Wall clock time and date at job start Tue Mar 31 2020 18:30:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 S 1.81403 * 109.46954 * 2 1 4 4 C 1.81407 * 102.99835 * 179.97438 * 3 2 1 5 5 C 1.50697 * 109.47196 * 179.97438 * 4 3 2 6 6 C 1.38350 * 119.85384 * 89.99938 * 5 4 3 7 7 C 1.37960 * 120.14937 * 179.97438 * 6 5 4 8 8 C 1.39578 * 119.84916 * 0.03097 * 7 6 5 9 9 C 1.47844 * 120.14432 * 179.97438 * 8 7 6 10 10 O 1.21554 * 119.99873 * 352.51298 * 9 8 7 11 11 N 1.34780 * 119.99834 * 172.50869 * 9 8 7 12 12 C 1.47018 * 125.64922 * 5.23646 * 11 9 8 13 13 C 1.54324 * 107.26888 * 181.02390 * 12 11 9 14 14 C 1.55154 * 102.94467 * 22.19045 * 13 12 11 15 15 O 1.42902 * 111.00483 * 82.57603 * 14 13 12 16 16 C 1.50707 * 111.00467 * 206.42511 * 14 13 12 17 17 H 1.07993 * 119.99926 * 120.78646 * 16 14 13 18 18 C 1.37870 * 119.99911 * 300.79259 * 16 14 13 19 19 N 1.31510 * 120.00190 * 177.89969 * 18 16 14 20 20 Si 1.86806 * 120.00262 * 357.89297 * 18 16 14 21 21 H 1.48504 * 109.46726 * 93.61346 * 20 18 16 22 22 H 1.48496 * 109.47442 * 213.61497 * 20 18 16 23 23 H 1.48500 * 109.46842 * 333.61794 * 20 18 16 24 24 C 1.47430 * 125.64618 * 185.19010 * 11 9 8 25 25 C 1.39580 * 119.71039 * 0.24302 * 8 7 6 26 26 C 1.37958 * 119.85253 * 359.47665 * 25 8 7 27 27 H 1.08997 * 109.47888 * 300.00864 * 1 2 3 28 28 H 1.09007 * 109.46888 * 60.00744 * 1 2 3 29 29 H 1.09004 * 109.47171 * 180.02562 * 1 2 3 30 30 H 1.08988 * 109.47765 * 239.99336 * 2 1 3 31 31 H 1.09007 * 109.46888 * 119.99256 * 2 1 3 32 32 H 1.09002 * 109.46539 * 59.99891 * 4 3 2 33 33 H 1.08994 * 109.47453 * 299.99880 * 4 3 2 34 34 H 1.07998 * 119.93023 * 359.97438 * 6 5 4 35 35 H 1.08004 * 120.07741 * 179.97438 * 7 6 5 36 36 H 1.09001 * 109.88417 * 61.60684 * 12 11 9 37 37 H 1.09001 * 109.88171 * 300.43844 * 12 11 9 38 38 H 1.09007 * 110.71831 * 263.82762 * 13 12 11 39 39 H 1.08996 * 110.72040 * 140.56060 * 13 12 11 40 40 H 0.96700 * 113.99770 * 180.02562 * 15 14 13 41 41 H 0.97000 * 120.00759 * 179.97438 * 19 18 16 42 42 H 1.09006 * 110.36354 * 37.07431 * 24 11 9 43 43 H 1.08998 * 110.36592 * 274.74877 * 24 11 9 44 44 H 1.07997 * 120.07087 * 179.72849 * 25 8 7 45 45 H 1.08001 * 119.92689 * 180.27000 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1346 1.7103 0.0000 4 6 3.9371 1.5058 0.0008 5 6 4.5964 2.8610 0.0002 6 6 4.8972 3.4810 1.1999 7 6 5.5012 4.7213 1.2065 8 6 5.8082 5.3509 -0.0008 9 6 6.4550 6.6804 -0.0013 10 8 6.5972 7.2875 1.0421 11 7 6.8870 7.2191 -1.1588 12 6 6.6836 6.6482 -2.4982 13 6 7.3702 7.5922 -3.5077 14 6 8.4066 8.3439 -2.6312 15 8 9.5957 7.5688 -2.4658 16 6 8.7235 9.6982 -3.2113 17 1 8.5436 10.5902 -2.6298 18 6 9.2432 9.7984 -4.4844 19 7 9.4811 10.9818 -5.0063 20 14 9.6095 8.2531 -5.4681 21 1 8.4407 7.9213 -6.3220 22 1 10.7999 8.4827 -6.3256 23 1 9.8789 7.1269 -4.5384 24 6 7.6410 8.4791 -1.2914 25 6 5.4968 4.7224 -1.2076 26 6 4.8981 3.4796 -1.2000 27 1 -0.3635 0.5139 0.8898 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0277 0.0005 30 1 1.8934 -0.5139 -0.8898 31 1 1.8933 -0.5138 0.8901 32 1 4.2405 0.9542 -0.8890 33 1 4.2399 0.9545 0.8909 34 1 4.6587 2.9930 2.1333 35 1 5.7352 5.2044 2.1437 36 1 5.6175 6.5846 -2.7161 37 1 7.1348 5.6573 -2.5512 38 1 6.6495 8.2890 -3.9358 39 1 7.8691 7.0219 -4.2912 40 1 10.2726 7.9978 -1.9246 41 1 9.8471 11.0524 -5.9019 42 1 8.3415 8.5909 -0.4638 43 1 6.9579 9.3277 -1.3287 44 1 5.7278 5.2063 -2.1451 45 1 4.6606 2.9903 -2.1331 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592841271.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:30:06 Heat of formation + Delta-G solvation = -53.135533 kcal Electronic energy + Delta-G solvation = -26126.118206 eV Core-core repulsion = 22427.820463 eV Total energy + Delta-G solvation = -3698.297744 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.134 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -41.69014 -39.95616 -38.93283 -36.37675 -34.51992 -34.05718 -33.62463 -32.25804 -31.88983 -30.14773 -28.80525 -26.96079 -25.06806 -24.32345 -23.57614 -22.55639 -21.64956 -21.05794 -19.37624 -18.47698 -17.55635 -17.24934 -16.98394 -16.72758 -16.66749 -16.23220 -16.03112 -15.66577 -15.56840 -15.33925 -15.03019 -14.90730 -14.76940 -14.54763 -14.12809 -13.95765 -13.72792 -13.57864 -13.46939 -13.18000 -13.12097 -12.83732 -12.67478 -12.38592 -12.35590 -12.27547 -12.20604 -11.88538 -11.68029 -11.02951 -10.91778 -10.87677 -10.80875 -10.38099 -10.00308 -9.84041 -9.57025 -8.67238 -8.35748 -6.52647 -0.40853 0.37992 0.80397 1.38487 1.48384 1.61664 1.71891 1.84860 1.92098 2.40313 2.85200 2.99606 3.32821 3.50609 3.63911 3.67325 3.84010 3.98997 4.00721 4.06887 4.11012 4.13832 4.16176 4.35250 4.38171 4.43486 4.54608 4.55831 4.57553 4.73609 4.78719 4.89060 4.92748 4.93204 5.01071 5.02207 5.10377 5.24613 5.25085 5.33426 5.41467 5.45089 5.51072 5.85665 6.06336 6.45417 6.58883 7.00155 7.11059 7.27915 8.78233 Molecular weight = 335.13amu Principal moments of inertia in cm(-1) A = 0.021164 B = 0.002440 C = 0.002283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.667780 B =11473.460230 C =12260.338325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.082 4.082 3 S -0.305 6.305 4 C -0.036 4.036 5 C -0.052 4.052 6 C -0.109 4.109 7 C -0.074 4.074 8 C -0.142 4.142 9 C 0.561 3.439 10 O -0.590 6.590 11 N -0.603 5.603 12 C 0.097 3.903 13 C -0.131 4.131 14 C 0.217 3.783 15 O -0.572 6.572 16 C -0.552 4.552 17 H 0.037 0.963 18 C 0.036 3.964 19 N -0.935 5.935 20 Si 0.934 3.066 21 H -0.267 1.267 22 H -0.309 1.309 23 H -0.206 1.206 24 C 0.099 3.901 25 C -0.121 4.121 26 C -0.107 4.107 27 H 0.057 0.943 28 H 0.058 0.942 29 H 0.089 0.911 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.110 0.890 33 H 0.108 0.892 34 H 0.151 0.849 35 H 0.126 0.874 36 H 0.105 0.895 37 H 0.097 0.903 38 H 0.088 0.912 39 H 0.083 0.917 40 H 0.375 0.625 41 H 0.269 0.731 42 H 0.059 0.941 43 H 0.061 0.939 44 H 0.173 0.827 45 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.570 -27.120 6.816 31.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.230 4.230 3 S -0.077 6.077 4 C -0.183 4.183 5 C -0.054 4.054 6 C -0.129 4.129 7 C -0.093 4.093 8 C -0.146 4.146 9 C 0.353 3.647 10 O -0.473 6.473 11 N -0.334 5.334 12 C -0.024 4.024 13 C -0.169 4.169 14 C 0.176 3.824 15 O -0.379 6.379 16 C -0.589 4.589 17 H 0.055 0.945 18 C -0.164 4.164 19 N -0.573 5.573 20 Si 0.759 3.241 21 H -0.192 1.192 22 H -0.237 1.237 23 H -0.128 1.128 24 C -0.023 4.023 25 C -0.139 4.139 26 C -0.126 4.126 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.108 0.892 30 H 0.111 0.889 31 H 0.110 0.890 32 H 0.129 0.871 33 H 0.126 0.874 34 H 0.168 0.832 35 H 0.144 0.856 36 H 0.123 0.877 37 H 0.115 0.885 38 H 0.107 0.893 39 H 0.101 0.899 40 H 0.223 0.777 41 H 0.077 0.923 42 H 0.078 0.922 43 H 0.079 0.921 44 H 0.189 0.811 45 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -15.441 -26.283 6.920 31.259 hybrid contribution 1.542 0.090 -0.036 1.545 sum -13.899 -26.193 6.884 30.441 Atomic orbital electron populations 1.21531 0.91917 1.03497 1.02622 1.23393 1.00387 0.93211 1.05985 1.87596 1.06064 1.15766 1.98245 1.22314 0.92038 0.96349 1.07642 1.19681 0.96727 0.95382 0.93574 1.21170 0.98481 0.94223 0.98988 1.21275 0.95949 0.95006 0.97070 1.19856 1.04515 0.94056 0.96143 1.18550 0.78175 0.86145 0.81844 1.90705 1.59830 1.64305 1.32423 1.48439 1.54254 1.23961 1.06703 1.22740 1.01315 0.97778 0.80581 1.23021 0.97858 0.98367 0.97650 1.19959 0.83336 0.88929 0.90130 1.86429 1.28138 1.48743 1.74632 1.21317 1.44955 0.91905 1.00758 0.94458 1.25797 0.93082 0.99183 0.98386 1.70059 1.44356 1.25980 1.16935 0.86166 0.77323 0.82262 0.78380 1.19242 1.23702 1.12831 1.22773 0.94793 0.85511 0.99271 1.22890 0.96154 0.95799 0.99048 1.21322 0.97988 0.94491 0.98826 0.92385 0.92336 0.89192 0.88902 0.88979 0.87114 0.87402 0.83174 0.85622 0.87740 0.88512 0.89320 0.89896 0.77662 0.92258 0.92232 0.92070 0.81067 0.82598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.11 9.92 71.98 0.71 -0.40 16 2 C -0.08 -0.71 6.66 71.98 0.48 -0.23 16 3 S -0.30 -4.60 21.72 -56.49 -1.23 -5.83 16 4 C -0.04 -0.42 6.06 71.24 0.43 0.01 16 5 C -0.05 -0.88 5.15 -19.81 -0.10 -0.99 16 6 C -0.11 -2.11 9.68 22.23 0.22 -1.90 16 7 C -0.07 -1.91 9.59 22.53 0.22 -1.70 16 8 C -0.14 -4.12 5.87 -20.09 -0.12 -4.24 16 9 C 0.56 20.77 7.81 86.79 0.68 21.45 16 10 O -0.59 -26.03 16.67 -3.88 -0.06 -26.10 16 11 N -0.60 -21.77 3.33 -826.39 -2.75 -24.52 16 12 C 0.10 2.84 4.87 86.73 0.42 3.27 16 13 C -0.13 -4.77 4.77 31.78 0.15 -4.62 16 14 C 0.22 9.34 0.70 -10.15 -0.01 9.33 16 15 O -0.57 -23.64 10.46 -148.98 -1.56 -25.20 16 16 C -0.55 -29.33 8.84 25.60 0.23 -29.11 16 17 H 0.04 2.24 8.04 -2.91 -0.02 2.21 16 18 C 0.04 1.97 5.45 84.65 0.46 2.43 16 19 N -0.94 -55.74 13.96 21.44 0.30 -55.44 16 20 Si 0.93 41.43 24.17 68.60 1.66 43.09 16 21 H -0.27 -11.04 7.11 99.48 0.71 -10.34 16 22 H -0.31 -14.22 7.11 99.48 0.71 -13.51 16 23 H -0.21 -8.56 5.17 99.48 0.51 -8.05 16 24 C 0.10 4.13 6.07 86.85 0.53 4.66 16 25 C -0.12 -2.75 8.60 22.53 0.19 -2.56 16 26 C -0.11 -1.89 9.68 22.23 0.22 -1.68 16 27 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 28 H 0.06 0.56 8.14 -2.38 -0.02 0.55 16 29 H 0.09 0.40 8.14 -2.39 -0.02 0.38 16 30 H 0.09 0.60 8.14 -2.40 -0.02 0.58 16 31 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.11 0.91 8.08 -2.39 -0.02 0.89 16 33 H 0.11 0.93 8.08 -2.39 -0.02 0.91 16 34 H 0.15 2.17 8.06 -2.91 -0.02 2.14 16 35 H 0.13 3.42 7.67 -2.91 -0.02 3.40 16 36 H 0.10 2.42 6.81 -2.39 -0.02 2.40 16 37 H 0.10 2.46 6.66 -2.39 -0.02 2.45 16 38 H 0.09 3.26 8.03 -2.38 -0.02 3.24 16 39 H 0.08 2.92 4.99 -2.39 -0.01 2.91 16 40 H 0.38 14.06 9.06 -74.06 -0.67 13.39 16 41 H 0.27 15.05 8.31 -92.71 -0.77 14.28 16 42 H 0.06 2.56 8.09 -2.38 -0.02 2.54 16 43 H 0.06 2.67 8.03 -2.39 -0.02 2.65 16 44 H 0.17 3.49 2.77 -7.23 -0.02 3.47 16 45 H 0.16 1.91 8.06 -2.91 -0.02 1.88 16 Total: -1.00 -71.96 370.86 1.20 -70.76 By element: Atomic # 1 Polarization: 29.36 SS G_CDS: 0.14 Total: 29.49 kcal Atomic # 6 Polarization: -10.96 SS G_CDS: 4.70 Total: -6.26 kcal Atomic # 7 Polarization: -77.51 SS G_CDS: -2.45 Total: -79.96 kcal Atomic # 8 Polarization: -49.67 SS G_CDS: -1.62 Total: -51.30 kcal Atomic # 14 Polarization: 41.43 SS G_CDS: 1.66 Total: 43.09 kcal Atomic # 16 Polarization: -4.60 SS G_CDS: -1.23 Total: -5.83 kcal Total: -71.96 1.20 -70.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592841271.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.627 kcal (2) G-P(sol) polarization free energy of solvation -71.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds