Wall clock time and date at job start Tue Mar 31 2020 18:29:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 S 1.81398 * 109.47199 * 2 1 4 4 C 1.76199 * 103.00071 * 179.97438 * 3 2 1 5 5 C 1.38971 * 120.07734 * 359.72976 * 4 3 2 6 6 C 1.38088 * 119.91469 * 179.72489 * 5 4 3 7 7 C 1.38305 * 120.08101 * 0.56802 * 6 5 4 8 8 C 1.50696 * 119.92157 * 179.70574 * 7 6 5 9 9 C 1.50696 * 109.46926 * 269.97769 * 8 7 6 10 10 O 1.21277 * 120.00250 * 0.02562 * 9 8 7 11 11 N 1.34784 * 120.00126 * 179.97438 * 9 8 7 12 12 C 1.47021 * 125.64700 * 0.02562 * 11 9 8 13 13 C 1.54316 * 107.27086 * 181.01905 * 12 11 9 14 14 C 1.55155 * 102.94325 * 22.19843 * 13 12 11 15 15 O 1.42897 * 111.00578 * 82.56695 * 14 13 12 16 16 C 1.50705 * 111.00260 * 206.42259 * 14 13 12 17 17 H 1.08000 * 119.99739 * 118.54229 * 16 14 13 18 18 C 1.37875 * 119.99984 * 298.54209 * 16 14 13 19 19 N 1.31518 * 119.99971 * 0.02562 * 18 16 14 20 20 Si 1.86803 * 120.00022 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47028 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.47247 * 120.00039 * 20 18 16 23 23 H 1.48503 * 109.46756 * 239.99952 * 20 18 16 24 24 C 1.47422 * 125.64711 * 179.71717 * 11 9 8 25 25 C 1.38306 * 120.15798 * 359.68015 * 7 6 5 26 26 C 1.38081 * 120.08246 * 0.04523 * 25 7 6 27 27 H 1.08990 * 109.47017 * 300.00128 * 1 2 3 28 28 H 1.09000 * 109.46988 * 60.00250 * 1 2 3 29 29 H 1.09000 * 109.46957 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46864 * 240.00156 * 2 1 3 31 31 H 1.09000 * 109.46988 * 119.99750 * 2 1 3 32 32 H 1.07992 * 120.04380 * 359.97438 * 5 4 3 33 33 H 1.08001 * 119.95934 * 180.27168 * 6 5 4 34 34 H 1.09002 * 109.47116 * 29.97553 * 8 7 6 35 35 H 1.08998 * 109.47226 * 149.97516 * 8 7 6 36 36 H 1.08996 * 109.88405 * 300.44080 * 12 11 9 37 37 H 1.09003 * 109.88023 * 61.45136 * 12 11 9 38 38 H 1.09004 * 110.71922 * 140.55536 * 13 12 11 39 39 H 1.08998 * 110.72396 * 263.82842 * 13 12 11 40 40 H 0.96695 * 113.99740 * 61.46076 * 15 14 13 41 41 H 0.97000 * 120.00138 * 180.02562 * 19 18 16 42 42 H 1.09004 * 110.36437 * 274.74291 * 24 11 9 43 43 H 1.08997 * 110.37179 * 37.07106 * 24 11 9 44 44 H 1.08005 * 119.95464 * 180.02562 * 25 7 6 45 45 H 1.07998 * 120.03928 * 179.97438 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 16 2.1347 1.7102 0.0000 4 6 3.8855 1.5116 0.0008 5 6 4.4420 0.2382 0.0069 6 6 5.8145 0.0865 0.0017 7 6 6.6351 1.1998 0.0023 8 6 8.1324 1.0300 0.0034 9 6 8.6306 0.9739 1.4245 10 8 7.8468 1.0625 2.3458 11 7 9.9470 0.8241 1.6718 12 6 11.0017 0.7042 0.6546 13 6 12.3403 0.5255 1.4014 14 6 11.8960 -0.0123 2.7873 15 8 11.6717 -1.4228 2.7415 16 6 12.9043 0.3380 3.8511 17 1 12.6157 0.9616 4.6843 18 6 14.1953 -0.1377 3.7607 19 7 14.5468 -0.8967 2.7458 20 14 15.4449 0.2958 5.0798 21 1 14.8033 1.1565 6.1057 22 1 15.9428 -0.9490 5.7183 23 1 16.5823 1.0250 4.4634 24 6 10.5685 0.7599 3.0071 25 6 6.0847 2.4686 0.0015 26 6 4.7131 2.6281 0.0009 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 3.8019 -0.6315 0.0116 33 1 6.2478 -0.9028 0.0020 34 1 8.3935 0.1045 -0.5099 35 1 8.5941 1.8731 -0.5104 36 1 10.8108 -0.1635 0.0231 37 1 11.0326 1.6069 0.0445 38 1 12.9728 -0.2006 0.8907 39 1 12.8546 1.4809 1.5052 40 1 12.4561 -1.9384 2.5096 41 1 15.4549 -1.2317 2.6824 42 1 10.7685 1.7640 3.3811 43 1 9.9249 0.2174 3.6995 44 1 6.7285 3.3358 0.0016 45 1 4.2841 3.6192 0.0007 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592844752.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:52 Heat of formation + Delta-G solvation = -68.422912 kcal Electronic energy + Delta-G solvation = -25830.333359 eV Core-core repulsion = 22131.372705 eV Total energy + Delta-G solvation = -3698.960654 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.134 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -39.89300 -38.83160 -37.16526 -34.29604 -33.39265 -32.84830 -32.25787 -31.01833 -29.94530 -28.57742 -27.49025 -25.00603 -24.24359 -22.59607 -22.39343 -21.59283 -19.78788 -18.76214 -17.66993 -17.23083 -16.63692 -16.24294 -15.79196 -15.27088 -15.24122 -15.00371 -14.90931 -14.67849 -14.22861 -13.92101 -13.70191 -13.56058 -13.15944 -12.89292 -12.68837 -12.47820 -12.26087 -12.17034 -11.94673 -11.83715 -11.64982 -11.38103 -11.32781 -11.29512 -11.10475 -10.92867 -10.65008 -10.47779 -10.38822 -10.06201 -9.78807 -9.44686 -9.27326 -9.02358 -8.71940 -8.25663 -8.00570 -7.51205 -6.31892 -4.39712 1.10763 1.29286 1.33691 2.19830 3.06672 3.16537 3.25856 3.30172 3.41459 3.79926 4.24469 4.49176 4.51615 4.68700 4.71643 4.82615 4.92866 4.96696 5.07755 5.19992 5.28951 5.31231 5.34994 5.48303 5.52471 5.53199 5.63681 5.69632 5.74124 5.82089 5.95217 5.98779 6.15997 6.20041 6.28401 6.40957 6.55071 6.63321 6.82915 6.86115 6.94169 7.26113 7.30914 7.70195 7.98805 8.12305 8.61705 8.65527 9.27274 9.35993 10.75534 Molecular weight = 335.13amu Principal moments of inertia in cm(-1) A = 0.032633 B = 0.002002 C = 0.001987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.831104 B =13979.167739 C =14086.167087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.111 4.111 3 S -0.129 6.129 4 C -0.087 4.087 5 C -0.130 4.130 6 C -0.085 4.085 7 C -0.059 4.059 8 C -0.099 4.099 9 C 0.524 3.476 10 O -0.547 6.547 11 N -0.608 5.608 12 C 0.098 3.902 13 C -0.136 4.136 14 C 0.247 3.753 15 O -0.582 6.582 16 C -0.534 4.534 17 H 0.065 0.935 18 C 0.072 3.928 19 N -0.895 5.895 20 Si 0.902 3.098 21 H -0.271 1.271 22 H -0.282 1.282 23 H -0.282 1.282 24 C 0.120 3.880 25 C -0.087 4.087 26 C -0.098 4.098 27 H 0.066 0.934 28 H 0.065 0.935 29 H 0.074 0.926 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.121 0.879 33 H 0.125 0.875 34 H 0.101 0.899 35 H 0.100 0.900 36 H 0.058 0.942 37 H 0.053 0.947 38 H 0.086 0.914 39 H 0.068 0.932 40 H 0.380 0.620 41 H 0.267 0.733 42 H 0.071 0.929 43 H 0.069 0.931 44 H 0.126 0.874 45 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.364 2.749 -11.034 21.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.259 4.259 3 S 0.113 5.887 4 C -0.200 4.200 5 C -0.154 4.154 6 C -0.105 4.105 7 C -0.062 4.062 8 C -0.139 4.139 9 C 0.311 3.689 10 O -0.425 6.425 11 N -0.341 5.341 12 C -0.025 4.025 13 C -0.175 4.175 14 C 0.207 3.793 15 O -0.391 6.391 16 C -0.573 4.573 17 H 0.083 0.917 18 C -0.130 4.130 19 N -0.535 5.535 20 Si 0.730 3.270 21 H -0.196 1.196 22 H -0.208 1.208 23 H -0.208 1.208 24 C -0.001 4.001 25 C -0.107 4.107 26 C -0.122 4.122 27 H 0.085 0.915 28 H 0.084 0.916 29 H 0.092 0.908 30 H 0.106 0.894 31 H 0.107 0.893 32 H 0.139 0.861 33 H 0.142 0.858 34 H 0.119 0.881 35 H 0.118 0.882 36 H 0.076 0.924 37 H 0.072 0.928 38 H 0.105 0.895 39 H 0.087 0.913 40 H 0.230 0.770 41 H 0.077 0.923 42 H 0.089 0.911 43 H 0.088 0.912 44 H 0.144 0.856 45 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -20.101 3.858 -10.474 22.992 hybrid contribution 2.360 -1.147 0.452 2.663 sum -17.741 2.710 -10.022 20.556 Atomic orbital electron populations 1.21516 0.91830 1.02933 1.03270 1.23590 1.00398 0.96201 1.05700 1.85400 0.98438 1.11837 1.93004 1.21608 0.96258 0.96484 1.05604 1.21045 0.95614 0.95357 1.03377 1.20898 0.92750 0.98525 0.98327 1.19389 0.94063 0.93399 0.99299 1.20666 0.92582 1.04987 0.95691 1.19992 0.80968 0.77176 0.90722 1.90690 1.54406 1.51002 1.46428 1.48637 1.05392 1.70486 1.09585 1.22204 0.89533 0.99511 0.91271 1.23174 0.93094 1.02424 0.98787 1.19661 0.88941 0.79351 0.91370 1.86139 1.40386 1.19177 1.93384 1.21487 0.94654 1.32272 1.08851 0.91671 1.24990 0.98271 0.94088 0.95668 1.69723 1.19770 1.34279 1.29682 0.86369 0.80722 0.78383 0.81553 1.19565 1.20774 1.20835 1.22408 0.94707 0.99734 0.83263 1.20916 0.94341 0.96823 0.98579 1.20658 0.92864 0.97207 1.01437 0.91514 0.91586 0.90751 0.89425 0.89327 0.86071 0.85750 0.88109 0.88165 0.92397 0.92824 0.89499 0.91329 0.77003 0.92287 0.91068 0.91219 0.85587 0.85614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.80 9.92 37.16 0.37 -0.43 16 2 C -0.11 -0.84 5.05 37.16 0.19 -0.66 16 3 S -0.13 -1.34 21.92 -107.50 -2.36 -3.70 16 4 C -0.09 -1.08 6.11 -39.04 -0.24 -1.32 16 5 C -0.13 -1.58 9.36 -39.36 -0.37 -1.95 16 6 C -0.09 -1.12 9.69 -39.61 -0.38 -1.50 16 7 C -0.06 -0.80 4.38 -104.57 -0.46 -1.26 16 8 C -0.10 -1.33 5.02 -29.04 -0.15 -1.47 16 9 C 0.52 9.62 7.84 -10.98 -0.09 9.53 16 10 O -0.55 -12.02 16.29 5.56 0.09 -11.93 16 11 N -0.61 -11.71 3.32 -170.39 -0.57 -12.28 16 12 C 0.10 1.67 6.48 -3.07 -0.02 1.65 16 13 C -0.14 -2.82 5.38 -24.90 -0.13 -2.95 16 14 C 0.25 5.84 0.87 -89.50 -0.08 5.76 16 15 O -0.58 -14.54 13.17 -35.23 -0.46 -15.00 16 16 C -0.53 -13.71 8.27 -34.44 -0.28 -14.00 16 17 H 0.07 1.68 7.79 -52.49 -0.41 1.27 16 18 C 0.07 1.83 5.29 -17.82 -0.09 1.73 16 19 N -0.90 -22.56 10.76 55.43 0.60 -21.96 16 20 Si 0.90 19.95 29.54 -169.99 -5.02 14.93 16 21 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 22 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 23 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 24 C 0.12 2.67 6.09 -2.41 -0.01 2.65 16 25 C -0.09 -1.11 9.69 -39.61 -0.38 -1.50 16 26 C -0.10 -1.22 9.79 -39.37 -0.39 -1.60 16 27 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.09 0.61 7.76 -51.92 -0.40 0.20 16 31 H 0.09 0.68 7.73 -51.92 -0.40 0.28 16 32 H 0.12 1.20 5.88 -52.49 -0.31 0.90 16 33 H 0.12 1.47 8.06 -52.49 -0.42 1.05 16 34 H 0.10 1.18 8.08 -51.93 -0.42 0.76 16 35 H 0.10 1.10 8.08 -51.93 -0.42 0.68 16 36 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.09 1.88 7.55 -51.93 -0.39 1.49 16 39 H 0.07 1.44 8.03 -51.93 -0.42 1.02 16 40 H 0.38 9.42 7.57 45.56 0.34 9.77 16 41 H 0.27 6.46 8.31 -40.82 -0.34 6.12 16 42 H 0.07 1.54 8.03 -51.93 -0.42 1.12 16 43 H 0.07 1.66 8.03 -51.93 -0.42 1.24 16 44 H 0.13 1.40 8.06 -52.48 -0.42 0.98 16 45 H 0.13 1.34 8.06 -52.49 -0.42 0.92 16 LS Contribution 383.32 15.07 5.78 5.78 Total: -1.00 -29.62 383.32 -10.64 -40.26 By element: Atomic # 1 Polarization: 17.38 SS G_CDS: -6.18 Total: 11.21 kcal Atomic # 6 Polarization: -4.78 SS G_CDS: -2.52 Total: -7.30 kcal Atomic # 7 Polarization: -34.27 SS G_CDS: 0.03 Total: -34.24 kcal Atomic # 8 Polarization: -26.56 SS G_CDS: -0.37 Total: -26.94 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -5.02 Total: 14.93 kcal Atomic # 16 Polarization: -1.34 SS G_CDS: -2.36 Total: -3.70 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -29.62 -10.64 -40.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592844752.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.159 kcal (2) G-P(sol) polarization free energy of solvation -29.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds