Wall clock time and date at job start Tue Mar 31 2020 18:43:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45191 * 1 3 3 C 1.34240 * 117.00019 * 2 1 4 4 O 1.20822 * 119.99628 * 0.02562 * 3 2 1 5 5 C 1.50694 * 119.99701 * 180.02562 * 3 2 1 6 6 H 1.09003 * 109.39908 * 266.04497 * 5 3 2 7 7 C 1.55284 * 109.68177 * 26.14450 * 5 3 2 8 8 N 1.41439 * 110.00873 * 189.79631 * 7 5 3 9 9 C 1.46200 * 116.34743 * 296.44103 * 8 7 5 10 10 C 1.51275 * 109.08816 * 87.03857 * 9 8 7 11 11 C 1.53803 * 109.62931 * 267.58927 * 10 9 8 12 12 N 1.44891 * 109.43165 * 146.16265 * 5 3 2 13 13 S 1.65597 * 118.74525 * 330.23389 * 12 5 3 14 14 O 1.42104 * 106.39982 * 125.63431 * 13 12 5 15 15 O 1.42095 * 106.40252 * 352.71103 * 13 12 5 16 16 N 1.65600 * 107.21491 * 239.17227 * 13 12 5 17 17 C 1.46503 * 120.00017 * 269.99881 * 16 13 12 18 18 C 1.46498 * 120.00112 * 90.00384 * 16 13 12 19 19 C 1.50701 * 109.47191 * 94.99598 * 18 16 13 20 20 H 1.07998 * 120.00232 * 359.97438 * 19 18 16 21 21 C 1.37875 * 119.99859 * 180.27572 * 19 18 16 22 22 N 1.31520 * 120.00220 * 179.72504 * 21 19 18 23 23 Si 1.86800 * 120.00181 * 359.72978 * 21 19 18 24 24 H 1.48497 * 109.47691 * 89.99643 * 23 21 19 25 25 H 1.48504 * 109.47412 * 209.99838 * 23 21 19 26 26 H 1.48507 * 109.47102 * 329.99425 * 23 21 19 27 27 H 1.08999 * 109.47663 * 60.00026 * 1 2 3 28 28 H 1.08995 * 109.47336 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47172 * 299.99699 * 1 2 3 30 30 H 1.09002 * 109.43176 * 69.59208 * 7 5 3 31 31 H 1.09005 * 109.23495 * 309.87540 * 7 5 3 32 32 H 1.00896 * 111.00271 * 64.64892 * 8 7 5 33 33 H 1.09001 * 109.53072 * 327.15799 * 9 8 7 34 34 H 1.08990 * 109.53591 * 206.92150 * 9 8 7 35 35 H 1.08997 * 109.44132 * 147.54375 * 10 9 8 36 36 H 1.08996 * 109.44872 * 27.63802 * 10 9 8 37 37 H 1.09005 * 109.11111 * 279.57645 * 11 10 9 38 38 H 1.08995 * 109.11269 * 160.51410 * 11 10 9 39 39 H 1.09002 * 109.47309 * 270.00165 * 17 16 13 40 40 H 1.08998 * 109.47066 * 30.00429 * 17 16 13 41 41 H 1.09002 * 109.47154 * 150.00396 * 17 16 13 42 42 H 1.09003 * 109.46834 * 334.99917 * 18 16 13 43 43 H 1.08998 * 109.47508 * 215.00003 * 18 16 13 44 44 H 0.96994 * 119.99979 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5662 1.2749 -0.0006 6 1 3.9245 1.3644 1.0250 7 6 4.1569 -0.0084 -0.6453 8 7 5.5571 -0.0480 -0.4493 9 6 6.3310 1.0199 -1.0802 10 6 6.3887 2.2077 -0.1453 11 6 5.2314 3.1703 -0.4608 12 7 3.9880 2.4336 -0.7614 13 16 3.0353 2.9555 -2.0113 14 8 2.7651 4.3285 -1.7636 15 8 2.0153 1.9795 -2.1730 16 7 3.9570 2.9009 -3.3860 17 6 4.7453 4.0691 -3.7862 18 6 3.9841 1.6845 -4.2019 19 6 2.9751 1.8035 -5.3149 20 1 2.3734 2.6958 -5.4052 21 6 2.8156 0.7706 -6.2142 22 7 1.9312 0.8722 -7.1823 23 14 3.8556 -0.7731 -6.0575 24 1 3.1583 -1.7537 -5.1872 25 1 4.0660 -1.3669 -7.4023 26 1 5.1695 -0.4262 -5.4586 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 3.9409 -0.0098 -1.7137 31 1 3.7019 -0.8845 -0.1832 32 1 5.7829 -0.1277 0.5308 33 1 5.8522 1.3141 -2.0142 34 1 7.3418 0.6663 -1.2831 35 1 7.3382 2.7267 -0.2762 36 1 6.3032 1.8630 0.8852 37 1 5.5007 3.7821 -1.3219 38 1 5.0629 3.8195 0.3983 39 1 4.1446 4.7084 -4.4332 40 1 5.0434 4.6276 -2.8990 41 1 5.6344 3.7404 -4.3244 42 1 3.7387 0.8240 -3.5794 43 1 4.9795 1.5537 -4.6263 44 1 1.8188 0.1455 -7.8147 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592388989.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:43:23 Heat of formation + Delta-G solvation = -122.756344 kcal Electronic energy + Delta-G solvation = -30882.004374 eV Core-core repulsion = 26769.838382 eV Total energy + Delta-G solvation = -4112.165992 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.139 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.71250 -38.86523 -36.83547 -36.37030 -35.70886 -35.11733 -34.36430 -33.12101 -32.40001 -28.50705 -28.41708 -26.61361 -26.23913 -25.25505 -22.64965 -21.98704 -21.59419 -20.91767 -18.83684 -17.88307 -17.32844 -17.06010 -16.78977 -16.61133 -16.03053 -15.75752 -15.47628 -15.26286 -15.13716 -14.65668 -14.20332 -13.77846 -13.48596 -13.32743 -13.12549 -13.11173 -12.70988 -12.64641 -12.45077 -12.16390 -12.01326 -11.91558 -11.68638 -11.45239 -11.35448 -11.34410 -11.31962 -11.23451 -10.79742 -10.66089 -10.50793 -10.46509 -10.41952 -10.25599 -9.57918 -9.36422 -8.60493 -8.32154 -8.20079 -6.09232 -4.09063 0.96165 2.25285 2.69336 3.24671 3.28992 3.32226 3.35578 4.00778 4.12797 4.37090 4.46119 4.52092 4.58951 4.78136 4.86631 4.96622 4.98993 5.15125 5.21075 5.29603 5.37054 5.41280 5.45450 5.49447 5.58108 5.64020 5.81319 5.85114 5.87337 5.99470 6.02425 6.20518 6.35715 6.39721 6.56199 6.66056 7.00786 7.13280 7.29690 7.33908 7.55261 7.82807 8.47200 8.95526 9.49150 11.04270 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.010904 B = 0.006589 C = 0.006029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2567.173361 B = 4248.540539 C = 4642.968485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.344 6.344 3 C 0.474 3.526 4 O -0.512 6.512 5 C 0.127 3.873 6 H 0.120 0.880 7 C 0.065 3.935 8 N -0.696 5.696 9 C 0.065 3.935 10 C -0.163 4.163 11 C 0.122 3.878 12 N -1.001 6.001 13 S 2.783 3.217 14 O -0.981 6.981 15 O -0.953 6.953 16 N -0.993 5.993 17 C 0.102 3.898 18 C 0.231 3.769 19 C -0.531 4.531 20 H 0.076 0.924 21 C 0.074 3.926 22 N -0.894 5.894 23 Si 0.871 3.129 24 H -0.271 1.271 25 H -0.284 1.284 26 H -0.264 1.264 27 H 0.074 0.926 28 H 0.100 0.900 29 H 0.057 0.943 30 H 0.088 0.912 31 H 0.103 0.897 32 H 0.343 0.657 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.084 0.916 36 H 0.069 0.931 37 H 0.083 0.917 38 H 0.070 0.930 39 H 0.057 0.943 40 H 0.053 0.947 41 H 0.071 0.929 42 H 0.027 0.973 43 H 0.034 0.966 44 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.949 -1.438 17.448 20.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.259 6.259 3 C 0.316 3.684 4 O -0.400 6.400 5 C 0.015 3.985 6 H 0.137 0.863 7 C -0.068 4.068 8 N -0.325 5.325 9 C -0.064 4.064 10 C -0.204 4.204 11 C -0.002 4.002 12 N -0.840 5.840 13 S 2.792 3.208 14 O -0.964 6.964 15 O -0.937 6.937 16 N -0.835 5.835 17 C -0.044 4.044 18 C 0.108 3.892 19 C -0.570 4.570 20 H 0.095 0.905 21 C -0.129 4.129 22 N -0.532 5.532 23 Si 0.697 3.303 24 H -0.196 1.196 25 H -0.210 1.210 26 H -0.188 1.188 27 H 0.092 0.908 28 H 0.118 0.882 29 H 0.076 0.924 30 H 0.106 0.894 31 H 0.121 0.879 32 H 0.164 0.836 33 H 0.099 0.901 34 H 0.097 0.903 35 H 0.102 0.898 36 H 0.088 0.912 37 H 0.101 0.899 38 H 0.088 0.912 39 H 0.076 0.924 40 H 0.071 0.929 41 H 0.090 0.910 42 H 0.045 0.955 43 H 0.052 0.948 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 8.827 -1.340 16.824 19.046 hybrid contribution 0.309 -0.043 0.476 0.569 sum 9.136 -1.383 17.299 19.613 Atomic orbital electron populations 1.23284 0.75820 1.03452 1.02959 1.86360 1.23824 1.32024 1.83676 1.23244 0.91250 0.82360 0.71562 1.90670 1.66890 1.36395 1.46068 1.21567 0.87860 0.89707 0.99329 0.86259 1.21983 0.87178 0.94577 1.03053 1.57026 1.07452 1.48488 1.19532 1.21596 0.98577 0.88303 0.97900 1.22605 0.98592 0.98535 1.00621 1.21710 0.82863 0.93278 1.02354 1.58112 1.37078 1.39794 1.48976 1.02199 0.73029 0.73716 0.71822 1.93534 1.82958 1.34861 1.85053 1.93565 1.53539 1.61468 1.85097 1.57519 1.64458 1.22160 1.39388 1.21358 0.96012 0.87305 0.99705 1.19459 0.98209 0.80586 0.90959 1.21333 1.20606 1.04814 1.10288 0.90544 1.24869 0.95020 0.98076 0.94923 1.69900 1.34160 1.32991 1.16172 0.86944 0.81345 0.84092 0.77914 1.19638 1.20953 1.18832 0.90766 0.88191 0.92402 0.89369 0.87902 0.83580 0.90117 0.90325 0.89762 0.91239 0.89863 0.91201 0.92432 0.92856 0.91047 0.95494 0.94834 0.92507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.53 10.56 101.05 1.07 1.59 16 2 O -0.34 -5.39 9.40 -39.39 -0.37 -5.76 16 3 C 0.47 8.23 5.02 36.00 0.18 8.41 16 4 O -0.51 -10.67 13.82 -26.79 -0.37 -11.04 16 5 C 0.13 1.74 2.63 -68.74 -0.18 1.56 16 6 H 0.12 1.20 8.11 -51.93 -0.42 0.78 16 7 C 0.07 0.84 5.51 -5.47 -0.03 0.81 16 8 N -0.70 -7.26 6.25 -117.78 -0.74 -7.99 16 9 C 0.06 0.66 6.18 -5.07 -0.03 0.63 16 10 C -0.16 -1.31 5.77 -27.18 -0.16 -1.47 16 11 C 0.12 1.37 6.21 -3.01 -0.02 1.35 16 12 N -1.00 -15.32 2.38 -107.04 -0.25 -15.57 16 13 S 2.78 58.63 4.29 -107.50 -0.46 58.17 16 14 O -0.98 -22.82 17.05 -57.17 -0.97 -23.79 16 15 O -0.95 -23.22 12.60 -67.12 -0.85 -24.06 16 16 N -0.99 -20.25 3.19 -123.05 -0.39 -20.64 16 17 C 0.10 1.71 9.91 59.85 0.59 2.30 16 18 C 0.23 5.35 4.19 -5.19 -0.02 5.33 16 19 C -0.53 -15.18 9.94 -34.44 -0.34 -15.53 16 20 H 0.08 2.43 8.06 -52.49 -0.42 2.01 16 21 C 0.07 2.14 5.47 -17.82 -0.10 2.05 16 22 N -0.89 -27.57 13.96 55.43 0.77 -26.80 16 23 Si 0.87 20.96 27.46 -169.99 -4.67 16.29 16 24 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 25 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 26 H -0.26 -5.85 6.55 56.52 0.37 -5.48 16 27 H 0.07 1.20 8.13 -51.93 -0.42 0.78 16 28 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.06 0.70 8.13 -51.93 -0.42 0.28 16 30 H 0.09 1.45 6.81 -51.93 -0.35 1.09 16 31 H 0.10 1.17 7.48 -51.93 -0.39 0.78 16 32 H 0.34 2.62 8.10 -39.29 -0.32 2.30 16 33 H 0.08 1.05 7.32 -51.93 -0.38 0.67 16 34 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.07 0.46 7.47 -51.93 -0.39 0.07 16 37 H 0.08 0.92 5.49 -51.93 -0.28 0.63 16 38 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.05 0.73 5.97 -51.93 -0.31 0.42 16 41 H 0.07 1.02 7.94 -51.93 -0.41 0.61 16 42 H 0.03 0.63 5.72 -51.93 -0.30 0.33 16 43 H 0.03 0.73 7.03 -51.93 -0.37 0.37 16 44 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 353.34 15.07 5.32 5.32 Total: -1.00 -38.02 353.34 -8.48 -46.50 By element: Atomic # 1 Polarization: 8.79 SS G_CDS: -6.47 Total: 2.32 kcal Atomic # 6 Polarization: 6.08 SS G_CDS: 0.96 Total: 7.05 kcal Atomic # 7 Polarization: -70.40 SS G_CDS: -0.61 Total: -71.01 kcal Atomic # 8 Polarization: -62.09 SS G_CDS: -2.56 Total: -64.65 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -4.67 Total: 16.29 kcal Atomic # 16 Polarization: 58.63 SS G_CDS: -0.46 Total: 58.17 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -38.02 -8.48 -46.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592388989.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.252 kcal (2) G-P(sol) polarization free energy of solvation -38.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds