Wall clock time and date at job start Tue Mar 31 2020 18:29:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 S 1.81394 * 109.46998 * 2 1 4 4 C 1.76199 * 103.00056 * 180.02562 * 3 2 1 5 5 C 1.38975 * 120.07816 * 180.02562 * 4 3 2 6 6 C 1.38086 * 119.91892 * 179.97438 * 5 4 3 7 7 C 1.38310 * 120.07752 * 359.97438 * 6 5 4 8 8 C 1.50699 * 119.91812 * 179.97438 * 7 6 5 9 9 C 1.50708 * 109.47059 * 270.02451 * 8 7 6 10 10 O 1.21280 * 119.99956 * 0.02562 * 9 8 7 11 11 N 1.34776 * 119.99897 * 180.02562 * 9 8 7 12 12 C 1.47419 * 125.64699 * 0.02606 * 11 9 8 13 13 C 1.54915 * 104.83011 * 204.09286 * 12 11 9 14 14 C 1.55152 * 101.58103 * 322.98632 * 13 12 11 15 15 O 1.42900 * 110.72397 * 276.96509 * 14 13 12 16 16 C 1.50703 * 110.72260 * 153.86669 * 14 13 12 17 17 H 1.08001 * 120.00077 * 241.46238 * 16 14 13 18 18 C 1.37871 * 119.99661 * 61.45087 * 16 14 13 19 19 N 1.31517 * 120.00243 * 0.02562 * 18 16 14 20 20 Si 1.86804 * 119.99872 * 180.02562 * 18 16 14 21 21 H 1.48494 * 109.47240 * 90.00137 * 20 18 16 22 22 H 1.48499 * 109.47110 * 210.00801 * 20 18 16 23 23 H 1.48504 * 109.47155 * 330.00094 * 20 18 16 24 24 C 1.47017 * 125.64648 * 179.71760 * 11 9 8 25 25 C 1.38301 * 120.16067 * 0.02562 * 7 6 5 26 26 C 1.38081 * 120.08205 * 359.97438 * 25 7 6 27 27 H 1.09003 * 109.47175 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47308 * 299.99697 * 1 2 3 29 29 H 1.08996 * 109.47314 * 59.99955 * 1 2 3 30 30 H 1.09000 * 109.46939 * 239.99917 * 2 1 3 31 31 H 1.09004 * 109.47160 * 119.99761 * 2 1 3 32 32 H 1.07995 * 120.04427 * 359.69664 * 5 4 3 33 33 H 1.08000 * 119.96089 * 179.97438 * 6 5 4 34 34 H 1.09001 * 109.47006 * 30.02174 * 8 7 6 35 35 H 1.08996 * 109.46845 * 150.02825 * 8 7 6 36 36 H 1.09002 * 110.37020 * 322.92461 * 12 11 9 37 37 H 1.08999 * 110.36866 * 85.25397 * 12 11 9 38 38 H 1.08997 * 111.00771 * 81.06704 * 13 12 11 39 39 H 1.09003 * 110.99831 * 204.87886 * 13 12 11 40 40 H 0.96697 * 114.00084 * 298.54639 * 15 14 13 41 41 H 0.97005 * 119.99682 * 179.97438 * 19 18 16 42 42 H 1.09005 * 109.88337 * 298.39016 * 24 11 9 43 43 H 1.08997 * 109.88412 * 59.55630 * 24 11 9 44 44 H 1.07996 * 119.95950 * 180.02562 * 25 7 6 45 45 H 1.07997 * 120.04201 * 179.97438 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1346 1.7102 0.0000 4 6 3.8854 1.5117 -0.0008 5 6 4.7130 2.6282 -0.0004 6 6 6.0846 2.4688 -0.0005 7 6 6.6350 1.1999 -0.0004 8 6 8.1324 1.0301 -0.0010 9 6 8.6309 0.9737 -1.4221 10 8 7.8475 1.0631 -2.3436 11 7 9.9474 0.8239 -1.6690 12 6 11.0045 0.7028 -0.6486 13 6 12.2982 1.1712 -1.3605 14 6 12.0888 0.6067 -2.7904 15 8 12.4817 -0.7658 -2.8548 16 6 12.8480 1.4246 -3.8032 17 1 12.3161 1.9397 -4.5894 18 6 14.2215 1.5155 -3.7258 19 7 14.8692 0.8880 -2.7685 20 14 15.1626 2.5300 -4.9806 21 1 15.2911 3.9265 -4.4922 22 1 16.5145 1.9471 -5.1750 23 1 14.4302 2.5229 -6.2725 24 6 10.5662 0.7478 -3.0004 25 6 5.8145 0.0866 -0.0007 26 6 4.4420 0.2383 -0.0007 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 4.2840 3.6192 -0.0046 33 1 6.7284 3.3359 -0.0006 34 1 8.5939 1.8734 0.5127 35 1 8.3933 0.1048 0.5125 36 1 10.7856 1.3472 0.2028 37 1 11.1032 -0.3336 -0.3257 38 1 12.3639 2.2591 -1.3756 39 1 13.1811 0.7350 -0.8931 40 1 13.4154 -0.9174 -2.6543 41 1 15.8357 0.9518 -2.7143 42 1 10.1824 -0.1189 -3.5387 43 1 10.3540 1.6585 -3.5604 44 1 6.2477 -0.9027 -0.0002 45 1 3.8019 -0.6315 -0.0013 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592844758.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:56 Heat of formation + Delta-G solvation = -85.073780 kcal Electronic energy + Delta-G solvation = -25800.269783 eV Core-core repulsion = 22100.587093 eV Total energy + Delta-G solvation = -3699.682690 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.134 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.24280 -40.03014 -38.80801 -36.07552 -34.21008 -34.10180 -33.75071 -31.91336 -31.50193 -30.17898 -28.79229 -26.74418 -24.91155 -24.05423 -23.26248 -22.75634 -21.50605 -20.19586 -19.15492 -18.54310 -18.07645 -17.21640 -17.06228 -16.90390 -16.35965 -16.17317 -16.02813 -15.80777 -15.77651 -15.19640 -14.88774 -14.67291 -14.45449 -14.06562 -13.89573 -13.76811 -13.35831 -13.27284 -13.23737 -13.11535 -13.03658 -12.91780 -12.65747 -12.43132 -12.40051 -12.28722 -12.14837 -11.99932 -11.93525 -11.26929 -11.15107 -11.02413 -10.65406 -10.46879 -10.13915 -9.95367 -9.60672 -8.36329 -8.25080 -6.39068 0.14837 0.40401 0.53337 1.40194 1.43784 1.43923 1.52338 1.64590 2.04608 2.39207 2.72035 3.00373 3.63608 3.73824 3.79206 3.94284 3.95155 3.95350 4.00232 4.02321 4.26952 4.32092 4.37274 4.45419 4.47092 4.56223 4.59395 4.64985 4.69565 4.82416 4.84091 4.86952 4.93656 5.04163 5.18714 5.19473 5.23445 5.25813 5.31079 5.48072 5.55367 5.59192 5.76725 5.91291 6.08680 6.60325 6.67310 7.17218 7.31074 7.40796 8.80637 Molecular weight = 335.13amu Principal moments of inertia in cm(-1) A = 0.031054 B = 0.002009 C = 0.001989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.430501 B =13930.758126 C =14071.152458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.105 4.105 3 S -0.147 6.147 4 C -0.096 4.096 5 C -0.112 4.112 6 C -0.096 4.096 7 C -0.079 4.079 8 C -0.086 4.086 9 C 0.520 3.480 10 O -0.589 6.589 11 N -0.613 5.613 12 C 0.102 3.898 13 C -0.126 4.126 14 C 0.234 3.766 15 O -0.593 6.593 16 C -0.564 4.564 17 H 0.048 0.952 18 C 0.039 3.961 19 N -0.903 5.903 20 Si 0.956 3.044 21 H -0.273 1.273 22 H -0.277 1.277 23 H -0.279 1.279 24 C 0.130 3.870 25 C -0.096 4.096 26 C -0.138 4.138 27 H 0.094 0.906 28 H 0.067 0.933 29 H 0.062 0.938 30 H 0.089 0.911 31 H 0.098 0.902 32 H 0.136 0.864 33 H 0.137 0.863 34 H 0.129 0.871 35 H 0.128 0.872 36 H 0.106 0.894 37 H 0.075 0.925 38 H 0.056 0.944 39 H 0.080 0.920 40 H 0.380 0.620 41 H 0.272 0.728 42 H 0.039 0.961 43 H 0.054 0.946 44 H 0.136 0.864 45 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.806 -1.133 13.017 23.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.253 4.253 3 S 0.095 5.905 4 C -0.209 4.209 5 C -0.135 4.135 6 C -0.116 4.116 7 C -0.081 4.081 8 C -0.125 4.125 9 C 0.310 3.690 10 O -0.470 6.470 11 N -0.345 5.345 12 C -0.019 4.019 13 C -0.164 4.164 14 C 0.194 3.806 15 O -0.402 6.402 16 C -0.602 4.602 17 H 0.066 0.934 18 C -0.163 4.163 19 N -0.542 5.542 20 Si 0.782 3.218 21 H -0.199 1.199 22 H -0.203 1.203 23 H -0.205 1.205 24 C 0.007 3.993 25 C -0.116 4.116 26 C -0.161 4.161 27 H 0.112 0.888 28 H 0.086 0.914 29 H 0.081 0.919 30 H 0.108 0.892 31 H 0.116 0.884 32 H 0.154 0.846 33 H 0.155 0.845 34 H 0.147 0.853 35 H 0.146 0.854 36 H 0.124 0.876 37 H 0.093 0.907 38 H 0.075 0.925 39 H 0.099 0.901 40 H 0.230 0.770 41 H 0.081 0.919 42 H 0.058 0.942 43 H 0.073 0.927 44 H 0.154 0.846 45 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -21.538 -0.230 12.480 24.893 hybrid contribution 2.304 -0.495 -1.065 2.586 sum -19.234 -0.725 11.415 22.378 Atomic orbital electron populations 1.21543 0.90421 1.04165 1.03213 1.23715 1.01442 0.93913 1.06229 1.85474 0.97409 1.14888 1.92746 1.21867 0.97352 0.96694 1.04974 1.20904 0.93060 0.97973 1.01593 1.21164 0.94824 0.97301 0.98313 1.19530 0.94332 0.93823 1.00460 1.20690 0.92419 1.07546 0.91882 1.20985 0.79832 0.75551 0.92620 1.90673 1.55369 1.52578 1.48372 1.48740 1.06461 1.70865 1.08477 1.22585 0.86301 1.01975 0.91058 1.23072 0.96295 1.00129 0.96941 1.19609 0.87993 0.79952 0.93042 1.86119 1.32126 1.28021 1.93909 1.21714 0.92898 1.31516 1.14056 0.93399 1.25544 0.97965 0.95811 0.96937 1.69741 1.09164 1.42915 1.32366 0.85590 0.77859 0.79004 0.79336 1.19878 1.20256 1.20465 1.21734 0.93544 0.99256 0.84808 1.21144 0.93226 0.98976 0.98266 1.21308 0.95765 0.95983 1.03054 0.88758 0.91392 0.91869 0.89224 0.88385 0.84644 0.84479 0.85307 0.85428 0.87608 0.90677 0.92485 0.90129 0.77045 0.91864 0.94236 0.92722 0.84604 0.84158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.27 9.92 71.98 0.71 -0.55 16 2 C -0.10 -1.37 5.05 71.98 0.36 -1.01 16 3 S -0.15 -2.90 21.92 -56.49 -1.24 -4.14 16 4 C -0.10 -2.27 6.11 22.62 0.14 -2.13 16 5 C -0.11 -2.70 9.79 22.41 0.22 -2.48 16 6 C -0.10 -2.37 9.69 22.25 0.22 -2.15 16 7 C -0.08 -1.97 4.38 -19.83 -0.09 -2.06 16 8 C -0.09 -2.00 4.83 29.10 0.14 -1.86 16 9 C 0.52 18.18 7.84 87.66 0.69 18.87 16 10 O -0.59 -25.71 16.36 -3.03 -0.05 -25.76 16 11 N -0.61 -22.86 3.33 -811.76 -2.70 -25.56 16 12 C 0.10 3.24 6.68 86.86 0.58 3.82 16 13 C -0.13 -5.13 5.47 31.99 0.17 -4.95 16 14 C 0.23 11.21 0.85 -10.35 -0.01 11.20 16 15 O -0.59 -29.52 13.07 -148.98 -1.95 -31.47 16 16 C -0.56 -29.77 8.22 25.60 0.21 -29.56 16 17 H 0.05 2.60 7.58 -2.91 -0.02 2.58 16 18 C 0.04 1.99 5.28 84.65 0.45 2.43 16 19 N -0.90 -45.15 10.67 21.45 0.23 -44.93 16 20 Si 0.96 41.16 29.54 68.60 2.03 43.19 16 21 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 22 H -0.28 -11.56 7.11 99.48 0.71 -10.86 16 23 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 24 C 0.13 5.94 6.23 86.74 0.54 6.48 16 25 C -0.10 -2.30 9.69 22.25 0.22 -2.08 16 26 C -0.14 -3.08 9.36 22.41 0.21 -2.87 16 27 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 28 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.09 1.17 7.75 -2.39 -0.02 1.15 16 31 H 0.10 1.10 7.75 -2.39 -0.02 1.08 16 32 H 0.14 2.85 8.06 -2.91 -0.02 2.82 16 33 H 0.14 2.92 8.06 -2.91 -0.02 2.90 16 34 H 0.13 2.31 7.79 -2.39 -0.02 2.29 16 35 H 0.13 2.30 8.08 -2.39 -0.02 2.28 16 36 H 0.11 2.46 7.48 -2.39 -0.02 2.44 16 37 H 0.08 2.24 8.14 -2.39 -0.02 2.23 16 38 H 0.06 2.41 8.04 -2.39 -0.02 2.39 16 39 H 0.08 3.40 7.54 -2.39 -0.02 3.39 16 40 H 0.38 18.81 7.46 -74.06 -0.55 18.25 16 41 H 0.27 12.93 8.31 -92.70 -0.77 12.16 16 42 H 0.04 1.92 8.07 -2.38 -0.02 1.90 16 43 H 0.05 2.63 7.66 -2.39 -0.02 2.61 16 44 H 0.14 2.78 8.06 -2.91 -0.02 2.75 16 45 H 0.14 2.44 5.88 -2.91 -0.02 2.42 16 Total: -1.00 -64.86 381.73 1.53 -63.33 By element: Atomic # 1 Polarization: 33.79 SS G_CDS: 0.44 Total: 34.23 kcal Atomic # 6 Polarization: -13.65 SS G_CDS: 4.76 Total: -8.89 kcal Atomic # 7 Polarization: -68.02 SS G_CDS: -2.47 Total: -70.49 kcal Atomic # 8 Polarization: -55.23 SS G_CDS: -2.00 Total: -57.23 kcal Atomic # 14 Polarization: 41.16 SS G_CDS: 2.03 Total: 43.19 kcal Atomic # 16 Polarization: -2.90 SS G_CDS: -1.24 Total: -4.14 kcal Total: -64.86 1.53 -63.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592844758.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.741 kcal (2) G-P(sol) polarization free energy of solvation -64.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds