Wall clock time and date at job start Tue Mar 31 2020 18:43:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45191 * 1 3 3 C 1.34240 * 117.00019 * 2 1 4 4 O 1.20822 * 119.99628 * 0.02562 * 3 2 1 5 5 C 1.50694 * 119.99701 * 180.02562 * 3 2 1 6 6 H 1.09003 * 109.39908 * 266.04497 * 5 3 2 7 7 C 1.55284 * 109.68177 * 26.14450 * 5 3 2 8 8 N 1.41439 * 110.00873 * 189.79631 * 7 5 3 9 9 C 1.46200 * 116.34743 * 296.44103 * 8 7 5 10 10 C 1.51275 * 109.08816 * 87.03857 * 9 8 7 11 11 C 1.53803 * 109.62931 * 267.58927 * 10 9 8 12 12 N 1.44891 * 109.43165 * 146.16265 * 5 3 2 13 13 S 1.65597 * 118.74525 * 330.23389 * 12 5 3 14 14 O 1.42104 * 106.39982 * 125.63431 * 13 12 5 15 15 O 1.42095 * 106.40252 * 352.71103 * 13 12 5 16 16 N 1.65600 * 107.21491 * 239.17227 * 13 12 5 17 17 C 1.46503 * 120.00017 * 269.99881 * 16 13 12 18 18 C 1.46498 * 120.00112 * 90.00384 * 16 13 12 19 19 C 1.50701 * 109.47191 * 94.99598 * 18 16 13 20 20 H 1.07998 * 120.00232 * 359.97438 * 19 18 16 21 21 C 1.37875 * 119.99859 * 180.27572 * 19 18 16 22 22 N 1.31520 * 120.00220 * 179.72504 * 21 19 18 23 23 Si 1.86800 * 120.00181 * 359.72978 * 21 19 18 24 24 H 1.48497 * 109.47691 * 89.99643 * 23 21 19 25 25 H 1.48504 * 109.47412 * 209.99838 * 23 21 19 26 26 H 1.48507 * 109.47102 * 329.99425 * 23 21 19 27 27 H 1.08999 * 109.47663 * 60.00026 * 1 2 3 28 28 H 1.08995 * 109.47336 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47172 * 299.99699 * 1 2 3 30 30 H 1.09002 * 109.43176 * 69.59208 * 7 5 3 31 31 H 1.09005 * 109.23495 * 309.87540 * 7 5 3 32 32 H 1.00896 * 111.00271 * 64.64892 * 8 7 5 33 33 H 1.09001 * 109.53072 * 327.15799 * 9 8 7 34 34 H 1.08990 * 109.53591 * 206.92150 * 9 8 7 35 35 H 1.08997 * 109.44132 * 147.54375 * 10 9 8 36 36 H 1.08996 * 109.44872 * 27.63802 * 10 9 8 37 37 H 1.09005 * 109.11111 * 279.57645 * 11 10 9 38 38 H 1.08995 * 109.11269 * 160.51410 * 11 10 9 39 39 H 1.09002 * 109.47309 * 270.00165 * 17 16 13 40 40 H 1.08998 * 109.47066 * 30.00429 * 17 16 13 41 41 H 1.09002 * 109.47154 * 150.00396 * 17 16 13 42 42 H 1.09003 * 109.46834 * 334.99917 * 18 16 13 43 43 H 1.08998 * 109.47508 * 215.00003 * 18 16 13 44 44 H 0.96994 * 119.99979 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5662 1.2749 -0.0006 6 1 3.9245 1.3644 1.0250 7 6 4.1569 -0.0084 -0.6453 8 7 5.5571 -0.0480 -0.4493 9 6 6.3310 1.0199 -1.0802 10 6 6.3887 2.2077 -0.1453 11 6 5.2314 3.1703 -0.4608 12 7 3.9880 2.4336 -0.7614 13 16 3.0353 2.9555 -2.0113 14 8 2.7651 4.3285 -1.7636 15 8 2.0153 1.9795 -2.1730 16 7 3.9570 2.9009 -3.3860 17 6 4.7453 4.0691 -3.7862 18 6 3.9841 1.6845 -4.2019 19 6 2.9751 1.8035 -5.3149 20 1 2.3734 2.6958 -5.4052 21 6 2.8156 0.7706 -6.2142 22 7 1.9312 0.8722 -7.1823 23 14 3.8556 -0.7731 -6.0575 24 1 3.1583 -1.7537 -5.1872 25 1 4.0660 -1.3669 -7.4023 26 1 5.1695 -0.4262 -5.4586 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 3.9409 -0.0098 -1.7137 31 1 3.7019 -0.8845 -0.1832 32 1 5.7829 -0.1277 0.5308 33 1 5.8522 1.3141 -2.0142 34 1 7.3418 0.6663 -1.2831 35 1 7.3382 2.7267 -0.2762 36 1 6.3032 1.8630 0.8852 37 1 5.5007 3.7821 -1.3219 38 1 5.0629 3.8195 0.3983 39 1 4.1446 4.7084 -4.4332 40 1 5.0434 4.6276 -2.8990 41 1 5.6344 3.7404 -4.3244 42 1 3.7387 0.8240 -3.5794 43 1 4.9795 1.5537 -4.6263 44 1 1.8188 0.1455 -7.8147 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592388989.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:43:22 Heat of formation + Delta-G solvation = -154.998504 kcal Electronic energy + Delta-G solvation = -30883.402499 eV Core-core repulsion = 26769.838382 eV Total energy + Delta-G solvation = -4113.564117 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.139 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.96182 -39.85314 -38.47315 -37.79312 -37.36520 -36.82510 -35.39669 -34.57030 -33.98892 -30.36823 -29.52396 -27.67100 -27.16784 -26.87626 -23.92391 -23.67777 -22.68365 -21.90216 -20.17094 -19.42375 -19.09301 -18.55263 -18.34272 -17.95776 -17.35129 -17.01105 -16.88109 -16.31311 -16.15398 -15.97084 -15.65112 -15.37204 -14.73321 -14.70910 -14.52587 -14.44216 -14.20313 -14.09195 -13.60259 -13.51250 -13.25923 -13.18596 -13.11978 -13.07265 -13.02553 -12.94478 -12.49387 -12.33742 -12.19163 -12.10883 -12.02149 -11.79651 -11.75970 -11.71622 -11.65942 -10.80738 -10.40378 -9.90610 -9.16388 -8.31713 -6.38572 -0.59818 0.96786 1.35503 1.40321 1.48173 1.53362 1.89507 2.33455 2.51474 3.01596 3.22410 3.29386 3.47080 3.51885 3.76452 3.88714 3.90993 4.11907 4.20511 4.25510 4.30564 4.35074 4.38337 4.53587 4.65361 4.68112 4.69882 4.76503 4.84355 4.93262 4.99083 5.08474 5.14232 5.20888 5.32454 5.35071 5.43132 5.46434 5.67599 6.26070 6.30552 6.53750 6.63781 6.70896 7.24477 8.86268 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.010904 B = 0.006589 C = 0.006029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2567.173361 B = 4248.540539 C = 4642.968485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.342 6.342 3 C 0.463 3.537 4 O -0.556 6.556 5 C 0.126 3.874 6 H 0.168 0.832 7 C 0.076 3.924 8 N -0.693 5.693 9 C 0.059 3.941 10 C -0.149 4.149 11 C 0.107 3.893 12 N -0.990 5.990 13 S 2.788 3.212 14 O -1.015 7.015 15 O -0.999 6.999 16 N -0.997 5.997 17 C 0.092 3.908 18 C 0.244 3.756 19 C -0.545 4.545 20 H 0.019 0.981 21 C 0.008 3.992 22 N -0.949 5.949 23 Si 0.944 3.056 24 H -0.268 1.268 25 H -0.278 1.278 26 H -0.224 1.224 27 H 0.037 0.963 28 H 0.139 0.861 29 H 0.071 0.929 30 H 0.049 0.951 31 H 0.118 0.882 32 H 0.364 0.636 33 H 0.051 0.949 34 H 0.098 0.902 35 H 0.113 0.887 36 H 0.094 0.906 37 H 0.082 0.918 38 H 0.084 0.916 39 H 0.033 0.967 40 H 0.085 0.915 41 H 0.100 0.900 42 H 0.030 0.970 43 H 0.061 0.939 44 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.053 -3.323 20.151 24.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.256 6.256 3 C 0.307 3.693 4 O -0.448 6.448 5 C 0.015 3.985 6 H 0.185 0.815 7 C -0.058 4.058 8 N -0.324 5.324 9 C -0.070 4.070 10 C -0.189 4.189 11 C -0.015 4.015 12 N -0.833 5.833 13 S 2.798 3.202 14 O -0.998 6.998 15 O -0.982 6.982 16 N -0.839 5.839 17 C -0.053 4.053 18 C 0.120 3.880 19 C -0.584 4.584 20 H 0.037 0.963 21 C -0.190 4.190 22 N -0.589 5.589 23 Si 0.765 3.235 24 H -0.193 1.193 25 H -0.203 1.203 26 H -0.147 1.147 27 H 0.056 0.944 28 H 0.157 0.843 29 H 0.090 0.910 30 H 0.068 0.932 31 H 0.136 0.864 32 H 0.188 0.812 33 H 0.070 0.930 34 H 0.116 0.884 35 H 0.131 0.869 36 H 0.112 0.888 37 H 0.100 0.900 38 H 0.103 0.897 39 H 0.052 0.948 40 H 0.104 0.896 41 H 0.119 0.881 42 H 0.048 0.952 43 H 0.079 0.921 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 12.964 -3.199 19.548 23.673 hybrid contribution -1.045 0.628 -0.328 1.263 sum 11.919 -2.571 19.220 22.762 Atomic orbital electron populations 1.23505 0.75092 1.05704 1.01854 1.86359 1.24678 1.31425 1.83142 1.24160 0.92918 0.82008 0.70166 1.90645 1.68195 1.37813 1.48193 1.22067 0.85364 0.89489 1.01590 0.81499 1.21828 0.88829 0.94452 1.00654 1.57000 1.05611 1.48663 1.21139 1.21683 0.98944 0.89145 0.97203 1.22558 0.98054 0.96985 1.01297 1.22169 0.82124 0.94219 1.03019 1.57680 1.37881 1.40579 1.47154 1.01691 0.73100 0.72683 0.72728 1.93481 1.83908 1.36734 1.85707 1.93497 1.56380 1.62347 1.86010 1.57379 1.64746 1.22346 1.39428 1.21641 0.96119 0.86258 1.01275 1.19195 0.97435 0.81908 0.89457 1.21655 1.21326 1.02992 1.12430 0.96251 1.25970 0.96539 1.02330 0.94161 1.70084 1.36629 1.34618 1.17593 0.85782 0.80879 0.78425 0.78401 1.19305 1.20335 1.14661 0.94408 0.84264 0.91022 0.93207 0.86366 0.81223 0.93002 0.88430 0.86873 0.88784 0.89950 0.89723 0.94832 0.89629 0.88135 0.95173 0.92132 0.92297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.87 10.56 113.37 1.20 2.07 16 2 O -0.34 -10.57 9.40 -51.42 -0.48 -11.05 16 3 C 0.46 15.98 5.02 71.23 0.36 16.34 16 4 O -0.56 -23.93 13.82 29.67 0.41 -23.52 16 5 C 0.13 3.16 2.63 45.33 0.12 3.28 16 6 H 0.17 2.59 8.11 -2.39 -0.02 2.57 16 7 C 0.08 1.76 5.51 88.08 0.49 2.24 16 8 N -0.69 -11.36 6.25 -526.53 -3.29 -14.66 16 9 C 0.06 0.93 6.18 85.87 0.53 1.46 16 10 C -0.15 -1.58 5.77 30.30 0.17 -1.40 16 11 C 0.11 2.03 6.21 86.44 0.54 2.57 16 12 N -0.99 -28.59 2.38 -492.58 -1.17 -29.76 16 13 S 2.79 119.88 4.29 -56.49 -0.24 119.64 16 14 O -1.02 -48.73 17.05 -128.00 -2.18 -50.91 16 15 O -1.00 -51.04 12.60 -118.49 -1.49 -52.53 16 16 N -1.00 -40.98 3.19 -543.22 -1.73 -42.71 16 17 C 0.09 3.03 9.91 127.77 1.27 4.30 16 18 C 0.24 11.29 4.19 85.63 0.36 11.65 16 19 C -0.54 -32.45 9.94 25.60 0.25 -32.20 16 20 H 0.02 1.32 8.06 -2.91 -0.02 1.30 16 21 C 0.01 0.46 5.47 84.65 0.46 0.92 16 22 N -0.95 -61.13 13.96 21.45 0.30 -60.83 16 23 Si 0.94 42.90 27.46 68.60 1.88 44.79 16 24 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 25 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 26 H -0.22 -8.70 6.55 99.48 0.65 -8.05 16 27 H 0.04 1.31 8.13 -2.39 -0.02 1.29 16 28 H 0.14 2.63 8.14 -2.39 -0.02 2.61 16 29 H 0.07 1.74 8.13 -2.38 -0.02 1.72 16 30 H 0.05 1.57 6.81 -2.39 -0.02 1.55 16 31 H 0.12 2.33 7.48 -2.38 -0.02 2.31 16 32 H 0.36 3.49 8.10 -89.70 -0.73 2.76 16 33 H 0.05 1.16 7.32 -2.39 -0.02 1.14 16 34 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.11 0.67 8.14 -2.39 -0.02 0.65 16 36 H 0.09 0.60 7.47 -2.39 -0.02 0.58 16 37 H 0.08 1.56 5.49 -2.38 -0.01 1.55 16 38 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 39 H 0.03 1.23 8.14 -2.39 -0.02 1.22 16 40 H 0.09 2.22 5.97 -2.39 -0.01 2.21 16 41 H 0.10 2.68 7.94 -2.39 -0.02 2.66 16 42 H 0.03 1.40 5.72 -2.39 -0.01 1.39 16 43 H 0.06 2.49 7.03 -2.39 -0.02 2.47 16 44 H 0.27 15.97 8.31 -92.71 -0.77 15.20 16 Total: -1.00 -91.50 353.34 -2.02 -93.52 By element: Atomic # 1 Polarization: 16.56 SS G_CDS: 0.24 Total: 16.80 kcal Atomic # 6 Polarization: 5.49 SS G_CDS: 5.74 Total: 11.23 kcal Atomic # 7 Polarization: -142.06 SS G_CDS: -5.90 Total: -147.96 kcal Atomic # 8 Polarization: -134.27 SS G_CDS: -3.75 Total: -138.02 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 1.88 Total: 44.79 kcal Atomic # 16 Polarization: 119.88 SS G_CDS: -0.24 Total: 119.64 kcal Total: -91.50 -2.02 -93.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592388989.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.481 kcal (2) G-P(sol) polarization free energy of solvation -91.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds