Wall clock time and date at job start Tue Mar 31 2020 18:43:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34230 * 116.99903 * 2 1 4 4 O 1.20828 * 120.00000 * 0.02562 * 3 2 1 5 5 C 1.50702 * 119.99872 * 179.97438 * 3 2 1 6 6 H 1.09005 * 109.39409 * 93.56272 * 5 3 2 7 7 C 1.54252 * 109.19706 * 333.87868 * 5 3 2 8 8 N 1.41449 * 109.95901 * 170.19312 * 7 5 3 9 9 C 1.46198 * 116.34329 * 63.42044 * 8 7 5 10 10 C 1.51277 * 109.09185 * 272.96085 * 9 8 7 11 11 C 1.53792 * 109.62878 * 92.41268 * 10 9 8 12 12 N 1.44884 * 109.43375 * 213.45356 * 5 3 2 13 13 S 1.65589 * 118.74985 * 29.81049 * 12 5 3 14 14 O 1.42105 * 106.40371 * 233.77356 * 13 12 5 15 15 O 1.42101 * 106.40390 * 6.69290 * 13 12 5 16 16 N 1.65599 * 107.21902 * 120.23361 * 13 12 5 17 17 C 1.46500 * 119.99901 * 274.85485 * 16 13 12 18 18 C 1.46499 * 120.00149 * 94.85712 * 16 13 12 19 19 C 1.50700 * 109.47326 * 94.97410 * 18 16 13 20 20 H 1.08002 * 120.00036 * 0.02562 * 19 18 16 21 21 C 1.37877 * 120.00503 * 179.97438 * 19 18 16 22 22 N 1.31521 * 119.99253 * 0.02562 * 21 19 18 23 23 Si 1.86794 * 120.00485 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47288 * 90.00345 * 23 21 19 25 25 H 1.48498 * 109.47450 * 210.00363 * 23 21 19 26 26 H 1.48502 * 109.47087 * 330.00385 * 23 21 19 27 27 H 1.09005 * 109.47072 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.46842 * 299.99771 * 1 2 3 29 29 H 1.09000 * 109.47040 * 60.00140 * 1 2 3 30 30 H 1.09000 * 109.45477 * 50.00975 * 7 5 3 31 31 H 1.09000 * 109.25674 * 290.25812 * 7 5 3 32 32 H 1.00896 * 111.00052 * 295.21854 * 8 7 5 33 33 H 1.08994 * 109.53411 * 153.08081 * 9 8 7 34 34 H 1.08995 * 109.59822 * 32.88071 * 9 8 7 35 35 H 1.09005 * 109.44495 * 332.36526 * 10 9 8 36 36 H 1.09002 * 109.44513 * 212.46167 * 10 9 8 37 37 H 1.09004 * 109.11266 * 199.49428 * 11 10 9 38 38 H 1.08995 * 109.11611 * 80.43207 * 11 10 9 39 39 H 1.08996 * 109.47137 * 90.00051 * 17 16 13 40 40 H 1.09005 * 109.46929 * 209.99908 * 17 16 13 41 41 H 1.09000 * 109.47413 * 330.00093 * 17 16 13 42 42 H 1.08998 * 109.47309 * 214.97459 * 18 16 13 43 43 H 1.09003 * 109.47089 * 334.97397 * 18 16 13 44 44 H 0.97006 * 119.99318 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9249 1.3574 -1.0255 7 6 4.1411 -0.0046 0.6424 8 7 5.5416 -0.0538 0.4508 9 6 6.3206 1.0102 1.0822 10 6 6.3889 2.1960 0.1454 11 6 5.2370 3.1666 0.4558 12 7 3.9878 2.4386 0.7537 13 16 3.0354 2.9683 2.0005 14 8 2.7760 4.3431 1.7513 15 8 2.0076 1.9999 2.1597 16 7 3.9525 2.9076 3.3779 17 6 4.0527 1.6585 4.1368 18 6 4.6637 4.1030 3.8377 19 6 3.8237 4.8256 4.8591 20 1 2.8569 4.4334 5.1382 21 6 4.2898 5.9869 5.4381 22 7 5.4673 6.4642 5.0985 23 14 3.2489 6.8822 6.7046 24 1 3.5709 6.3707 8.0610 25 1 3.5374 8.3376 6.6431 26 1 1.8106 6.6501 6.4167 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 3.6820 -0.8795 0.1820 31 1 3.9219 -0.0008 1.7102 32 1 5.7699 -0.1365 -0.5285 33 1 7.3285 0.6504 1.2888 34 1 5.8421 1.3095 2.0147 35 1 6.3043 1.8500 -0.8848 36 1 7.3414 2.7090 0.2783 37 1 5.0753 3.8154 -0.4051 38 1 5.5076 3.7782 1.3164 39 1 4.8965 1.0757 3.7677 40 1 4.2020 1.8857 5.1924 41 1 3.1339 1.0847 4.0151 42 1 5.6121 3.8107 4.2885 43 1 4.8521 4.7621 2.9902 44 1 5.7951 7.2815 5.5056 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592388988.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:43:20 Heat of formation + Delta-G solvation = -128.978582 kcal Electronic energy + Delta-G solvation = -30499.953673 eV Core-core repulsion = 26387.517865 eV Total energy + Delta-G solvation = -4112.435808 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.139 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.78836 -38.87111 -36.84641 -36.33709 -35.54992 -35.02799 -34.30569 -33.10637 -32.45985 -28.49480 -27.84606 -26.67251 -26.18610 -25.06947 -22.71513 -22.28927 -21.59747 -20.85370 -18.79381 -17.90119 -17.36168 -16.87292 -16.61136 -16.44773 -16.08488 -15.69754 -15.36213 -15.19203 -15.09510 -14.74755 -14.27371 -13.66484 -13.43510 -13.41280 -13.28985 -13.01066 -12.60304 -12.47873 -12.19371 -12.08368 -11.99423 -11.90344 -11.59422 -11.32302 -11.28970 -11.27448 -11.11314 -11.07306 -10.75460 -10.69425 -10.63130 -10.50632 -10.45693 -10.04589 -9.78335 -9.27618 -8.47057 -8.34134 -8.12472 -6.09580 -4.13458 1.07605 2.21689 2.62059 3.30393 3.36174 3.36935 3.43798 4.06712 4.10857 4.42827 4.47912 4.61523 4.65240 4.87913 4.93142 5.05121 5.15266 5.18861 5.23590 5.29287 5.31390 5.34555 5.56392 5.63370 5.65899 5.67151 5.83802 5.86149 5.91719 6.05320 6.10227 6.25401 6.40383 6.46908 6.64312 7.10093 7.14165 7.29064 7.33501 7.54356 7.77216 7.87989 8.16522 8.88635 9.52081 10.99103 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.015580 B = 0.005036 C = 0.004308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1796.705466 B = 5559.088508 C = 6498.711982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.347 6.347 3 C 0.471 3.529 4 O -0.507 6.507 5 C 0.127 3.873 6 H 0.119 0.881 7 C 0.069 3.931 8 N -0.698 5.698 9 C 0.065 3.935 10 C -0.163 4.163 11 C 0.121 3.879 12 N -1.000 6.000 13 S 2.783 3.217 14 O -0.953 6.953 15 O -0.990 6.990 16 N -0.997 5.997 17 C 0.095 3.905 18 C 0.254 3.746 19 C -0.531 4.531 20 H 0.059 0.941 21 C 0.064 3.936 22 N -0.895 5.895 23 Si 0.897 3.103 24 H -0.279 1.279 25 H -0.284 1.284 26 H -0.272 1.272 27 H 0.099 0.901 28 H 0.070 0.930 29 H 0.058 0.942 30 H 0.102 0.898 31 H 0.082 0.918 32 H 0.344 0.656 33 H 0.078 0.922 34 H 0.081 0.919 35 H 0.067 0.933 36 H 0.086 0.914 37 H 0.070 0.930 38 H 0.093 0.907 39 H 0.040 0.960 40 H 0.080 0.920 41 H 0.064 0.936 42 H 0.037 0.963 43 H 0.038 0.962 44 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.488 -15.710 -12.199 19.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.263 6.263 3 C 0.313 3.687 4 O -0.395 6.395 5 C 0.015 3.985 6 H 0.137 0.863 7 C -0.064 4.064 8 N -0.327 5.327 9 C -0.063 4.063 10 C -0.203 4.203 11 C -0.004 4.004 12 N -0.838 5.838 13 S 2.792 3.208 14 O -0.936 6.936 15 O -0.974 6.974 16 N -0.840 5.840 17 C -0.052 4.052 18 C 0.132 3.868 19 C -0.570 4.570 20 H 0.078 0.922 21 C -0.139 4.139 22 N -0.534 5.534 23 Si 0.724 3.276 24 H -0.205 1.205 25 H -0.209 1.209 26 H -0.197 1.197 27 H 0.117 0.883 28 H 0.089 0.911 29 H 0.077 0.923 30 H 0.120 0.880 31 H 0.100 0.900 32 H 0.165 0.835 33 H 0.097 0.903 34 H 0.099 0.901 35 H 0.085 0.915 36 H 0.104 0.896 37 H 0.088 0.912 38 H 0.111 0.889 39 H 0.059 0.941 40 H 0.098 0.902 41 H 0.083 0.917 42 H 0.055 0.945 43 H 0.056 0.944 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.568 -15.338 -11.712 19.307 hybrid contribution -0.563 1.423 0.115 1.535 sum 0.005 -13.916 -11.598 18.115 Atomic orbital electron populations 1.23257 0.76079 1.03248 1.02948 1.86359 1.23609 1.32274 1.84016 1.23362 0.91407 0.82241 0.71705 1.90688 1.66877 1.36366 1.45553 1.21370 0.87526 0.89832 0.99765 0.86322 1.21737 0.87595 0.94648 1.02459 1.57103 1.07044 1.48725 1.19843 1.21610 0.98406 0.88382 0.97920 1.22578 0.99095 0.98408 1.00222 1.21742 0.82156 0.93278 1.03196 1.58115 1.37058 1.39384 1.49236 1.02164 0.72862 0.73575 0.72167 1.93607 1.82594 1.33174 1.84194 1.93459 1.54607 1.63229 1.86128 1.57696 1.68421 1.18556 1.39348 1.21390 1.00243 0.84998 0.98544 1.19127 0.92321 0.79627 0.95675 1.21471 1.04052 1.08487 1.23030 0.92231 1.24919 0.95160 0.96806 0.97006 1.69912 1.18115 1.22124 1.43232 0.86509 0.80899 0.78909 0.81262 1.20510 1.20949 1.19710 0.88278 0.91085 0.92315 0.88037 0.89998 0.83505 0.90321 0.90105 0.91456 0.89565 0.91179 0.88886 0.94116 0.90172 0.91713 0.94487 0.94406 0.92631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.45 10.56 101.05 1.07 1.51 16 2 O -0.35 -4.74 9.35 -39.34 -0.37 -5.11 16 3 C 0.47 7.64 5.04 36.01 0.18 7.83 16 4 O -0.51 -10.34 13.76 -26.83 -0.37 -10.71 16 5 C 0.13 1.67 2.58 -69.29 -0.18 1.49 16 6 H 0.12 1.20 8.11 -51.93 -0.42 0.77 16 7 C 0.07 0.75 5.46 -6.02 -0.03 0.72 16 8 N -0.70 -6.46 6.25 -118.41 -0.74 -7.20 16 9 C 0.07 0.66 6.18 -5.07 -0.03 0.63 16 10 C -0.16 -1.55 5.76 -27.19 -0.16 -1.71 16 11 C 0.12 1.65 6.21 -3.02 -0.02 1.63 16 12 N -1.00 -15.91 2.40 -107.64 -0.26 -16.17 16 13 S 2.78 59.76 4.35 -107.50 -0.47 59.30 16 14 O -0.95 -25.20 16.78 -57.17 -0.96 -26.16 16 15 O -0.99 -21.67 12.27 -67.16 -0.82 -22.50 16 16 N -1.00 -20.91 3.16 -123.05 -0.39 -21.30 16 17 C 0.09 1.62 10.66 59.85 0.64 2.26 16 18 C 0.25 6.33 4.59 -5.19 -0.02 6.30 16 19 C -0.53 -15.08 9.38 -34.44 -0.32 -15.40 16 20 H 0.06 1.72 7.81 -52.49 -0.41 1.31 16 21 C 0.06 1.81 5.46 -17.82 -0.10 1.71 16 22 N -0.89 -25.93 13.29 55.43 0.74 -25.19 16 23 Si 0.90 22.05 29.54 -169.99 -5.02 17.03 16 24 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 25 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 26 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 27 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 28 H 0.07 0.97 8.13 -51.93 -0.42 0.55 16 29 H 0.06 0.63 8.13 -51.93 -0.42 0.21 16 30 H 0.10 0.94 7.43 -51.93 -0.39 0.55 16 31 H 0.08 1.05 8.12 -51.93 -0.42 0.63 16 32 H 0.34 2.44 8.10 -39.29 -0.32 2.12 16 33 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.08 1.01 5.82 -51.93 -0.30 0.71 16 35 H 0.07 0.52 7.47 -51.93 -0.39 0.13 16 36 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 38 H 0.09 1.46 6.12 -51.93 -0.32 1.15 16 39 H 0.04 0.57 6.67 -51.93 -0.35 0.23 16 40 H 0.08 1.40 8.07 -51.93 -0.42 0.98 16 41 H 0.06 1.07 7.07 -51.93 -0.37 0.70 16 42 H 0.04 0.91 8.11 -51.93 -0.42 0.49 16 43 H 0.04 1.00 6.37 -51.93 -0.33 0.67 16 44 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 356.77 15.07 5.38 5.38 Total: -1.00 -36.42 356.77 -8.78 -45.20 By element: Atomic # 1 Polarization: 6.98 SS G_CDS: -6.52 Total: 0.46 kcal Atomic # 6 Polarization: 5.94 SS G_CDS: 1.02 Total: 6.97 kcal Atomic # 7 Polarization: -69.21 SS G_CDS: -0.65 Total: -69.86 kcal Atomic # 8 Polarization: -61.94 SS G_CDS: -2.52 Total: -64.46 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Atomic # 16 Polarization: 59.76 SS G_CDS: -0.47 Total: 59.30 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -36.42 -8.78 -45.20 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592388988.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.781 kcal (2) G-P(sol) polarization free energy of solvation -36.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds