Wall clock time and date at job start Tue Mar 31 2020 19:11:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35688 * 116.99950 * 2 1 4 4 C 1.38662 * 119.64769 * 180.29956 * 3 2 1 5 5 C 1.39175 * 119.01939 * 180.24904 * 4 3 2 6 6 N 1.39400 * 120.83218 * 179.73428 * 5 4 3 7 7 C 1.34776 * 119.99994 * 327.22250 * 6 5 4 8 8 O 1.21365 * 120.00343 * 354.73558 * 7 6 5 9 9 C 1.49378 * 119.99925 * 174.73678 * 7 6 5 10 10 O 1.21353 * 120.00043 * 0.02562 * 9 7 6 11 11 N 1.34787 * 119.99645 * 179.97438 * 9 7 6 12 12 C 1.47418 * 125.65073 * 0.02759 * 11 9 7 13 13 C 1.54905 * 104.92809 * 155.79430 * 12 11 9 14 14 C 1.55440 * 101.45125 * 37.00283 * 13 12 11 15 15 O 1.42901 * 110.70624 * 82.89424 * 14 13 12 16 16 C 1.50700 * 110.85763 * 206.07378 * 14 13 12 17 17 H 1.08002 * 120.00231 * 355.09500 * 16 14 13 18 18 C 1.37876 * 120.00056 * 175.08946 * 16 14 13 19 19 N 1.31519 * 120.00157 * 359.97438 * 18 16 14 20 20 Si 1.86800 * 120.00280 * 180.02562 * 18 16 14 21 21 H 1.48505 * 109.47033 * 60.00234 * 20 18 16 22 22 H 1.48500 * 109.47115 * 179.97438 * 20 18 16 23 23 H 1.48502 * 109.47330 * 300.00198 * 20 18 16 24 24 C 1.47018 * 125.64394 * 179.97438 * 11 9 7 25 25 C 1.39608 * 118.33198 * 359.46882 * 5 4 3 26 26 C 1.37797 * 119.19817 * 0.26355 * 25 5 4 27 27 N 1.32055 * 120.91005 * 0.02562 * 26 25 5 28 28 H 1.08999 * 109.46949 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47257 * 299.99352 * 1 2 3 30 30 H 1.08999 * 109.47288 * 59.99603 * 1 2 3 31 31 H 1.07993 * 120.48857 * 359.97438 * 4 3 2 32 32 H 0.97000 * 120.00310 * 147.22484 * 6 5 4 33 33 H 1.09002 * 110.36561 * 274.68893 * 12 11 9 34 34 H 1.09008 * 110.37087 * 36.89795 * 12 11 9 35 35 H 1.09005 * 111.00569 * 155.13949 * 13 12 11 36 36 H 1.09007 * 111.00510 * 278.98664 * 13 12 11 37 37 H 0.96703 * 113.99840 * 184.99779 * 15 14 13 38 38 H 0.97000 * 120.00384 * 179.97438 * 19 18 16 39 39 H 1.08996 * 109.88408 * 300.50117 * 24 11 9 40 40 H 1.09004 * 109.88394 * 61.51024 * 24 11 9 41 41 H 1.08000 * 120.39753 * 180.29645 * 25 5 4 42 42 H 1.07995 * 119.54338 * 179.97438 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2090 0.0000 4 6 3.4301 1.2731 -0.0063 5 6 4.0483 2.5200 -0.0009 6 7 5.4381 2.6284 -0.0014 7 6 6.1867 1.6994 0.6256 8 8 5.6505 0.8224 1.2709 9 6 7.6763 1.7494 0.5265 10 8 8.2125 2.6266 -0.1182 11 7 8.4249 0.8207 1.1541 12 6 7.9069 -0.2944 1.9674 13 6 9.0227 -1.3682 1.9293 14 6 10.3017 -0.4856 1.9673 15 8 10.6194 -0.1139 3.3101 16 6 11.4639 -1.1971 1.3240 17 1 11.3535 -2.2177 0.9882 18 6 12.6683 -0.5453 1.1639 19 7 12.8027 0.6977 1.5722 20 14 14.1088 -1.4270 0.3659 21 1 13.7366 -1.8365 -1.0123 22 1 15.2791 -0.5146 0.3115 23 1 14.4557 -2.6309 1.1632 24 6 9.8934 0.7514 1.1399 25 6 3.2416 3.6594 -0.0008 26 6 1.8715 3.5131 -0.0003 27 7 1.3173 2.3144 0.0004 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 4.0204 0.3688 -0.0108 32 1 5.8664 3.3723 -0.4530 33 1 7.7304 0.0333 2.9919 34 1 6.9878 -0.6867 1.5318 35 1 8.9686 -2.0190 2.8021 36 1 8.9754 -1.9484 1.0077 37 1 11.3636 0.4993 3.3828 38 1 13.6501 1.1561 1.4600 39 1 10.2497 0.6462 0.1152 40 1 10.3115 1.6534 1.5867 41 1 3.6862 4.6437 -0.0015 42 1 1.2422 4.3907 0.0002 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592300181.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:11:39 Heat of formation + Delta-G solvation = -122.816876 kcal Electronic energy + Delta-G solvation = -28675.789567 eV Core-core repulsion = 24428.176999 eV Total energy + Delta-G solvation = -4247.612568 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.136 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.47432 -41.46176 -40.27507 -39.06314 -38.83602 -36.76836 -35.92297 -34.24886 -32.27933 -31.92743 -31.69185 -29.77801 -28.25356 -27.76233 -26.11838 -24.73919 -24.12151 -22.90931 -21.61840 -21.22582 -19.86954 -19.13642 -18.99009 -18.13619 -17.93514 -17.32043 -17.12911 -17.06458 -16.95497 -16.82835 -16.34966 -15.95152 -15.80410 -15.06227 -14.89462 -14.82212 -14.79344 -14.65108 -14.38429 -14.12674 -13.60931 -13.46726 -13.39205 -12.86626 -12.77925 -12.73926 -12.56657 -12.42121 -12.35806 -12.30933 -12.10772 -11.98289 -11.21875 -11.04483 -10.70816 -10.55251 -10.32778 -9.99961 -9.80887 -9.57229 -8.27867 -6.43348 -0.29805 0.14125 0.43262 0.97434 1.43903 1.44814 1.52351 1.90081 2.02984 2.33380 2.40619 2.72815 2.98236 3.04948 3.36635 3.74755 3.85904 4.00783 4.02779 4.08206 4.11297 4.27354 4.37346 4.45332 4.46334 4.58185 4.68955 4.71675 4.78409 4.90350 4.93189 4.98166 5.06254 5.07484 5.29065 5.39667 5.42582 5.71355 5.75132 6.02731 6.21584 6.24793 6.40800 6.63248 6.69912 6.81327 7.26001 7.34039 8.78313 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.023924 B = 0.002491 C = 0.002376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.069859 B =11238.960322 C =11783.176654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.325 6.325 3 C 0.326 3.674 4 C -0.219 4.219 5 C 0.213 3.787 6 N -0.631 5.631 7 C 0.523 3.477 8 O -0.497 6.497 9 C 0.509 3.491 10 O -0.551 6.551 11 N -0.580 5.580 12 C 0.105 3.895 13 C -0.114 4.114 14 C 0.234 3.766 15 O -0.587 6.587 16 C -0.558 4.558 17 H 0.067 0.933 18 C 0.029 3.971 19 N -0.914 5.914 20 Si 0.963 3.037 21 H -0.272 1.272 22 H -0.283 1.283 23 H -0.270 1.270 24 C 0.118 3.882 25 C -0.220 4.220 26 C 0.162 3.838 27 N -0.559 5.559 28 H 0.119 0.881 29 H 0.059 0.941 30 H 0.062 0.938 31 H 0.133 0.867 32 H 0.438 0.562 33 H 0.071 0.929 34 H 0.104 0.896 35 H 0.091 0.909 36 H 0.086 0.914 37 H 0.377 0.623 38 H 0.272 0.728 39 H 0.050 0.950 40 H 0.048 0.952 41 H 0.177 0.823 42 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.724 5.224 -3.827 22.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.232 6.232 3 C 0.148 3.852 4 C -0.242 4.242 5 C 0.110 3.890 6 N -0.279 5.279 7 C 0.305 3.695 8 O -0.370 6.370 9 C 0.291 3.709 10 O -0.431 6.431 11 N -0.312 5.312 12 C -0.016 4.016 13 C -0.152 4.152 14 C 0.194 3.806 15 O -0.395 6.395 16 C -0.596 4.596 17 H 0.085 0.915 18 C -0.172 4.172 19 N -0.552 5.552 20 Si 0.788 3.212 21 H -0.198 1.198 22 H -0.209 1.209 23 H -0.196 1.196 24 C -0.004 4.004 25 C -0.242 4.242 26 C 0.006 3.994 27 N -0.285 5.285 28 H 0.137 0.863 29 H 0.078 0.922 30 H 0.081 0.919 31 H 0.151 0.849 32 H 0.279 0.721 33 H 0.090 0.910 34 H 0.122 0.878 35 H 0.109 0.891 36 H 0.104 0.896 37 H 0.226 0.774 38 H 0.081 0.919 39 H 0.068 0.932 40 H 0.067 0.933 41 H 0.194 0.806 42 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -22.960 4.459 -3.585 23.662 hybrid contribution 2.662 0.540 -0.678 2.799 sum -20.298 4.999 -4.263 21.335 Atomic orbital electron populations 1.23085 0.75384 1.04633 1.02591 1.86239 1.24783 1.24575 1.87592 1.19588 0.88565 0.85368 0.91688 1.20901 0.92970 0.98867 1.11495 1.17827 0.82254 0.93957 0.94954 1.42951 1.04113 1.27975 1.52822 1.20041 0.87660 0.82268 0.79515 1.90759 1.73499 1.34405 1.38381 1.19747 0.87596 0.82396 0.81143 1.90735 1.73986 1.36058 1.42324 1.48723 1.08673 1.27044 1.46721 1.22687 0.97988 0.85716 0.95213 1.22869 0.92361 0.96784 1.03212 1.19762 0.92452 0.88693 0.79710 1.86126 1.55486 1.68781 1.29069 1.21756 0.96748 1.00236 1.40831 0.91452 1.25774 1.01229 0.95420 0.94822 1.69771 1.26952 1.11434 1.47087 0.85532 0.78233 0.78455 0.78971 1.19758 1.20882 1.19553 1.22811 0.75830 1.00937 1.00867 1.22151 0.94683 0.98825 1.08551 1.22934 0.92371 0.94086 0.89960 1.67432 1.40946 0.99142 1.20978 0.86329 0.92188 0.91895 0.84889 0.72114 0.91028 0.87761 0.89054 0.89551 0.77389 0.91911 0.93165 0.93324 0.80569 0.77666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.58 10.38 113.37 1.18 1.75 16 2 O -0.32 -7.76 10.47 -90.06 -0.94 -8.71 16 3 C 0.33 8.02 7.48 84.72 0.63 8.65 16 4 C -0.22 -5.74 8.66 22.60 0.20 -5.55 16 5 C 0.21 4.71 6.32 38.49 0.24 4.96 16 6 N -0.63 -14.87 5.33 -304.37 -1.62 -16.50 16 7 C 0.52 16.11 7.62 87.25 0.66 16.78 16 8 O -0.50 -16.51 11.48 -3.29 -0.04 -16.55 16 9 C 0.51 19.02 7.91 87.24 0.69 19.72 16 10 O -0.55 -22.55 16.81 -3.26 -0.05 -22.60 16 11 N -0.58 -23.54 3.33 -813.47 -2.71 -26.24 16 12 C 0.11 3.84 6.05 86.85 0.53 4.37 16 13 C -0.11 -4.49 6.26 32.08 0.20 -4.29 16 14 C 0.23 11.14 0.85 -10.25 -0.01 11.14 16 15 O -0.59 -29.14 13.08 -148.98 -1.95 -31.09 16 16 C -0.56 -28.58 8.13 25.60 0.21 -28.37 16 17 H 0.07 3.37 7.78 -2.91 -0.02 3.35 16 18 C 0.03 1.47 5.28 84.65 0.45 1.92 16 19 N -0.91 -47.94 10.96 21.45 0.24 -47.71 16 20 Si 0.96 41.05 29.54 68.60 2.03 43.08 16 21 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 22 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 23 H -0.27 -11.31 7.11 99.48 0.71 -10.61 16 24 C 0.12 5.59 5.24 86.73 0.45 6.05 16 25 C -0.22 -3.27 10.05 22.50 0.23 -3.04 16 26 C 0.16 2.30 11.17 84.55 0.94 3.24 16 27 N -0.56 -11.42 9.21 -309.17 -2.85 -14.26 16 28 H 0.12 1.21 8.14 -2.39 -0.02 1.19 16 29 H 0.06 0.90 8.10 -2.39 -0.02 0.88 16 30 H 0.06 0.90 8.10 -2.39 -0.02 0.88 16 31 H 0.13 3.97 6.48 -2.91 -0.02 3.95 16 32 H 0.44 8.50 8.30 -92.71 -0.77 7.73 16 33 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 34 H 0.10 3.47 6.15 -2.38 -0.01 3.46 16 35 H 0.09 3.36 8.14 -2.38 -0.02 3.34 16 36 H 0.09 3.22 8.05 -2.38 -0.02 3.20 16 37 H 0.38 19.27 7.45 -74.05 -0.55 18.72 16 38 H 0.27 13.69 8.31 -92.71 -0.77 12.92 16 39 H 0.05 2.59 7.81 -2.39 -0.02 2.57 16 40 H 0.05 2.52 7.92 -2.38 -0.02 2.50 16 41 H 0.18 1.42 8.06 -2.91 -0.02 1.40 16 42 H 0.21 1.12 8.06 -2.91 -0.02 1.10 16 Total: -1.00 -64.52 357.93 -1.53 -66.05 By element: Atomic # 1 Polarization: 37.44 SS G_CDS: -0.23 Total: 37.21 kcal Atomic # 6 Polarization: 30.72 SS G_CDS: 6.60 Total: 37.32 kcal Atomic # 7 Polarization: -97.77 SS G_CDS: -6.94 Total: -104.71 kcal Atomic # 8 Polarization: -75.97 SS G_CDS: -2.98 Total: -78.95 kcal Atomic # 14 Polarization: 41.05 SS G_CDS: 2.03 Total: 43.08 kcal Total: -64.52 -1.53 -66.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592300181.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.769 kcal (2) G-P(sol) polarization free energy of solvation -64.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds