Wall clock time and date at job start Tue Mar 31 2020 19:11:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35725 * 116.99822 * 2 1 4 4 N 1.32152 * 119.73296 * 0.02562 * 3 2 1 5 5 C 1.31992 * 121.72310 * 179.97438 * 4 3 2 6 6 C 1.38107 * 120.99152 * 0.02562 * 5 4 3 7 7 C 1.38711 * 119.35207 * 359.73824 * 6 5 4 8 8 C 1.39031 * 118.41956 * 0.50141 * 7 6 5 9 9 N 1.39879 * 120.50877 * 179.78047 * 8 7 6 10 10 C 1.34771 * 120.00315 * 34.15680 * 9 8 7 11 11 O 1.21395 * 120.00298 * 355.76067 * 10 9 8 12 12 C 1.49338 * 120.00183 * 175.76192 * 10 9 8 13 13 O 1.21358 * 119.99754 * 359.97438 * 12 10 9 14 14 N 1.34778 * 119.99955 * 179.97438 * 12 10 9 15 15 C 1.47017 * 125.64856 * 0.02562 * 14 12 10 16 16 C 1.54322 * 107.27193 * 181.03871 * 15 14 12 17 17 C 1.55162 * 102.94341 * 22.19242 * 16 15 14 18 18 O 1.42898 * 111.00396 * 82.56969 * 17 16 15 19 19 C 1.50695 * 111.00575 * 206.42684 * 17 16 15 20 20 H 1.08000 * 119.99915 * 353.64747 * 19 17 16 21 21 C 1.37879 * 120.00250 * 173.64800 * 19 17 16 22 22 N 1.31517 * 119.99656 * 0.02562 * 21 19 17 23 23 Si 1.86795 * 120.00334 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.46931 * 0.02562 * 23 21 19 25 25 H 1.48494 * 109.47153 * 120.00126 * 23 21 19 26 26 H 1.48505 * 109.47005 * 240.00401 * 23 21 19 27 27 C 1.47424 * 125.64894 * 179.97438 * 14 12 10 28 28 H 1.09006 * 109.47158 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47113 * 299.99310 * 1 2 3 30 30 H 1.08999 * 109.47316 * 60.00146 * 1 2 3 31 31 H 1.07998 * 119.50433 * 179.97438 * 5 4 3 32 32 H 1.07997 * 120.32377 * 180.02562 * 6 5 4 33 33 H 1.07998 * 120.78312 * 180.26106 * 7 6 5 34 34 H 0.97003 * 120.00029 * 214.15052 * 9 8 7 35 35 H 1.09000 * 109.88461 * 300.45341 * 15 14 12 36 36 H 1.08998 * 109.88523 * 61.46495 * 15 14 12 37 37 H 1.08996 * 110.72528 * 140.55673 * 16 15 14 38 38 H 1.09004 * 110.71980 * 263.82887 * 16 15 14 39 39 H 0.96695 * 113.99840 * 186.34727 * 18 17 16 40 40 H 0.96994 * 120.00051 * 180.02562 * 22 21 19 41 41 H 1.09002 * 110.36928 * 274.73660 * 27 14 12 42 42 H 1.09003 * 110.36258 * 37.05185 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2093 0.0000 4 7 1.3202 2.3143 0.0005 5 6 1.8782 3.5104 0.0010 6 6 3.2517 3.6544 0.0005 7 6 4.0539 2.5228 0.0050 8 6 3.4392 1.2758 -0.0009 9 7 4.2061 0.1060 -0.0013 10 6 5.3808 0.0701 0.6583 11 8 5.8106 1.0743 1.1879 12 6 6.1539 -1.2052 0.7376 13 8 5.7241 -2.2092 0.2085 14 7 7.3289 -1.2410 1.3968 15 6 7.9629 -0.1042 2.0804 16 6 9.2984 -0.6088 2.6664 17 6 9.6102 -1.8557 1.7973 18 8 10.2307 -1.4799 0.5661 19 6 10.4655 -2.8403 2.5523 20 1 10.8597 -2.5796 3.5234 21 6 10.7449 -4.0738 2.0034 22 7 10.2653 -4.3910 0.8206 23 14 11.8057 -5.2939 2.9389 24 1 12.2178 -4.6990 4.2357 25 1 11.0296 -6.5350 3.1886 26 1 13.0126 -5.6177 2.1365 27 6 8.1909 -2.4268 1.5527 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5137 0.8901 30 1 -0.3634 0.5138 -0.8900 31 1 1.2512 4.3898 0.0010 32 1 3.6968 4.6384 0.0014 33 1 5.1305 2.6086 0.0089 34 1 3.8924 -0.6794 -0.4763 35 1 8.1507 0.6990 1.3679 36 1 7.3161 0.2545 2.8811 37 1 10.0781 0.1445 2.5538 38 1 9.1791 -0.8883 3.7132 39 1 10.3562 -2.2135 -0.0511 40 1 10.4615 -5.2589 0.4345 41 1 7.8680 -3.0207 2.4078 42 1 8.1756 -3.0289 0.6442 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592304376.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:11:46 Heat of formation + Delta-G solvation = -98.816141 kcal Electronic energy + Delta-G solvation = -28957.017717 eV Core-core repulsion = 24710.445899 eV Total energy + Delta-G solvation = -4246.571818 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.136 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.36269 -40.21067 -38.67198 -37.98985 -37.27402 -35.43553 -34.19664 -32.28519 -32.01940 -30.31386 -30.19395 -27.97608 -27.50768 -26.10232 -24.61623 -23.38459 -23.01915 -21.69756 -19.93224 -19.64044 -18.64045 -18.08010 -17.26964 -17.19046 -16.82188 -16.36624 -16.04957 -15.73317 -15.29828 -15.18839 -14.65915 -14.58047 -14.38597 -14.13455 -13.69404 -13.51601 -13.10735 -13.07432 -12.90314 -12.73709 -12.33599 -12.03266 -11.70985 -11.58398 -11.48112 -11.21206 -11.11474 -11.09559 -10.84254 -10.62200 -10.48852 -10.24441 -10.12330 -9.60783 -9.42447 -9.19773 -8.74690 -8.46517 -8.24967 -7.97091 -6.33160 -4.42612 0.72607 1.03402 1.69004 2.42056 2.77693 3.17354 3.26608 3.30002 3.37908 3.59045 3.70255 4.10820 4.23142 4.50645 4.63555 4.78888 4.93594 4.94858 5.05649 5.07831 5.14836 5.38895 5.43135 5.62708 5.73799 5.77320 5.85966 5.97259 6.01062 6.22293 6.31249 6.46471 6.68403 6.70781 6.78923 6.92482 7.01843 7.14231 7.26547 7.53227 7.68861 7.69518 7.92834 7.96264 8.31628 8.62013 9.24325 9.32966 10.74119 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.024943 B = 0.002626 C = 0.002459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.307984 B =10659.229192 C =11383.327156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 O -0.307 6.307 3 C 0.303 3.697 4 N -0.523 5.523 5 C 0.118 3.882 6 C -0.188 4.188 7 C -0.048 4.048 8 C 0.083 3.917 9 N -0.637 5.637 10 C 0.512 3.488 11 O -0.501 6.501 12 C 0.511 3.489 13 O -0.532 6.532 14 N -0.571 5.571 15 C 0.109 3.891 16 C -0.121 4.121 17 C 0.248 3.752 18 O -0.581 6.581 19 C -0.536 4.536 20 H 0.069 0.931 21 C 0.071 3.929 22 N -0.893 5.893 23 Si 0.905 3.095 24 H -0.271 1.271 25 H -0.282 1.282 26 H -0.281 1.281 27 C 0.091 3.909 28 H 0.097 0.903 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.161 0.839 32 H 0.142 0.858 33 H 0.160 0.840 34 H 0.427 0.573 35 H 0.071 0.929 36 H 0.065 0.935 37 H 0.077 0.923 38 H 0.079 0.921 39 H 0.381 0.619 40 H 0.270 0.730 41 H 0.069 0.931 42 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.862 12.509 -2.025 20.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 O -0.214 6.214 3 C 0.121 3.879 4 N -0.247 5.247 5 C -0.037 4.037 6 C -0.209 4.209 7 C -0.075 4.075 8 C -0.014 4.014 9 N -0.285 5.285 10 C 0.295 3.705 11 O -0.375 6.375 12 C 0.293 3.707 13 O -0.410 6.410 14 N -0.303 5.303 15 C -0.013 4.013 16 C -0.159 4.159 17 C 0.208 3.792 18 O -0.389 6.389 19 C -0.574 4.574 20 H 0.087 0.913 21 C -0.133 4.133 22 N -0.532 5.532 23 Si 0.732 3.268 24 H -0.195 1.195 25 H -0.208 1.208 26 H -0.207 1.207 27 C -0.029 4.029 28 H 0.115 0.885 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.179 0.821 32 H 0.160 0.840 33 H 0.177 0.823 34 H 0.266 0.734 35 H 0.089 0.911 36 H 0.084 0.916 37 H 0.096 0.904 38 H 0.097 0.903 39 H 0.231 0.769 40 H 0.080 0.920 41 H 0.087 0.913 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -16.605 12.726 -1.774 20.996 hybrid contribution 0.895 -1.461 -0.037 1.714 sum -15.710 11.265 -1.811 19.416 Atomic orbital electron populations 1.22870 0.76850 1.03132 1.02394 1.86246 1.23205 1.24000 1.87904 1.19641 0.87544 0.85576 0.95178 1.67336 1.39810 0.98509 1.19056 1.22386 0.93057 0.93475 0.94803 1.21957 0.94394 0.99683 1.04855 1.21718 1.02331 0.89446 0.94007 1.17746 0.87460 0.87933 1.08300 1.42963 1.19969 1.14307 1.51267 1.20679 0.81464 0.90073 0.78245 1.90715 1.67341 1.35314 1.44107 1.19227 0.82162 0.87842 0.81512 1.90757 1.68439 1.35093 1.46729 1.48671 1.18175 1.14702 1.48769 1.22184 0.94493 0.88391 0.96267 1.22708 0.94679 0.99077 0.99423 1.19651 0.87157 0.89637 0.82778 1.86129 1.82803 1.40147 1.29850 1.21491 1.32148 0.99086 1.04706 0.91297 1.25095 0.95090 0.98144 0.94965 1.69712 1.44439 1.22972 1.16061 0.86328 0.79976 0.80550 0.79942 1.19550 1.20776 1.20726 1.23551 0.90641 0.85809 1.02903 0.88453 0.92263 0.92248 0.82137 0.83973 0.82294 0.73408 0.91090 0.91648 0.90447 0.90279 0.76906 0.91987 0.91255 0.88956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.36 10.38 101.05 1.05 1.41 16 2 O -0.31 -3.70 10.05 -18.88 -0.19 -3.89 16 3 C 0.30 3.82 7.51 -16.92 -0.13 3.70 16 4 N -0.52 -5.94 9.21 -13.15 -0.12 -6.07 16 5 C 0.12 1.07 11.17 -17.53 -0.20 0.87 16 6 C -0.19 -1.72 10.10 -39.45 -0.40 -2.12 16 7 C -0.05 -0.57 8.81 -39.11 -0.34 -0.91 16 8 C 0.08 1.10 6.35 -83.40 -0.53 0.57 16 9 N -0.64 -9.17 5.18 -10.08 -0.05 -9.22 16 10 C 0.51 8.56 7.71 -11.64 -0.09 8.47 16 11 O -0.50 -8.52 11.56 5.46 0.06 -8.46 16 12 C 0.51 10.06 7.91 -11.64 -0.09 9.97 16 13 O -0.53 -11.47 16.74 5.49 0.09 -11.37 16 14 N -0.57 -11.76 3.33 -171.06 -0.57 -12.33 16 15 C 0.11 2.03 5.49 -3.07 -0.02 2.01 16 16 C -0.12 -2.39 6.13 -24.90 -0.15 -2.54 16 17 C 0.25 5.86 0.87 -89.61 -0.08 5.78 16 18 O -0.58 -14.41 13.16 -35.23 -0.46 -14.87 16 19 C -0.54 -13.57 8.27 -34.44 -0.28 -13.86 16 20 H 0.07 1.72 7.79 -52.49 -0.41 1.31 16 21 C 0.07 1.79 5.29 -17.82 -0.09 1.69 16 22 N -0.89 -23.14 10.69 55.43 0.59 -22.55 16 23 Si 0.90 19.94 29.54 -169.99 -5.02 14.92 16 24 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 25 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 26 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 27 C 0.09 2.12 5.39 -2.52 -0.01 2.11 16 28 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.06 0.49 8.11 -51.93 -0.42 0.07 16 30 H 0.06 0.47 8.11 -51.93 -0.42 0.05 16 31 H 0.16 0.90 8.06 -52.49 -0.42 0.48 16 32 H 0.14 0.89 8.06 -52.49 -0.42 0.47 16 33 H 0.16 2.00 6.27 -52.49 -0.33 1.67 16 34 H 0.43 5.85 8.05 -40.82 -0.33 5.52 16 35 H 0.07 1.31 7.58 -51.93 -0.39 0.91 16 36 H 0.07 1.12 7.68 -51.93 -0.40 0.72 16 37 H 0.08 1.47 8.14 -51.93 -0.42 1.04 16 38 H 0.08 1.47 8.03 -51.93 -0.42 1.05 16 39 H 0.38 9.65 7.57 45.56 0.34 10.00 16 40 H 0.27 6.72 8.31 -40.82 -0.34 6.38 16 41 H 0.07 1.65 8.03 -51.93 -0.42 1.23 16 42 H 0.09 2.37 7.33 -51.93 -0.38 1.99 16 LS Contribution 357.41 15.07 5.39 5.39 Total: -1.00 -29.32 357.41 -6.05 -35.37 By element: Atomic # 1 Polarization: 20.33 SS G_CDS: -4.40 Total: 15.93 kcal Atomic # 6 Polarization: 18.53 SS G_CDS: -1.37 Total: 17.16 kcal Atomic # 7 Polarization: -50.02 SS G_CDS: -0.15 Total: -50.17 kcal Atomic # 8 Polarization: -38.10 SS G_CDS: -0.50 Total: -38.60 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -5.02 Total: 14.92 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -29.32 -6.05 -35.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592304376.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.446 kcal (2) G-P(sol) polarization free energy of solvation -29.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds