Wall clock time and date at job start Tue Mar 31 2020 18:29:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 S 1.81394 * 109.46998 * 2 1 4 4 C 1.76199 * 103.00056 * 180.02562 * 3 2 1 5 5 C 1.38975 * 120.07816 * 180.02562 * 4 3 2 6 6 C 1.38086 * 119.91892 * 179.97438 * 5 4 3 7 7 C 1.38310 * 120.07752 * 359.97438 * 6 5 4 8 8 C 1.50699 * 119.91812 * 179.97438 * 7 6 5 9 9 C 1.50708 * 109.47059 * 270.02451 * 8 7 6 10 10 O 1.21280 * 119.99956 * 0.02562 * 9 8 7 11 11 N 1.34776 * 119.99897 * 180.02562 * 9 8 7 12 12 C 1.47419 * 125.64699 * 0.02606 * 11 9 8 13 13 C 1.54915 * 104.83011 * 204.09286 * 12 11 9 14 14 C 1.55152 * 101.58103 * 322.98632 * 13 12 11 15 15 O 1.42900 * 110.72397 * 276.96509 * 14 13 12 16 16 C 1.50703 * 110.72260 * 153.86669 * 14 13 12 17 17 H 1.08001 * 120.00077 * 241.46238 * 16 14 13 18 18 C 1.37871 * 119.99661 * 61.45087 * 16 14 13 19 19 N 1.31517 * 120.00243 * 0.02562 * 18 16 14 20 20 Si 1.86804 * 119.99872 * 180.02562 * 18 16 14 21 21 H 1.48494 * 109.47240 * 90.00137 * 20 18 16 22 22 H 1.48499 * 109.47110 * 210.00801 * 20 18 16 23 23 H 1.48504 * 109.47155 * 330.00094 * 20 18 16 24 24 C 1.47017 * 125.64648 * 179.71760 * 11 9 8 25 25 C 1.38301 * 120.16067 * 0.02562 * 7 6 5 26 26 C 1.38081 * 120.08205 * 359.97438 * 25 7 6 27 27 H 1.09003 * 109.47175 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47308 * 299.99697 * 1 2 3 29 29 H 1.08996 * 109.47314 * 59.99955 * 1 2 3 30 30 H 1.09000 * 109.46939 * 239.99917 * 2 1 3 31 31 H 1.09004 * 109.47160 * 119.99761 * 2 1 3 32 32 H 1.07995 * 120.04427 * 359.69664 * 5 4 3 33 33 H 1.08000 * 119.96089 * 179.97438 * 6 5 4 34 34 H 1.09001 * 109.47006 * 30.02174 * 8 7 6 35 35 H 1.08996 * 109.46845 * 150.02825 * 8 7 6 36 36 H 1.09002 * 110.37020 * 322.92461 * 12 11 9 37 37 H 1.08999 * 110.36866 * 85.25397 * 12 11 9 38 38 H 1.08997 * 111.00771 * 81.06704 * 13 12 11 39 39 H 1.09003 * 110.99831 * 204.87886 * 13 12 11 40 40 H 0.96697 * 114.00084 * 298.54639 * 15 14 13 41 41 H 0.97005 * 119.99682 * 179.97438 * 19 18 16 42 42 H 1.09005 * 109.88337 * 298.39016 * 24 11 9 43 43 H 1.08997 * 109.88412 * 59.55630 * 24 11 9 44 44 H 1.07996 * 119.95950 * 180.02562 * 25 7 6 45 45 H 1.07997 * 120.04201 * 179.97438 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1346 1.7102 0.0000 4 6 3.8854 1.5117 -0.0008 5 6 4.7130 2.6282 -0.0004 6 6 6.0846 2.4688 -0.0005 7 6 6.6350 1.1999 -0.0004 8 6 8.1324 1.0301 -0.0010 9 6 8.6309 0.9737 -1.4221 10 8 7.8475 1.0631 -2.3436 11 7 9.9474 0.8239 -1.6690 12 6 11.0045 0.7028 -0.6486 13 6 12.2982 1.1712 -1.3605 14 6 12.0888 0.6067 -2.7904 15 8 12.4817 -0.7658 -2.8548 16 6 12.8480 1.4246 -3.8032 17 1 12.3161 1.9397 -4.5894 18 6 14.2215 1.5155 -3.7258 19 7 14.8692 0.8880 -2.7685 20 14 15.1626 2.5300 -4.9806 21 1 15.2911 3.9265 -4.4922 22 1 16.5145 1.9471 -5.1750 23 1 14.4302 2.5229 -6.2725 24 6 10.5662 0.7478 -3.0004 25 6 5.8145 0.0866 -0.0007 26 6 4.4420 0.2383 -0.0007 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 4.2840 3.6192 -0.0046 33 1 6.7284 3.3359 -0.0006 34 1 8.5939 1.8734 0.5127 35 1 8.3933 0.1048 0.5125 36 1 10.7856 1.3472 0.2028 37 1 11.1032 -0.3336 -0.3257 38 1 12.3639 2.2591 -1.3756 39 1 13.1811 0.7350 -0.8931 40 1 13.4154 -0.9174 -2.6543 41 1 15.8357 0.9518 -2.7143 42 1 10.1824 -0.1189 -3.5387 43 1 10.3540 1.6585 -3.5604 44 1 6.2477 -0.9027 -0.0002 45 1 3.8019 -0.6315 -0.0013 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592844758.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:57 Heat of formation + Delta-G solvation = -68.348908 kcal Electronic energy + Delta-G solvation = -25799.544538 eV Core-core repulsion = 22100.587093 eV Total energy + Delta-G solvation = -3698.957445 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.134 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.91509 -38.85033 -37.20348 -34.33345 -33.40609 -32.86725 -32.24643 -31.03163 -29.88704 -28.61625 -27.49653 -25.00559 -24.25431 -22.61351 -22.40775 -21.65552 -19.76917 -18.75303 -17.68220 -17.28506 -16.60226 -16.25115 -15.84673 -15.27322 -15.25052 -15.07357 -14.91150 -14.65804 -14.25405 -13.93202 -13.72233 -13.57074 -13.09864 -12.92874 -12.70901 -12.47141 -12.31253 -12.08768 -11.94852 -11.84987 -11.52977 -11.41239 -11.39509 -11.30230 -11.11310 -10.90808 -10.65713 -10.51134 -10.39854 -10.14752 -9.80018 -9.46198 -9.27241 -9.03639 -8.70392 -8.26112 -8.03482 -7.52361 -6.31736 -4.39076 1.09382 1.28130 1.32344 2.18764 3.04180 3.18008 3.25707 3.29848 3.39244 3.77916 4.24819 4.47791 4.50323 4.66815 4.70133 4.81253 4.93601 4.95451 5.04142 5.18427 5.27482 5.29683 5.33813 5.46291 5.49995 5.54331 5.62606 5.70744 5.73629 5.87674 5.93860 5.97950 6.13756 6.17036 6.24276 6.42485 6.53549 6.66859 6.81632 6.87372 6.94087 7.26133 7.31689 7.70278 7.99340 8.08858 8.60407 8.64585 9.27093 9.36127 10.75789 Molecular weight = 335.13amu Principal moments of inertia in cm(-1) A = 0.031054 B = 0.002009 C = 0.001989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.430501 B =13930.758126 C =14071.152458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.111 4.111 3 S -0.128 6.128 4 C -0.087 4.087 5 C -0.098 4.098 6 C -0.086 4.086 7 C -0.059 4.059 8 C -0.099 4.099 9 C 0.522 3.478 10 O -0.546 6.546 11 N -0.609 5.609 12 C 0.093 3.907 13 C -0.134 4.134 14 C 0.246 3.754 15 O -0.586 6.586 16 C -0.534 4.534 17 H 0.064 0.936 18 C 0.072 3.928 19 N -0.896 5.896 20 Si 0.903 3.097 21 H -0.279 1.279 22 H -0.284 1.284 23 H -0.272 1.272 24 C 0.123 3.877 25 C -0.086 4.086 26 C -0.131 4.131 27 H 0.074 0.926 28 H 0.065 0.935 29 H 0.066 0.934 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.126 0.874 33 H 0.127 0.873 34 H 0.101 0.899 35 H 0.100 0.900 36 H 0.061 0.939 37 H 0.063 0.937 38 H 0.067 0.933 39 H 0.088 0.912 40 H 0.382 0.618 41 H 0.268 0.732 42 H 0.060 0.940 43 H 0.071 0.929 44 H 0.124 0.876 45 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.161 -0.892 11.236 22.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.259 4.259 3 S 0.114 5.886 4 C -0.199 4.199 5 C -0.121 4.121 6 C -0.106 4.106 7 C -0.062 4.062 8 C -0.139 4.139 9 C 0.310 3.690 10 O -0.425 6.425 11 N -0.343 5.343 12 C -0.029 4.029 13 C -0.173 4.173 14 C 0.206 3.794 15 O -0.394 6.394 16 C -0.572 4.572 17 H 0.082 0.918 18 C -0.130 4.130 19 N -0.536 5.536 20 Si 0.730 3.270 21 H -0.205 1.205 22 H -0.210 1.210 23 H -0.197 1.197 24 C 0.002 3.998 25 C -0.105 4.105 26 C -0.155 4.155 27 H 0.092 0.908 28 H 0.084 0.916 29 H 0.085 0.915 30 H 0.107 0.893 31 H 0.106 0.894 32 H 0.144 0.856 33 H 0.145 0.855 34 H 0.120 0.880 35 H 0.118 0.882 36 H 0.079 0.921 37 H 0.081 0.919 38 H 0.086 0.914 39 H 0.107 0.893 40 H 0.232 0.768 41 H 0.078 0.922 42 H 0.078 0.922 43 H 0.090 0.910 44 H 0.142 0.858 45 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -20.891 0.011 10.665 23.456 hybrid contribution 2.188 -0.540 -0.464 2.301 sum -18.703 -0.530 10.202 21.311 Atomic orbital electron populations 1.21516 0.91826 1.02929 1.03287 1.23589 1.00406 0.96226 1.05674 1.85417 0.98419 1.11794 1.92984 1.21612 0.96272 0.96484 1.05558 1.20668 0.92870 0.97235 1.01366 1.20935 0.94358 0.96871 0.98413 1.19386 0.94036 0.93411 0.99368 1.20669 0.92606 1.05007 0.95628 1.20015 0.80915 0.77295 0.90770 1.90694 1.54475 1.50906 1.46400 1.48668 1.05473 1.70527 1.09585 1.22535 0.89071 1.00334 0.90990 1.23297 0.94429 1.01076 0.98503 1.19477 0.87688 0.80630 0.91581 1.86135 1.32343 1.27262 1.93708 1.21512 0.91999 1.30423 1.13314 0.91784 1.24981 0.97540 0.95019 0.95475 1.69693 1.08880 1.42966 1.32014 0.86416 0.78977 0.79995 0.81608 1.20481 1.21002 1.19680 1.22057 0.93854 1.01030 0.82889 1.20875 0.92750 0.98454 0.98463 1.21038 0.95604 0.95351 1.03463 0.90757 0.91571 0.91513 0.89345 0.89435 0.85585 0.85518 0.88045 0.88151 0.92086 0.91901 0.91436 0.89339 0.76780 0.92215 0.92192 0.91043 0.85811 0.86086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.78 9.92 37.16 0.37 -0.41 16 2 C -0.11 -0.83 5.05 37.16 0.19 -0.64 16 3 S -0.13 -1.32 21.92 -107.50 -2.36 -3.68 16 4 C -0.09 -1.06 6.11 -39.04 -0.24 -1.30 16 5 C -0.10 -1.21 9.79 -39.36 -0.39 -1.60 16 6 C -0.09 -1.10 9.69 -39.61 -0.38 -1.49 16 7 C -0.06 -0.80 4.38 -104.57 -0.46 -1.25 16 8 C -0.10 -1.30 4.83 -29.03 -0.14 -1.44 16 9 C 0.52 9.47 7.84 -10.98 -0.09 9.38 16 10 O -0.55 -11.89 16.36 5.56 0.09 -11.79 16 11 N -0.61 -11.69 3.33 -170.51 -0.57 -12.25 16 12 C 0.09 1.60 6.68 -2.53 -0.02 1.58 16 13 C -0.13 -2.79 5.47 -24.58 -0.13 -2.93 16 14 C 0.25 5.83 0.85 -89.93 -0.08 5.75 16 15 O -0.59 -14.41 13.07 -35.23 -0.46 -14.87 16 16 C -0.53 -13.81 8.22 -34.44 -0.28 -14.09 16 17 H 0.06 1.67 7.58 -52.49 -0.40 1.28 16 18 C 0.07 1.83 5.28 -17.82 -0.09 1.74 16 19 N -0.90 -22.56 10.67 55.43 0.59 -21.96 16 20 Si 0.90 20.07 29.54 -169.99 -5.02 15.05 16 21 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 22 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 23 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 24 C 0.12 2.76 6.23 -3.06 -0.02 2.74 16 25 C -0.09 -1.09 9.69 -39.62 -0.38 -1.47 16 26 C -0.13 -1.56 9.36 -39.37 -0.37 -1.92 16 27 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 28 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 29 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.09 0.66 7.75 -51.92 -0.40 0.26 16 31 H 0.09 0.59 7.75 -51.92 -0.40 0.19 16 32 H 0.13 1.35 8.06 -52.49 -0.42 0.93 16 33 H 0.13 1.43 8.06 -52.49 -0.42 1.01 16 34 H 0.10 1.12 7.79 -51.93 -0.40 0.71 16 35 H 0.10 1.11 8.08 -51.93 -0.42 0.69 16 36 H 0.06 0.85 7.48 -51.93 -0.39 0.46 16 37 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.07 1.45 8.04 -51.93 -0.42 1.03 16 39 H 0.09 1.91 7.54 -51.93 -0.39 1.52 16 40 H 0.38 9.36 7.46 45.56 0.34 9.70 16 41 H 0.27 6.48 8.31 -40.82 -0.34 6.14 16 42 H 0.06 1.40 8.07 -51.93 -0.42 0.98 16 43 H 0.07 1.64 7.66 -51.93 -0.40 1.24 16 44 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 45 H 0.12 1.16 5.88 -52.49 -0.31 0.86 16 LS Contribution 381.73 15.07 5.75 5.75 Total: -1.00 -29.50 381.73 -10.59 -40.09 By element: Atomic # 1 Polarization: 17.12 SS G_CDS: -6.10 Total: 11.02 kcal Atomic # 6 Polarization: -4.84 SS G_CDS: -2.51 Total: -7.35 kcal Atomic # 7 Polarization: -34.24 SS G_CDS: 0.02 Total: -34.22 kcal Atomic # 8 Polarization: -26.29 SS G_CDS: -0.37 Total: -26.66 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -5.02 Total: 15.05 kcal Atomic # 16 Polarization: -1.32 SS G_CDS: -2.36 Total: -3.68 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -29.50 -10.59 -40.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592844758.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.263 kcal (2) G-P(sol) polarization free energy of solvation -29.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds