Wall clock time and date at job start Tue Mar 31 2020 18:30:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 S 1.81403 * 109.46954 * 2 1 4 4 C 1.81407 * 102.99835 * 179.97438 * 3 2 1 5 5 C 1.50697 * 109.47196 * 179.97438 * 4 3 2 6 6 C 1.38350 * 119.85384 * 89.99938 * 5 4 3 7 7 C 1.37960 * 120.14937 * 179.97438 * 6 5 4 8 8 C 1.39578 * 119.84916 * 0.03097 * 7 6 5 9 9 C 1.47844 * 120.14432 * 179.97438 * 8 7 6 10 10 O 1.21554 * 119.99873 * 352.51298 * 9 8 7 11 11 N 1.34780 * 119.99834 * 172.50869 * 9 8 7 12 12 C 1.47018 * 125.64922 * 5.23646 * 11 9 8 13 13 C 1.54324 * 107.26888 * 181.02390 * 12 11 9 14 14 C 1.55154 * 102.94467 * 22.19045 * 13 12 11 15 15 O 1.42902 * 111.00483 * 82.57603 * 14 13 12 16 16 C 1.50707 * 111.00467 * 206.42511 * 14 13 12 17 17 H 1.07993 * 119.99926 * 120.78646 * 16 14 13 18 18 C 1.37870 * 119.99911 * 300.79259 * 16 14 13 19 19 N 1.31510 * 120.00190 * 177.89969 * 18 16 14 20 20 Si 1.86806 * 120.00262 * 357.89297 * 18 16 14 21 21 H 1.48504 * 109.46726 * 93.61346 * 20 18 16 22 22 H 1.48496 * 109.47442 * 213.61497 * 20 18 16 23 23 H 1.48500 * 109.46842 * 333.61794 * 20 18 16 24 24 C 1.47430 * 125.64618 * 185.19010 * 11 9 8 25 25 C 1.39580 * 119.71039 * 0.24302 * 8 7 6 26 26 C 1.37958 * 119.85253 * 359.47665 * 25 8 7 27 27 H 1.08997 * 109.47888 * 300.00864 * 1 2 3 28 28 H 1.09007 * 109.46888 * 60.00744 * 1 2 3 29 29 H 1.09004 * 109.47171 * 180.02562 * 1 2 3 30 30 H 1.08988 * 109.47765 * 239.99336 * 2 1 3 31 31 H 1.09007 * 109.46888 * 119.99256 * 2 1 3 32 32 H 1.09002 * 109.46539 * 59.99891 * 4 3 2 33 33 H 1.08994 * 109.47453 * 299.99880 * 4 3 2 34 34 H 1.07998 * 119.93023 * 359.97438 * 6 5 4 35 35 H 1.08004 * 120.07741 * 179.97438 * 7 6 5 36 36 H 1.09001 * 109.88417 * 61.60684 * 12 11 9 37 37 H 1.09001 * 109.88171 * 300.43844 * 12 11 9 38 38 H 1.09007 * 110.71831 * 263.82762 * 13 12 11 39 39 H 1.08996 * 110.72040 * 140.56060 * 13 12 11 40 40 H 0.96700 * 113.99770 * 180.02562 * 15 14 13 41 41 H 0.97000 * 120.00759 * 179.97438 * 19 18 16 42 42 H 1.09006 * 110.36354 * 37.07431 * 24 11 9 43 43 H 1.08998 * 110.36592 * 274.74877 * 24 11 9 44 44 H 1.07997 * 120.07087 * 179.72849 * 25 8 7 45 45 H 1.08001 * 119.92689 * 180.27000 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1346 1.7103 0.0000 4 6 3.9371 1.5058 0.0008 5 6 4.5964 2.8610 0.0002 6 6 4.8972 3.4810 1.1999 7 6 5.5012 4.7213 1.2065 8 6 5.8082 5.3509 -0.0008 9 6 6.4550 6.6804 -0.0013 10 8 6.5972 7.2875 1.0421 11 7 6.8870 7.2191 -1.1588 12 6 6.6836 6.6482 -2.4982 13 6 7.3702 7.5922 -3.5077 14 6 8.4066 8.3439 -2.6312 15 8 9.5957 7.5688 -2.4658 16 6 8.7235 9.6982 -3.2113 17 1 8.5436 10.5902 -2.6298 18 6 9.2432 9.7984 -4.4844 19 7 9.4811 10.9818 -5.0063 20 14 9.6095 8.2531 -5.4681 21 1 8.4407 7.9213 -6.3220 22 1 10.7999 8.4827 -6.3256 23 1 9.8789 7.1269 -4.5384 24 6 7.6410 8.4791 -1.2914 25 6 5.4968 4.7224 -1.2076 26 6 4.8981 3.4796 -1.2000 27 1 -0.3635 0.5139 0.8898 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0277 0.0005 30 1 1.8934 -0.5139 -0.8898 31 1 1.8933 -0.5138 0.8901 32 1 4.2405 0.9542 -0.8890 33 1 4.2399 0.9545 0.8909 34 1 4.6587 2.9930 2.1333 35 1 5.7352 5.2044 2.1437 36 1 5.6175 6.5846 -2.7161 37 1 7.1348 5.6573 -2.5512 38 1 6.6495 8.2890 -3.9358 39 1 7.8691 7.0219 -4.2912 40 1 10.2726 7.9978 -1.9246 41 1 9.8471 11.0524 -5.9019 42 1 8.3415 8.5909 -0.4638 43 1 6.9579 9.3277 -1.3287 44 1 5.7278 5.2063 -2.1451 45 1 4.6606 2.9903 -2.1331 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592841271.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:30:08 Heat of formation + Delta-G solvation = -32.151174 kcal Electronic energy + Delta-G solvation = -26125.208256 eV Core-core repulsion = 22427.820463 eV Total energy + Delta-G solvation = -3697.387794 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.134 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.41060 -38.77818 -37.43544 -34.79201 -33.22240 -33.10881 -32.48386 -31.23083 -30.40361 -28.73177 -27.68668 -25.31863 -24.06694 -23.48630 -22.54312 -21.50353 -20.04468 -19.67012 -17.55590 -17.17893 -16.73468 -16.08468 -15.67928 -15.50687 -15.29363 -15.13142 -15.00784 -14.84411 -14.55050 -14.14588 -13.71013 -13.55045 -13.43314 -13.12481 -13.01964 -12.87696 -12.73791 -12.54218 -12.23537 -12.09244 -11.87105 -11.73301 -11.44774 -11.36716 -11.18006 -10.86382 -10.60538 -10.36469 -10.32658 -10.12171 -9.59773 -9.10278 -9.02427 -8.86518 -8.77306 -8.63727 -8.12282 -8.03758 -6.26830 -4.39745 0.49807 1.27185 1.48122 2.19745 3.02745 3.22575 3.30504 3.37897 3.56628 3.86682 4.26990 4.35825 4.43078 4.45100 4.51629 4.65892 4.81073 4.88443 4.92526 5.00651 5.05646 5.07335 5.22951 5.24537 5.32917 5.36695 5.41705 5.43858 5.62592 5.62971 5.68625 5.76027 5.87457 6.03453 6.16706 6.27918 6.30133 6.38417 6.50462 6.55530 6.64031 6.76695 7.05668 7.39937 7.85016 8.14143 8.42028 8.69624 8.85747 9.35168 10.83375 Molecular weight = 335.13amu Principal moments of inertia in cm(-1) A = 0.021164 B = 0.002440 C = 0.002283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.667780 B =11473.460230 C =12260.338325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.095 4.095 3 S -0.249 6.249 4 C -0.046 4.046 5 C -0.061 4.061 6 C -0.112 4.112 7 C -0.062 4.062 8 C -0.116 4.116 9 C 0.565 3.435 10 O -0.548 6.548 11 N -0.600 5.600 12 C 0.093 3.907 13 C -0.129 4.129 14 C 0.217 3.783 15 O -0.572 6.572 16 C -0.552 4.552 17 H 0.080 0.920 18 C 0.089 3.911 19 N -0.885 5.885 20 Si 0.869 3.131 21 H -0.284 1.284 22 H -0.298 1.298 23 H -0.222 1.222 24 C 0.094 3.906 25 C -0.122 4.122 26 C -0.109 4.109 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.070 0.930 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.128 0.872 35 H 0.137 0.863 36 H 0.071 0.929 37 H 0.074 0.926 38 H 0.091 0.909 39 H 0.076 0.924 40 H 0.366 0.634 41 H 0.267 0.733 42 H 0.071 0.929 43 H 0.075 0.925 44 H 0.166 0.834 45 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.178 -22.325 7.548 27.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.244 4.244 3 S -0.021 6.021 4 C -0.193 4.193 5 C -0.062 4.062 6 C -0.132 4.132 7 C -0.081 4.081 8 C -0.120 4.120 9 C 0.355 3.645 10 O -0.427 6.427 11 N -0.331 5.331 12 C -0.030 4.030 13 C -0.167 4.167 14 C 0.176 3.824 15 O -0.379 6.379 16 C -0.589 4.589 17 H 0.098 0.902 18 C -0.117 4.117 19 N -0.521 5.521 20 Si 0.696 3.304 21 H -0.211 1.211 22 H -0.225 1.225 23 H -0.145 1.145 24 C -0.028 4.028 25 C -0.140 4.140 26 C -0.129 4.129 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.089 0.911 30 H 0.099 0.901 31 H 0.098 0.902 32 H 0.110 0.890 33 H 0.109 0.891 34 H 0.146 0.854 35 H 0.154 0.846 36 H 0.089 0.911 37 H 0.092 0.908 38 H 0.110 0.890 39 H 0.094 0.906 40 H 0.214 0.786 41 H 0.077 0.923 42 H 0.089 0.911 43 H 0.094 0.906 44 H 0.182 0.818 45 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -14.032 -21.465 7.649 26.761 hybrid contribution 1.178 -1.396 -0.376 1.865 sum -12.854 -22.861 7.273 27.216 Atomic orbital electron populations 1.21508 0.92145 1.02531 1.03348 1.23345 1.00365 0.95832 1.04819 1.87368 1.04498 1.12136 1.98065 1.22309 0.93534 0.97708 1.05794 1.19355 0.98258 0.94557 0.94073 1.20938 0.99499 0.95268 0.97452 1.21238 0.95123 0.93899 0.97876 1.20047 1.02197 0.95319 0.94398 1.17918 0.78807 0.85136 0.82661 1.90742 1.58032 1.62930 1.31037 1.48425 1.54502 1.24718 1.05495 1.22546 0.99352 0.98021 0.83055 1.23050 0.98564 0.97942 0.97131 1.20112 0.82625 0.90475 0.89166 1.86480 1.28015 1.49067 1.74331 1.21119 1.45736 0.90953 1.01122 0.90223 1.24955 0.93258 0.96261 0.97230 1.69920 1.42368 1.23483 1.16290 0.87166 0.77526 0.85835 0.79834 1.21100 1.22504 1.14456 1.23074 0.95041 0.84481 1.00196 1.22864 0.96099 0.95092 0.99935 1.21005 0.99142 0.95338 0.97396 0.91630 0.91592 0.91107 0.90127 0.90166 0.89025 0.89087 0.85383 0.84553 0.91076 0.90783 0.89000 0.90561 0.78626 0.92291 0.91097 0.90632 0.81757 0.85368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.73 9.92 37.16 0.37 -0.36 16 2 C -0.10 -0.57 6.66 37.16 0.25 -0.33 16 3 S -0.25 -2.25 21.72 -107.50 -2.33 -4.58 16 4 C -0.05 -0.36 6.06 36.00 0.22 -0.15 16 5 C -0.06 -0.63 5.15 -104.54 -0.54 -1.17 16 6 C -0.11 -1.22 9.68 -39.64 -0.38 -1.61 16 7 C -0.06 -0.84 9.59 -39.18 -0.38 -1.21 16 8 C -0.12 -1.75 5.87 -104.97 -0.62 -2.36 16 9 C 0.57 10.43 7.81 -12.33 -0.10 10.34 16 10 O -0.55 -11.66 16.67 5.32 0.09 -11.58 16 11 N -0.60 -11.00 3.33 -175.17 -0.58 -11.58 16 12 C 0.09 1.48 4.87 -3.07 -0.01 1.47 16 13 C -0.13 -2.48 4.77 -24.90 -0.12 -2.59 16 14 C 0.22 4.67 0.70 -89.62 -0.06 4.61 16 15 O -0.57 -12.17 10.46 -35.23 -0.37 -12.54 16 16 C -0.55 -14.22 8.84 -34.44 -0.30 -14.53 16 17 H 0.08 2.25 8.04 -52.49 -0.42 1.82 16 18 C 0.09 2.38 5.45 -17.82 -0.10 2.28 16 19 N -0.88 -25.56 13.96 55.43 0.77 -24.79 16 20 Si 0.87 20.25 24.17 -169.99 -4.11 16.14 16 21 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 22 H -0.30 -7.16 7.11 56.52 0.40 -6.76 16 23 H -0.22 -5.01 5.17 56.52 0.29 -4.72 16 24 C 0.09 1.90 6.07 -2.53 -0.02 1.88 16 25 C -0.12 -1.57 8.60 -39.18 -0.34 -1.91 16 26 C -0.11 -1.19 9.68 -39.64 -0.38 -1.57 16 27 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 28 H 0.07 0.38 8.14 -51.92 -0.42 -0.04 16 29 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.08 0.41 8.14 -51.92 -0.42 -0.01 16 32 H 0.09 0.61 8.08 -51.92 -0.42 0.19 16 33 H 0.09 0.60 8.08 -51.93 -0.42 0.18 16 34 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 35 H 0.14 1.81 7.67 -52.48 -0.40 1.41 16 36 H 0.07 0.95 6.81 -51.93 -0.35 0.60 16 37 H 0.07 1.09 6.66 -51.93 -0.35 0.75 16 38 H 0.09 1.75 8.03 -51.92 -0.42 1.34 16 39 H 0.08 1.48 4.99 -51.93 -0.26 1.22 16 40 H 0.37 6.93 9.06 45.56 0.41 7.35 16 41 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 42 H 0.07 1.46 8.09 -51.93 -0.42 1.03 16 43 H 0.08 1.56 8.03 -51.93 -0.42 1.15 16 44 H 0.17 1.99 2.77 -57.08 -0.16 1.84 16 45 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 LS Contribution 370.86 15.07 5.59 5.59 Total: -1.00 -31.81 370.86 -9.28 -41.09 By element: Atomic # 1 Polarization: 15.26 SS G_CDS: -5.83 Total: 9.44 kcal Atomic # 6 Polarization: -4.69 SS G_CDS: -2.51 Total: -7.20 kcal Atomic # 7 Polarization: -36.56 SS G_CDS: 0.19 Total: -36.37 kcal Atomic # 8 Polarization: -23.83 SS G_CDS: -0.28 Total: -24.11 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -4.11 Total: 16.14 kcal Atomic # 16 Polarization: -2.25 SS G_CDS: -2.33 Total: -4.58 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -31.81 -9.28 -41.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592841271.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.941 kcal (2) G-P(sol) polarization free energy of solvation -31.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds