Wall clock time and date at job start Tue Mar 31 2020 19:11:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35686 * 117.00191 * 2 1 4 4 C 1.38662 * 119.64169 * 179.97438 * 3 2 1 5 5 C 1.39175 * 119.01603 * 180.02562 * 4 3 2 6 6 N 1.39407 * 120.83264 * 180.02562 * 5 4 3 7 7 C 1.34777 * 119.99715 * 147.52263 * 6 5 4 8 8 O 1.21357 * 120.00108 * 354.73464 * 7 6 5 9 9 C 1.49379 * 119.99490 * 174.73400 * 7 6 5 10 10 O 1.21352 * 119.99773 * 0.02562 * 9 7 6 11 11 N 1.34777 * 119.99490 * 180.02562 * 9 7 6 12 12 C 1.47421 * 125.65039 * 359.95722 * 11 9 7 13 13 C 1.54909 * 104.82789 * 204.16346 * 12 11 9 14 14 C 1.55150 * 101.58640 * 322.99145 * 13 12 11 15 15 O 1.42905 * 110.72283 * 277.14106 * 14 13 12 16 16 C 1.50696 * 110.87662 * 153.93849 * 14 13 12 17 17 H 1.08005 * 119.99793 * 2.54298 * 16 14 13 18 18 C 1.37874 * 120.00670 * 182.54991 * 16 14 13 19 19 N 1.31512 * 119.99639 * 359.97438 * 18 16 14 20 20 Si 1.86800 * 120.00434 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.46971 * 0.02562 * 20 18 16 22 22 H 1.48509 * 109.46954 * 119.99698 * 20 18 16 23 23 H 1.48498 * 109.47194 * 240.00107 * 20 18 16 24 24 C 1.47023 * 125.64547 * 180.02562 * 11 9 7 25 25 C 1.39609 * 118.33404 * 0.27344 * 5 4 3 26 26 C 1.37806 * 119.19301 * 359.43603 * 25 5 4 27 27 N 1.32051 * 120.91210 * 0.57986 * 26 25 5 28 28 H 1.09006 * 109.46657 * 60.00431 * 1 2 3 29 29 H 1.09001 * 109.47097 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47174 * 300.00699 * 1 2 3 31 31 H 1.07991 * 120.49446 * 0.02562 * 4 3 2 32 32 H 0.96997 * 119.99817 * 327.51894 * 6 5 4 33 33 H 1.08994 * 110.36833 * 323.00200 * 12 11 9 34 34 H 1.08999 * 110.36156 * 85.32879 * 12 11 9 35 35 H 1.09006 * 111.00219 * 204.91712 * 13 12 11 36 36 H 1.08997 * 111.00560 * 81.07286 * 13 12 11 37 37 H 0.96697 * 114.00329 * 174.97608 * 15 14 13 38 38 H 0.97003 * 119.99936 * 180.02562 * 19 18 16 39 39 H 1.08999 * 109.88221 * 59.48345 * 24 11 9 40 40 H 1.09001 * 109.88216 * 298.32471 * 24 11 9 41 41 H 1.07997 * 120.40382 * 179.73106 * 25 5 4 42 42 H 1.08001 * 119.54500 * 180.27383 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2090 0.0000 4 6 3.4302 1.2728 0.0005 5 6 4.0485 2.5197 0.0011 6 7 5.4383 2.6280 0.0011 7 6 6.0336 3.6623 -0.6252 8 8 5.3677 4.4462 -1.2694 9 6 7.5130 3.8438 -0.5264 10 8 8.1788 3.0597 0.1173 11 7 8.1082 4.8784 -1.1523 12 6 7.4233 5.9003 -1.9647 13 6 8.5132 6.4403 -2.9240 14 6 9.7663 6.4298 -2.0092 15 8 9.8104 7.6057 -1.1984 16 6 11.0262 6.3001 -2.8258 17 1 10.9703 6.2711 -3.9041 18 6 12.2503 6.2184 -2.1967 19 7 12.3185 6.2541 -0.8838 20 14 13.8119 6.0570 -3.2090 21 1 13.4662 6.0408 -4.6531 22 1 14.7057 7.2091 -2.9274 23 1 14.5053 4.7935 -2.8513 24 6 9.5484 5.1740 -1.1392 25 6 3.2419 3.6592 0.0069 26 6 1.8717 3.5129 0.0001 27 7 1.3174 2.3144 -0.0004 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 4.0204 0.3685 0.0005 32 1 5.9769 1.9590 0.4519 33 1 6.6081 5.4507 -2.5314 34 1 7.0474 6.7014 -1.3283 35 1 8.2778 7.4526 -3.2525 36 1 8.6468 5.7754 -3.7773 37 1 10.5317 7.6127 -0.5545 38 1 13.1797 6.1970 -0.4412 39 1 10.1032 4.3333 -1.5557 40 1 9.8775 5.3687 -0.1185 41 1 3.6865 4.6434 0.0119 42 1 1.2424 4.3906 0.0000 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592300182.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:11:43 Heat of formation + Delta-G solvation = -98.882682 kcal Electronic energy + Delta-G solvation = -28489.131315 eV Core-core repulsion = 24242.556612 eV Total energy + Delta-G solvation = -4246.574703 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.136 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.37117 -40.38545 -38.96005 -37.90555 -37.39876 -35.61498 -34.31643 -32.28241 -31.40172 -30.81842 -30.28276 -28.06706 -27.56438 -26.19921 -24.54727 -23.85048 -22.91823 -21.70967 -20.15548 -19.64779 -18.89874 -17.68503 -17.29617 -17.10127 -16.53193 -16.41933 -16.20236 -15.84757 -15.73414 -15.29444 -14.84711 -14.54406 -14.42862 -14.15037 -14.03244 -13.62836 -13.16134 -13.05235 -12.97353 -12.68098 -12.45996 -12.12049 -11.87481 -11.61322 -11.59243 -11.30903 -11.13904 -11.12361 -10.87147 -10.68255 -10.51553 -10.24949 -10.03218 -9.46812 -9.32594 -9.06243 -8.76475 -8.73196 -8.42069 -8.18182 -6.37015 -4.45178 0.71814 0.96864 1.62237 2.16419 2.88748 3.15766 3.24980 3.27636 3.28574 3.55859 3.61394 4.08211 4.20830 4.36450 4.68130 4.83583 4.89946 4.91393 4.98639 5.03383 5.21586 5.32833 5.38769 5.53237 5.72721 5.73403 5.78213 5.81328 5.94068 6.13682 6.29822 6.40340 6.62256 6.68502 6.72344 6.83518 6.95374 7.09403 7.22305 7.52481 7.61586 7.65296 7.80579 7.93175 8.18753 8.58904 9.22315 9.31928 10.71130 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.031061 B = 0.002280 C = 0.002212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.242619 B =12278.238500 C =12657.294156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.308 6.308 3 C 0.338 3.662 4 C -0.220 4.220 5 C 0.230 3.770 6 N -0.649 5.649 7 C 0.516 3.484 8 O -0.487 6.487 9 C 0.509 3.491 10 O -0.532 6.532 11 N -0.570 5.570 12 C 0.096 3.904 13 C -0.120 4.120 14 C 0.248 3.752 15 O -0.583 6.583 16 C -0.536 4.536 17 H 0.069 0.931 18 C 0.070 3.930 19 N -0.896 5.896 20 Si 0.905 3.095 21 H -0.271 1.271 22 H -0.281 1.281 23 H -0.282 1.282 24 C 0.098 3.902 25 C -0.211 4.211 26 C 0.158 3.842 27 N -0.553 5.553 28 H 0.059 0.941 29 H 0.095 0.905 30 H 0.059 0.941 31 H 0.146 0.854 32 H 0.427 0.573 33 H 0.087 0.913 34 H 0.071 0.929 35 H 0.080 0.920 36 H 0.078 0.922 37 H 0.384 0.616 38 H 0.271 0.729 39 H 0.075 0.925 40 H 0.073 0.927 41 H 0.151 0.849 42 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.804 -7.938 2.649 20.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.215 6.215 3 C 0.159 3.841 4 C -0.243 4.243 5 C 0.127 3.873 6 N -0.296 5.296 7 C 0.299 3.701 8 O -0.359 6.359 9 C 0.290 3.710 10 O -0.411 6.411 11 N -0.302 5.302 12 C -0.026 4.026 13 C -0.158 4.158 14 C 0.207 3.793 15 O -0.392 6.392 16 C -0.574 4.574 17 H 0.087 0.913 18 C -0.133 4.133 19 N -0.535 5.535 20 Si 0.732 3.268 21 H -0.195 1.195 22 H -0.207 1.207 23 H -0.207 1.207 24 C -0.023 4.023 25 C -0.234 4.234 26 C 0.003 3.997 27 N -0.278 5.278 28 H 0.078 0.922 29 H 0.113 0.887 30 H 0.078 0.922 31 H 0.164 0.836 32 H 0.266 0.734 33 H 0.105 0.895 34 H 0.089 0.911 35 H 0.099 0.901 36 H 0.096 0.904 37 H 0.235 0.765 38 H 0.081 0.919 39 H 0.093 0.907 40 H 0.091 0.909 41 H 0.168 0.832 42 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -20.045 -7.982 2.338 21.702 hybrid contribution 2.349 -0.484 0.190 2.406 sum -17.696 -8.466 2.529 19.779 Atomic orbital electron populations 1.22858 0.77066 1.02893 1.02561 1.86226 1.23011 1.24437 1.87835 1.19382 0.88473 0.84816 0.91478 1.20645 0.92713 0.97786 1.13200 1.17628 0.82969 0.93187 0.93531 1.43170 1.04631 1.28010 1.53775 1.20735 0.89893 0.80754 0.78758 1.90737 1.65703 1.42166 1.37248 1.19199 0.86713 0.82791 0.82288 1.90761 1.64817 1.43766 1.41735 1.48727 1.11351 1.24061 1.46073 1.22703 0.96013 0.90373 0.93542 1.22822 0.94498 1.01246 0.97272 1.19520 0.92249 0.80921 0.86561 1.86121 1.56400 1.42483 1.54202 1.21542 0.90441 1.51638 0.93794 0.91291 1.25084 0.99722 0.93324 0.95189 1.69641 1.26391 1.49740 1.07697 0.86320 0.82259 0.77834 0.80350 1.19534 1.20695 1.20746 1.23349 0.75334 1.01137 1.02454 1.22052 0.94481 0.99619 1.07245 1.22262 0.92123 0.93588 0.91692 1.67342 1.40827 0.98729 1.20935 0.92221 0.88660 0.92233 0.83592 0.73376 0.89488 0.91062 0.90137 0.90382 0.76521 0.91932 0.90686 0.90878 0.83178 0.81770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.30 10.38 101.05 1.05 1.35 16 2 O -0.31 -3.24 10.47 -18.76 -0.20 -3.43 16 3 C 0.34 3.87 7.48 -17.18 -0.13 3.74 16 4 C -0.22 -2.41 9.99 -39.08 -0.39 -2.80 16 5 C 0.23 2.74 6.32 -83.56 -0.53 2.21 16 6 N -0.65 -8.05 5.33 -10.15 -0.05 -8.10 16 7 C 0.52 7.86 7.62 -11.62 -0.09 7.78 16 8 O -0.49 -7.77 11.48 5.49 0.06 -7.71 16 9 C 0.51 9.35 7.91 -11.62 -0.09 9.26 16 10 O -0.53 -10.74 16.81 5.49 0.09 -10.65 16 11 N -0.57 -11.25 3.33 -171.07 -0.57 -11.82 16 12 C 0.10 1.72 6.05 -2.53 -0.02 1.70 16 13 C -0.12 -2.35 6.23 -24.59 -0.15 -2.50 16 14 C 0.25 5.76 0.85 -89.95 -0.08 5.69 16 15 O -0.58 -14.15 13.07 -35.23 -0.46 -14.61 16 16 C -0.54 -13.51 8.12 -34.44 -0.28 -13.79 16 17 H 0.07 1.72 7.78 -52.48 -0.41 1.31 16 18 C 0.07 1.77 5.28 -17.82 -0.09 1.67 16 19 N -0.90 -22.95 10.98 55.43 0.61 -22.34 16 20 Si 0.91 19.89 29.54 -169.99 -5.02 14.87 16 21 H -0.27 -5.91 7.11 56.52 0.40 -5.50 16 22 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 23 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 24 C 0.10 2.23 5.37 -3.07 -0.02 2.22 16 25 C -0.21 -2.44 8.73 -39.23 -0.34 -2.78 16 26 C 0.16 1.62 11.17 -17.62 -0.20 1.42 16 27 N -0.55 -6.25 9.21 -13.41 -0.12 -6.38 16 28 H 0.06 0.44 8.10 -51.93 -0.42 0.02 16 29 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.43 8.10 -51.93 -0.42 0.01 16 31 H 0.15 1.34 8.06 -52.49 -0.42 0.91 16 32 H 0.43 4.63 8.30 -40.82 -0.34 4.29 16 33 H 0.09 1.45 6.16 -51.93 -0.32 1.13 16 34 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 35 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 36 H 0.08 1.46 8.04 -51.93 -0.42 1.04 16 37 H 0.38 9.52 7.26 45.56 0.33 9.85 16 38 H 0.27 6.65 8.31 -40.82 -0.34 6.31 16 39 H 0.07 1.84 7.82 -51.93 -0.41 1.43 16 40 H 0.07 1.80 7.98 -51.93 -0.41 1.38 16 41 H 0.15 1.80 6.48 -52.49 -0.34 1.46 16 42 H 0.17 1.18 8.06 -52.49 -0.42 0.75 16 LS Contribution 357.91 15.07 5.39 5.39 Total: -1.00 -28.83 357.91 -6.02 -34.85 By element: Atomic # 1 Polarization: 19.15 SS G_CDS: -4.40 Total: 14.75 kcal Atomic # 6 Polarization: 16.52 SS G_CDS: -1.35 Total: 15.16 kcal Atomic # 7 Polarization: -48.49 SS G_CDS: -0.14 Total: -48.63 kcal Atomic # 8 Polarization: -35.89 SS G_CDS: -0.50 Total: -36.39 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -5.02 Total: 14.87 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -28.83 -6.02 -34.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592300182.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.033 kcal (2) G-P(sol) polarization free energy of solvation -28.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds