Wall clock time and date at job start Tue Mar 31 2020 19:11:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35686 * 117.00191 * 2 1 4 4 C 1.38662 * 119.64169 * 179.97438 * 3 2 1 5 5 C 1.39175 * 119.01603 * 180.02562 * 4 3 2 6 6 N 1.39407 * 120.83264 * 180.02562 * 5 4 3 7 7 C 1.34777 * 119.99715 * 147.52263 * 6 5 4 8 8 O 1.21357 * 120.00108 * 354.73464 * 7 6 5 9 9 C 1.49379 * 119.99490 * 174.73400 * 7 6 5 10 10 O 1.21352 * 119.99773 * 0.02562 * 9 7 6 11 11 N 1.34777 * 119.99490 * 180.02562 * 9 7 6 12 12 C 1.47421 * 125.65039 * 359.95722 * 11 9 7 13 13 C 1.54909 * 104.82789 * 204.16346 * 12 11 9 14 14 C 1.55150 * 101.58640 * 322.99145 * 13 12 11 15 15 O 1.42905 * 110.72283 * 277.14106 * 14 13 12 16 16 C 1.50696 * 110.87662 * 153.93849 * 14 13 12 17 17 H 1.08005 * 119.99793 * 2.54298 * 16 14 13 18 18 C 1.37874 * 120.00670 * 182.54991 * 16 14 13 19 19 N 1.31512 * 119.99639 * 359.97438 * 18 16 14 20 20 Si 1.86800 * 120.00434 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.46971 * 0.02562 * 20 18 16 22 22 H 1.48509 * 109.46954 * 119.99698 * 20 18 16 23 23 H 1.48498 * 109.47194 * 240.00107 * 20 18 16 24 24 C 1.47023 * 125.64547 * 180.02562 * 11 9 7 25 25 C 1.39609 * 118.33404 * 0.27344 * 5 4 3 26 26 C 1.37806 * 119.19301 * 359.43603 * 25 5 4 27 27 N 1.32051 * 120.91210 * 0.57986 * 26 25 5 28 28 H 1.09006 * 109.46657 * 60.00431 * 1 2 3 29 29 H 1.09001 * 109.47097 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47174 * 300.00699 * 1 2 3 31 31 H 1.07991 * 120.49446 * 0.02562 * 4 3 2 32 32 H 0.96997 * 119.99817 * 327.51894 * 6 5 4 33 33 H 1.08994 * 110.36833 * 323.00200 * 12 11 9 34 34 H 1.08999 * 110.36156 * 85.32879 * 12 11 9 35 35 H 1.09006 * 111.00219 * 204.91712 * 13 12 11 36 36 H 1.08997 * 111.00560 * 81.07286 * 13 12 11 37 37 H 0.96697 * 114.00329 * 174.97608 * 15 14 13 38 38 H 0.97003 * 119.99936 * 180.02562 * 19 18 16 39 39 H 1.08999 * 109.88221 * 59.48345 * 24 11 9 40 40 H 1.09001 * 109.88216 * 298.32471 * 24 11 9 41 41 H 1.07997 * 120.40382 * 179.73106 * 25 5 4 42 42 H 1.08001 * 119.54500 * 180.27383 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2090 0.0000 4 6 3.4302 1.2728 0.0005 5 6 4.0485 2.5197 0.0011 6 7 5.4383 2.6280 0.0011 7 6 6.0336 3.6623 -0.6252 8 8 5.3677 4.4462 -1.2694 9 6 7.5130 3.8438 -0.5264 10 8 8.1788 3.0597 0.1173 11 7 8.1082 4.8784 -1.1523 12 6 7.4233 5.9003 -1.9647 13 6 8.5132 6.4403 -2.9240 14 6 9.7663 6.4298 -2.0092 15 8 9.8104 7.6057 -1.1984 16 6 11.0262 6.3001 -2.8258 17 1 10.9703 6.2711 -3.9041 18 6 12.2503 6.2184 -2.1967 19 7 12.3185 6.2541 -0.8838 20 14 13.8119 6.0570 -3.2090 21 1 13.4662 6.0408 -4.6531 22 1 14.7057 7.2091 -2.9274 23 1 14.5053 4.7935 -2.8513 24 6 9.5484 5.1740 -1.1392 25 6 3.2419 3.6592 0.0069 26 6 1.8717 3.5129 0.0001 27 7 1.3174 2.3144 -0.0004 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 4.0204 0.3685 0.0005 32 1 5.9769 1.9590 0.4519 33 1 6.6081 5.4507 -2.5314 34 1 7.0474 6.7014 -1.3283 35 1 8.2778 7.4526 -3.2525 36 1 8.6468 5.7754 -3.7773 37 1 10.5317 7.6127 -0.5545 38 1 13.1797 6.1970 -0.4412 39 1 10.1032 4.3333 -1.5557 40 1 9.8775 5.3687 -0.1185 41 1 3.6865 4.6434 0.0119 42 1 1.2424 4.3906 0.0000 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592300182.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:11:42 Heat of formation + Delta-G solvation = -122.142645 kcal Electronic energy + Delta-G solvation = -28490.139943 eV Core-core repulsion = 24242.556612 eV Total energy + Delta-G solvation = -4247.583331 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.136 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.46643 -41.47644 -40.29551 -39.06838 -38.76613 -36.78821 -35.93580 -34.21871 -32.30856 -31.95179 -31.64871 -29.77457 -28.28594 -27.76718 -26.01761 -24.69331 -24.27320 -22.88178 -21.59912 -21.21331 -19.84231 -19.14890 -18.97618 -18.17982 -17.73276 -17.55771 -17.26412 -16.98372 -16.86210 -16.77192 -16.31384 -16.01310 -15.75212 -15.08380 -14.92763 -14.83954 -14.79306 -14.64590 -14.40460 -14.11723 -13.59451 -13.46305 -13.34916 -12.89972 -12.81882 -12.70232 -12.55462 -12.38993 -12.35748 -12.25100 -12.08271 -11.99295 -11.23466 -11.01822 -10.71837 -10.56182 -10.31175 -10.02673 -9.79917 -9.58400 -8.28281 -6.43077 -0.30731 0.12113 0.42945 0.94964 1.40982 1.45078 1.55063 1.91804 2.03352 2.34388 2.40891 2.70637 2.98096 3.04494 3.33756 3.77358 3.81857 4.00486 4.03015 4.04365 4.12138 4.31421 4.39417 4.46949 4.47808 4.59128 4.68140 4.69803 4.81332 4.88380 4.93458 4.97535 5.06737 5.08886 5.30664 5.37197 5.43531 5.72666 5.75354 6.02896 6.18455 6.25386 6.39973 6.63867 6.70617 6.78871 7.27518 7.35789 8.78433 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.031061 B = 0.002280 C = 0.002212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.242619 B =12278.238500 C =12657.294156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.318 6.318 3 C 0.327 3.673 4 C -0.218 4.218 5 C 0.216 3.784 6 N -0.633 5.633 7 C 0.528 3.472 8 O -0.493 6.493 9 C 0.508 3.492 10 O -0.553 6.553 11 N -0.579 5.579 12 C 0.106 3.894 13 C -0.115 4.115 14 C 0.233 3.767 15 O -0.587 6.587 16 C -0.555 4.555 17 H 0.068 0.932 18 C 0.028 3.972 19 N -0.915 5.915 20 Si 0.963 3.037 21 H -0.266 1.266 22 H -0.279 1.279 23 H -0.282 1.282 24 C 0.116 3.884 25 C -0.219 4.219 26 C 0.163 3.837 27 N -0.558 5.558 28 H 0.057 0.943 29 H 0.122 0.878 30 H 0.060 0.940 31 H 0.161 0.839 32 H 0.434 0.566 33 H 0.107 0.893 34 H 0.074 0.926 35 H 0.091 0.909 36 H 0.085 0.915 37 H 0.378 0.622 38 H 0.271 0.729 39 H 0.050 0.950 40 H 0.046 0.954 41 H 0.146 0.854 42 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.571 -8.500 2.039 22.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.225 6.225 3 C 0.149 3.851 4 C -0.241 4.241 5 C 0.113 3.887 6 N -0.281 5.281 7 C 0.310 3.690 8 O -0.365 6.365 9 C 0.290 3.710 10 O -0.433 6.433 11 N -0.311 5.311 12 C -0.015 4.015 13 C -0.153 4.153 14 C 0.193 3.807 15 O -0.395 6.395 16 C -0.593 4.593 17 H 0.086 0.914 18 C -0.173 4.173 19 N -0.554 5.554 20 Si 0.788 3.212 21 H -0.190 1.190 22 H -0.205 1.205 23 H -0.208 1.208 24 C -0.007 4.007 25 C -0.242 4.242 26 C 0.008 3.992 27 N -0.284 5.284 28 H 0.076 0.924 29 H 0.140 0.860 30 H 0.078 0.922 31 H 0.179 0.821 32 H 0.275 0.725 33 H 0.125 0.875 34 H 0.093 0.907 35 H 0.110 0.890 36 H 0.104 0.896 37 H 0.228 0.772 38 H 0.081 0.919 39 H 0.068 0.932 40 H 0.065 0.935 41 H 0.164 0.836 42 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -21.859 -8.571 1.733 23.544 hybrid contribution 2.795 -0.377 0.432 2.853 sum -19.065 -8.948 2.165 21.171 Atomic orbital electron populations 1.23091 0.75478 1.04727 1.02485 1.86219 1.24619 1.24015 1.87625 1.19593 0.88803 0.85263 0.91490 1.20772 0.92881 0.97986 1.12480 1.17736 0.82267 0.93903 0.94779 1.42952 1.05185 1.27045 1.52897 1.19922 0.88037 0.81623 0.79419 1.90733 1.65138 1.42723 1.37929 1.19762 0.88263 0.81770 0.81156 1.90743 1.65921 1.44329 1.42341 1.48712 1.10227 1.25116 1.47031 1.22716 0.95651 0.90062 0.93106 1.22823 0.93034 1.02307 0.97123 1.19718 0.93467 0.80567 0.86950 1.86111 1.56057 1.43168 1.54181 1.21831 0.91612 1.51838 0.94011 0.91417 1.25776 1.02320 0.93137 0.96105 1.69731 1.26883 1.50080 1.08699 0.85426 0.78995 0.77541 0.79197 1.19047 1.20490 1.20818 1.22839 0.77206 1.00135 1.00493 1.22129 0.95134 0.99288 1.07637 1.22725 0.91992 0.94201 0.90315 1.67420 1.41030 0.99037 1.20932 0.92376 0.85975 0.92167 0.82097 0.72530 0.87513 0.90727 0.89019 0.89618 0.77243 0.91920 0.93155 0.93524 0.83623 0.78821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.46 10.38 113.37 1.18 1.64 16 2 O -0.32 -6.09 10.47 -90.05 -0.94 -7.04 16 3 C 0.33 6.92 7.48 84.72 0.63 7.56 16 4 C -0.22 -4.40 9.99 22.60 0.23 -4.18 16 5 C 0.22 4.78 6.32 38.49 0.24 5.02 16 6 N -0.63 -14.87 5.33 -304.37 -1.62 -16.50 16 7 C 0.53 15.47 7.62 87.25 0.66 16.13 16 8 O -0.49 -14.86 11.48 -3.27 -0.04 -14.90 16 9 C 0.51 18.52 7.91 87.25 0.69 19.21 16 10 O -0.55 -22.50 16.81 -3.25 -0.05 -22.56 16 11 N -0.58 -22.81 3.33 -813.49 -2.71 -25.52 16 12 C 0.11 3.67 6.05 86.86 0.53 4.20 16 13 C -0.12 -4.38 6.23 31.98 0.20 -4.18 16 14 C 0.23 10.94 0.85 -10.36 -0.01 10.93 16 15 O -0.59 -28.84 13.07 -148.98 -1.95 -30.79 16 16 C -0.55 -28.16 8.12 25.60 0.21 -27.96 16 17 H 0.07 3.37 7.78 -2.91 -0.02 3.35 16 18 C 0.03 1.40 5.28 84.65 0.45 1.85 16 19 N -0.91 -47.76 10.98 21.45 0.24 -47.53 16 20 Si 0.96 40.89 29.54 68.60 2.03 42.91 16 21 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 22 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 23 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 24 C 0.12 5.40 5.37 86.73 0.47 5.87 16 25 C -0.22 -4.67 8.73 22.50 0.20 -4.47 16 26 C 0.16 2.96 11.17 84.56 0.94 3.90 16 27 N -0.56 -11.50 9.21 -309.17 -2.85 -14.35 16 28 H 0.06 0.75 8.10 -2.38 -0.02 0.74 16 29 H 0.12 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.06 0.75 8.10 -2.39 -0.02 0.73 16 31 H 0.16 2.65 8.06 -2.92 -0.02 2.62 16 32 H 0.43 8.91 8.30 -92.71 -0.77 8.14 16 33 H 0.11 3.32 6.16 -2.39 -0.01 3.30 16 34 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 35 H 0.09 3.26 8.14 -2.38 -0.02 3.24 16 36 H 0.09 3.10 8.04 -2.39 -0.02 3.08 16 37 H 0.38 19.27 7.26 -74.06 -0.54 18.73 16 38 H 0.27 13.55 8.31 -92.71 -0.77 12.77 16 39 H 0.05 2.55 7.82 -2.39 -0.02 2.53 16 40 H 0.05 2.39 7.98 -2.39 -0.02 2.37 16 41 H 0.15 3.26 6.48 -2.91 -0.02 3.24 16 42 H 0.20 2.21 8.06 -2.91 -0.02 2.18 16 Total: -1.00 -61.35 357.91 -1.50 -62.85 By element: Atomic # 1 Polarization: 38.09 SS G_CDS: -0.21 Total: 37.87 kcal Atomic # 6 Polarization: 28.92 SS G_CDS: 6.61 Total: 35.53 kcal Atomic # 7 Polarization: -96.95 SS G_CDS: -6.94 Total: -103.89 kcal Atomic # 8 Polarization: -72.30 SS G_CDS: -2.98 Total: -75.28 kcal Atomic # 14 Polarization: 40.89 SS G_CDS: 2.03 Total: 42.91 kcal Total: -61.35 -1.50 -62.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592300182.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.292 kcal (2) G-P(sol) polarization free energy of solvation -61.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds