Wall clock time and date at job start Tue Mar 31 2020 19:11:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35725 * 116.99822 * 2 1 4 4 N 1.32152 * 119.73296 * 0.02562 * 3 2 1 5 5 C 1.31992 * 121.72310 * 179.97438 * 4 3 2 6 6 C 1.38107 * 120.99152 * 0.02562 * 5 4 3 7 7 C 1.38711 * 119.35207 * 359.73824 * 6 5 4 8 8 C 1.39031 * 118.41956 * 0.50141 * 7 6 5 9 9 N 1.39879 * 120.50877 * 179.78047 * 8 7 6 10 10 C 1.34771 * 120.00315 * 34.15680 * 9 8 7 11 11 O 1.21395 * 120.00298 * 355.76067 * 10 9 8 12 12 C 1.49338 * 120.00183 * 175.76192 * 10 9 8 13 13 O 1.21358 * 119.99754 * 359.97438 * 12 10 9 14 14 N 1.34778 * 119.99955 * 179.97438 * 12 10 9 15 15 C 1.47017 * 125.64856 * 0.02562 * 14 12 10 16 16 C 1.54322 * 107.27193 * 181.03871 * 15 14 12 17 17 C 1.55162 * 102.94341 * 22.19242 * 16 15 14 18 18 O 1.42898 * 111.00396 * 82.56969 * 17 16 15 19 19 C 1.50695 * 111.00575 * 206.42684 * 17 16 15 20 20 H 1.08000 * 119.99915 * 353.64747 * 19 17 16 21 21 C 1.37879 * 120.00250 * 173.64800 * 19 17 16 22 22 N 1.31517 * 119.99656 * 0.02562 * 21 19 17 23 23 Si 1.86795 * 120.00334 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.46931 * 0.02562 * 23 21 19 25 25 H 1.48494 * 109.47153 * 120.00126 * 23 21 19 26 26 H 1.48505 * 109.47005 * 240.00401 * 23 21 19 27 27 C 1.47424 * 125.64894 * 179.97438 * 14 12 10 28 28 H 1.09006 * 109.47158 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47113 * 299.99310 * 1 2 3 30 30 H 1.08999 * 109.47316 * 60.00146 * 1 2 3 31 31 H 1.07998 * 119.50433 * 179.97438 * 5 4 3 32 32 H 1.07997 * 120.32377 * 180.02562 * 6 5 4 33 33 H 1.07998 * 120.78312 * 180.26106 * 7 6 5 34 34 H 0.97003 * 120.00029 * 214.15052 * 9 8 7 35 35 H 1.09000 * 109.88461 * 300.45341 * 15 14 12 36 36 H 1.08998 * 109.88523 * 61.46495 * 15 14 12 37 37 H 1.08996 * 110.72528 * 140.55673 * 16 15 14 38 38 H 1.09004 * 110.71980 * 263.82887 * 16 15 14 39 39 H 0.96695 * 113.99840 * 186.34727 * 18 17 16 40 40 H 0.96994 * 120.00051 * 180.02562 * 22 21 19 41 41 H 1.09002 * 110.36928 * 274.73660 * 27 14 12 42 42 H 1.09003 * 110.36258 * 37.05185 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2093 0.0000 4 7 1.3202 2.3143 0.0005 5 6 1.8782 3.5104 0.0010 6 6 3.2517 3.6544 0.0005 7 6 4.0539 2.5228 0.0050 8 6 3.4392 1.2758 -0.0009 9 7 4.2061 0.1060 -0.0013 10 6 5.3808 0.0701 0.6583 11 8 5.8106 1.0743 1.1879 12 6 6.1539 -1.2052 0.7376 13 8 5.7241 -2.2092 0.2085 14 7 7.3289 -1.2410 1.3968 15 6 7.9629 -0.1042 2.0804 16 6 9.2984 -0.6088 2.6664 17 6 9.6102 -1.8557 1.7973 18 8 10.2307 -1.4799 0.5661 19 6 10.4655 -2.8403 2.5523 20 1 10.8597 -2.5796 3.5234 21 6 10.7449 -4.0738 2.0034 22 7 10.2653 -4.3910 0.8206 23 14 11.8057 -5.2939 2.9389 24 1 12.2178 -4.6990 4.2357 25 1 11.0296 -6.5350 3.1886 26 1 13.0126 -5.6177 2.1365 27 6 8.1909 -2.4268 1.5527 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5137 0.8901 30 1 -0.3634 0.5138 -0.8900 31 1 1.2512 4.3898 0.0010 32 1 3.6968 4.6384 0.0014 33 1 5.1305 2.6086 0.0089 34 1 3.8924 -0.6794 -0.4763 35 1 8.1507 0.6990 1.3679 36 1 7.3161 0.2545 2.8811 37 1 10.0781 0.1445 2.5538 38 1 9.1791 -0.8883 3.7132 39 1 10.3562 -2.2135 -0.0511 40 1 10.4615 -5.2589 0.4345 41 1 7.8680 -3.0207 2.4078 42 1 8.1756 -3.0289 0.6442 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592304376.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:11:46 Heat of formation + Delta-G solvation = -122.787541 kcal Electronic energy + Delta-G solvation = -28958.057195 eV Core-core repulsion = 24710.445899 eV Total energy + Delta-G solvation = -4247.611296 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.136 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.44510 -41.45162 -40.09606 -39.00754 -38.79218 -36.71191 -35.85041 -34.24308 -32.88108 -31.98645 -31.12634 -29.71382 -28.25642 -27.74912 -26.04595 -24.52168 -24.07991 -23.02308 -21.57335 -21.09704 -19.61495 -19.27164 -19.04564 -18.45568 -17.94334 -17.64914 -17.23854 -17.04880 -16.99390 -16.27449 -16.13556 -15.92260 -15.81468 -15.14116 -14.91228 -14.68563 -14.68337 -14.50550 -14.32739 -13.97466 -13.56457 -13.50226 -13.33564 -12.86993 -12.73330 -12.70286 -12.55534 -12.37613 -12.24237 -12.20708 -12.15486 -12.06828 -11.22966 -11.09685 -10.73454 -10.61377 -10.38656 -10.32840 -9.69954 -9.16091 -8.25655 -6.42102 -0.25098 0.19364 0.38906 1.08433 1.42432 1.46323 1.56602 1.95849 2.00217 2.30775 2.41155 2.71102 3.00555 3.10631 3.36756 3.75830 3.78954 4.01842 4.04649 4.09151 4.13336 4.31357 4.38370 4.43511 4.43609 4.64145 4.71002 4.75488 4.79596 4.95688 5.04434 5.05330 5.11754 5.15447 5.32461 5.43543 5.45428 5.74470 5.76853 6.04809 6.12582 6.27714 6.46817 6.66365 6.72587 6.77901 7.26493 7.34773 8.80122 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.024943 B = 0.002626 C = 0.002459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.307984 B =10659.229192 C =11383.327156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.325 6.325 3 C 0.294 3.706 4 N -0.532 5.532 5 C 0.127 3.873 6 C -0.179 4.179 7 C -0.056 4.056 8 C 0.051 3.949 9 N -0.625 5.625 10 C 0.521 3.479 11 O -0.505 6.505 12 C 0.507 3.493 13 O -0.557 6.557 14 N -0.578 5.578 15 C 0.116 3.884 16 C -0.114 4.114 17 C 0.233 3.767 18 O -0.586 6.586 19 C -0.553 4.553 20 H 0.070 0.930 21 C 0.028 3.972 22 N -0.914 5.914 23 Si 0.965 3.035 24 H -0.265 1.265 25 H -0.282 1.282 26 H -0.281 1.281 27 C 0.105 3.895 28 H 0.117 0.883 29 H 0.059 0.941 30 H 0.064 0.936 31 H 0.202 0.798 32 H 0.176 0.824 33 H 0.151 0.849 34 H 0.428 0.572 35 H 0.075 0.925 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.092 0.908 39 H 0.374 0.626 40 H 0.270 0.730 41 H 0.057 0.943 42 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.978 14.653 -1.297 22.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.232 6.232 3 C 0.113 3.887 4 N -0.256 5.256 5 C -0.028 4.028 6 C -0.199 4.199 7 C -0.083 4.083 8 C -0.045 4.045 9 N -0.272 5.272 10 C 0.303 3.697 11 O -0.380 6.380 12 C 0.290 3.710 13 O -0.437 6.437 14 N -0.310 5.310 15 C -0.005 4.005 16 C -0.152 4.152 17 C 0.193 3.807 18 O -0.394 6.394 19 C -0.591 4.591 20 H 0.088 0.912 21 C -0.174 4.174 22 N -0.553 5.553 23 Si 0.790 3.210 24 H -0.189 1.189 25 H -0.208 1.208 26 H -0.207 1.207 27 C -0.017 4.017 28 H 0.135 0.865 29 H 0.078 0.922 30 H 0.083 0.917 31 H 0.218 0.782 32 H 0.194 0.806 33 H 0.168 0.832 34 H 0.266 0.734 35 H 0.093 0.907 36 H 0.104 0.896 37 H 0.105 0.895 38 H 0.110 0.890 39 H 0.223 0.777 40 H 0.079 0.921 41 H 0.076 0.924 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -17.756 14.905 -1.045 23.206 hybrid contribution 1.118 -2.034 -0.315 2.342 sum -16.637 12.871 -1.360 21.079 Atomic orbital electron populations 1.23080 0.75236 1.04608 1.02633 1.86222 1.24917 1.24208 1.87864 1.19724 0.87400 0.86194 0.95387 1.67451 1.39840 0.98927 1.19402 1.23139 0.93684 0.93836 0.92183 1.22321 0.94302 1.00175 1.03074 1.21824 1.02328 0.89966 0.94190 1.17953 0.87845 0.87700 1.11044 1.42786 1.19111 1.15056 1.50274 1.19932 0.82092 0.88587 0.79088 1.90705 1.67716 1.34738 1.44812 1.19820 0.81883 0.88855 0.80490 1.90731 1.69018 1.36467 1.47506 1.48685 1.18463 1.14406 1.49456 1.22228 0.94087 0.87531 0.96696 1.22717 0.95525 0.97567 0.99410 1.19868 0.86773 0.91439 0.82635 1.86122 1.83065 1.39906 1.30301 1.21777 1.32598 0.99787 1.04967 0.91182 1.25806 0.96137 0.99706 0.95703 1.69821 1.45170 1.23223 1.17099 0.85401 0.78292 0.78366 0.78933 1.18884 1.20810 1.20687 1.23120 0.91474 0.86388 1.00694 0.86473 0.92191 0.91737 0.78154 0.80618 0.83182 0.73350 0.90703 0.89592 0.89450 0.88953 0.77694 0.92061 0.92445 0.92169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.62 10.38 113.37 1.18 1.79 16 2 O -0.32 -7.66 10.05 -90.47 -0.91 -8.57 16 3 C 0.29 7.13 7.51 84.97 0.64 7.77 16 4 N -0.53 -10.90 9.21 -308.42 -2.84 -13.74 16 5 C 0.13 1.84 11.17 84.64 0.95 2.79 16 6 C -0.18 -2.68 10.10 22.35 0.23 -2.45 16 7 C -0.06 -1.24 8.81 22.57 0.20 -1.04 16 8 C 0.05 1.32 6.35 38.37 0.24 1.56 16 9 N -0.63 -18.05 5.18 -304.16 -1.58 -19.63 16 10 C 0.52 17.39 7.71 87.24 0.67 18.07 16 11 O -0.51 -16.76 11.56 -3.39 -0.04 -16.80 16 12 C 0.51 20.31 7.91 87.23 0.69 21.00 16 13 O -0.56 -24.85 16.74 -3.27 -0.05 -24.91 16 14 N -0.58 -24.08 3.33 -813.48 -2.71 -26.78 16 15 C 0.12 4.21 5.49 86.73 0.48 4.68 16 16 C -0.11 -4.42 6.13 31.78 0.19 -4.22 16 17 C 0.23 11.11 0.87 -10.14 -0.01 11.10 16 18 O -0.59 -29.61 13.16 -148.98 -1.96 -31.57 16 19 C -0.55 -28.14 8.27 25.60 0.21 -27.93 16 20 H 0.07 3.47 7.79 -2.91 -0.02 3.44 16 21 C 0.03 1.41 5.29 84.65 0.45 1.86 16 22 N -0.91 -48.48 10.69 21.45 0.23 -48.25 16 23 Si 0.96 41.00 29.54 68.60 2.03 43.03 16 24 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 25 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 26 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 27 C 0.11 5.03 5.39 86.86 0.47 5.50 16 28 H 0.12 1.33 8.14 -2.38 -0.02 1.31 16 29 H 0.06 0.93 8.11 -2.38 -0.02 0.91 16 30 H 0.06 0.94 8.11 -2.39 -0.02 0.92 16 31 H 0.20 1.23 8.06 -2.91 -0.02 1.20 16 32 H 0.18 1.41 8.06 -2.91 -0.02 1.39 16 33 H 0.15 3.60 6.27 -2.91 -0.02 3.58 16 34 H 0.43 12.01 8.05 -92.71 -0.75 11.26 16 35 H 0.07 2.66 7.58 -2.39 -0.02 2.65 16 36 H 0.09 2.78 7.68 -2.39 -0.02 2.76 16 37 H 0.09 3.18 8.14 -2.39 -0.02 3.16 16 38 H 0.09 3.29 8.03 -2.38 -0.02 3.27 16 39 H 0.37 19.63 7.57 -74.06 -0.56 19.07 16 40 H 0.27 13.73 8.31 -92.71 -0.77 12.96 16 41 H 0.06 2.82 8.03 -2.39 -0.02 2.80 16 42 H 0.06 3.24 7.33 -2.39 -0.02 3.23 16 Total: -1.00 -63.92 357.41 -1.47 -65.39 By element: Atomic # 1 Polarization: 41.57 SS G_CDS: -0.21 Total: 41.36 kcal Atomic # 6 Polarization: 33.89 SS G_CDS: 6.58 Total: 40.47 kcal Atomic # 7 Polarization: -101.51 SS G_CDS: -6.90 Total: -108.40 kcal Atomic # 8 Polarization: -78.87 SS G_CDS: -2.96 Total: -81.84 kcal Atomic # 14 Polarization: 41.00 SS G_CDS: 2.03 Total: 43.03 kcal Total: -63.92 -1.47 -65.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592304376.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.401 kcal (2) G-P(sol) polarization free energy of solvation -63.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds