0.274 1.274 24 C 0.100 3.900 25 C -0.235 4.235 26 C 0.158 3.842 27 N -0.554 5.554 28 H 0.096 0.904 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.154 0.846 32 H 0.428 0.572 33 H 0.071 0.929 34 H 0.087 0.913 35 H 0.080 0.920 36 H 0.078 0.922 37 H 0.382 0.618 38 H 0.271 0.729 39 H 0.075 0.925 40 H 0.074 0.926 41 H 0.143 0.857 42 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.835 4.481 -3.394 20.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.211 6.211 3 C 0.161 3.839 4 C -0.220 4.220 5 C 0.126 3.874 6 N -0.296 5.296 7 C 0.296 3.704 8 O -0.357 6.357 9 C 0.290 3.710 10 O -0.411 6.411 11 N -0.302 5.302 12 C -0.027 4.027 13 C -0.158 4.158 14 C 0.208 3.792 15 O -0.391 6.391 16 C -0.576 4.576 17 H 0.086 0.914 18 C -0.133 4.133 19 N -0.534 5.534 20 Si 0.732 3.268 21 H -0.200 1.200 22 H -0.211 1.211 23 H -0.199 1.199 24 C -0.021 4.021 25 C -0.258 4.258 26 C 0.002 3.998 27 N -0.280 5.280 28 H 0.114 0.886 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.171 0.829 32 H 0.267 0.733 33 H 0.089 0.911 34 H 0.105 0.895 35 H 0.098 0.902 36 H 0.097 0.903 37 H 0.233 0.767 38 H 0.081 0.919 39 H 0.093 0.907 40 H 0.092 0.908 41 H 0.161 0.839 42 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -21.023 3.707 -3.138 21.576 hybrid contribution 2.188 0.681 -0.781 2.421 sum -18.835 4.388 -3.919 19.732 Atomic orbital electron populations 1.22862 0.77150 1.02975 1.02416 1.86269 1.22912 1.24341 1.87575 1.19502 0.88632 0.84715 0.91059 1.20944 0.92469 0.98886 1.09751 1.17626 0.82863 0.93271 0.93681 1.43175 1.03759 1.28829 1.53834 1.20782 0.89254 0.81538 0.78846 1.90759 1.73887 1.33605 1.37411 1.19199 0.86115 0.83379 0.82268 1.90756 1.73050 1.35515 1.41828 1.48736 1.09768 1.25933 1.45771 1.22699 0.98021 0.86701 0.95258 1.22867 0.93945 0.96709 1.02282 1.19572 0.91311 0.88025 0.80304 1.86135 1.55761 1.68923 1.28314 1.21459 0.95704 1.00011 1.40396 0.91399 1.25084 0.99044 0.94796 0.94368 1.69675 1.26591 1.10567 1.46571 0.86432 0.81014 0.79475 0.79842 1.20002 1.21059 1.19922 1.23315 0.73816 1.02158 1.02801 1.21781 0.94818 0.98443 1.10780 1.22160 0.91866 0.93719 0.92024 1.67334 1.40874 0.98715 1.21066 0.88609 0.92254 0.92295 0.82874 0.73268 0.91090 0.89499 0.90150 0.90346 0.76745 0.91854 0.90668 0.90795 0.83905 0.81840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.34 10.38 101.05 1.05 1.39 16 2 O -0.30 -3.70 10.47 -18.77 -0.20 -3.90 16 3 C 0.34 4.32 7.48 -17.17 -0.13 4.19 16 4 C -0.20 -2.63 8.66 -39.08 -0.34 -2.97 16 5 C 0.23 2.73 6.32 -83.56 -0.53 2.21 16 6 N -0.65 -8.09 5.33 -10.15 -0.05 -8.14 16 7 C 0.51 8.05 7.62 -11.62 -0.09 7.97 16 8 O -0.49 -8.17 11.48 5.48 0.06 -8.11 16 9 C 0.51 9.51 7.91 -11.61 -0.09 9.42 16 10 O -0.53 -10.82 16.81 5.49 0.09 -10.73 16 11 N -0.57 -11.46 3.33 -171.06 -0.57 -12.03 16 12 C 0.10 1.76 6.05 -2.53 -0.02 1.74 16 13 C -0.12 -2.38 6.26 -24.43 -0.15 -2.53 16 14 C 0.25 5.82 0.85 -89.79 -0.08 5.75 16 15 O -0.58 -14.23 13.08 -35.23 -0.46 -14.69 16 16 C -0.54 -13.63 8.13 -34.44 -0.28 -13.91 16 17 H 0.07 1.69 7.78 -52.49 -0.41 1.29 16 18 C 0.07 1.79 5.28 -17.82 -0.09 1.69 16 19 N -0.90 -23.04 10.96 55.43 0.61 -22.43 16 20 Si 0.91 19.96 29.54 -169.99 -5.02 14.94 16 21 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 22 H -0.29 -6.27 7.11 56.52 0.40 -5.87 16 23 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 24 C 0.10 2.30 5.24 -3.07 -0.02 2.28 16 25 C -0.24 -2.15 10.05 -39.23 -0.39 -2.55 16 26 C 0.16 1.41 11.17 -17.62 -0.20 1.21 16 27 N -0.55 -6.27 9.21 -13.41 -0.12 -6.40 16 28 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.06 0.48 8.10 -51.93 -0.42 0.06 16 30 H 0.06 0.46 8.10 -51.93 -0.42 0.04 16 31 H 0.15 2.23 6.48 -52.49 -0.34 1.89 16 32 H 0.43 4.53 8.30 -40.82 -0.34 4.19 16 33 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 34 H 0.09 1.49 6.15 -51.92 -0.32 1.17 16 35 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 36 H 0.08 1.48 8.05 -51.92 -0.42 1.07 16 37 H 0.38 9.48 7.45 45.56 0.34 9.82 16 38 H 0.27 6.74 8.31 -40.82 -0.34 6.40 16 39 H 0.07 1.87 7.81 -51.93 -0.41 1.46 16 40 H 0.07 1.83 7.92 -51.93 -0.41 1.42 16 41 H 0.14 0.92 8.06 -52.49 -0.42 0.50 16 42 H 0.16 0.87 8.06 -52.49 -0.42 0.45 16 LS Contribution 357.93 15.07 5.39 5.39 Total: -1.00 -29.45 357.93 -6.01 -35.46 By element: Atomic # 1 Polarization: 19.13 SS G_CDS: -4.39 Total: 14.74 kcal Atomic # 6 Polarization: 17.24 SS G_CDS: -1.35 Total: 15.89 kcal Atomic # 7 Polarization: -48.86 SS G_CDS: -0.14 Total: -49.00 kcal Atomic # 8 Polarization: -36.93 SS G_CDS: -0.50 Total: -37.43 kcal Atomic # 14 Polarization: 19.96 SS G_CDS: -5.02 Total: 14.94 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -29.45 -6.01 -35.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592300181.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.094 kcal (2) G-P(sol) polarization free energy of solvation -29.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds