Wall clock time and date at job start Tue Mar 31 2020 18:06:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47000 * 2 1 4 4 C 1.53007 * 109.47002 * 119.99550 * 2 1 3 5 5 S 1.81397 * 109.47408 * 295.00154 * 4 2 1 6 6 C 1.76195 * 103.00100 * 179.97438 * 5 4 2 7 7 C 1.38976 * 120.08131 * 359.72395 * 6 5 4 8 8 C 1.38081 * 119.92029 * 179.67428 * 7 6 5 9 9 C 1.38301 * 120.07692 * 0.62674 * 8 7 6 10 10 C 1.38300 * 120.16237 * 359.67271 * 9 8 7 11 11 C 1.38081 * 120.08139 * 0.02562 * 10 9 8 12 12 C 1.50694 * 109.47380 * 239.99944 * 2 1 3 13 13 O 1.21286 * 119.99702 * 258.23079 * 12 2 1 14 14 N 1.34770 * 120.00099 * 78.22542 * 12 2 1 15 15 C 1.47023 * 125.65021 * 185.61231 * 14 12 2 16 16 C 1.54323 * 107.27452 * 181.02663 * 15 14 12 17 17 C 1.55154 * 102.94097 * 22.19182 * 16 15 14 18 18 O 1.42898 * 111.00436 * 82.57488 * 17 16 15 19 19 C 1.50701 * 111.00411 * 206.39009 * 17 16 15 20 20 H 1.07997 * 120.00216 * 24.55191 * 19 17 16 21 21 C 1.37883 * 119.99970 * 204.56023 * 19 17 16 22 22 N 1.31507 * 120.00072 * 170.73299 * 21 19 17 23 23 Si 1.86802 * 119.99640 * 350.73510 * 21 19 17 24 24 H 1.48504 * 109.47257 * 88.11521 * 23 21 19 25 25 H 1.48503 * 109.46814 * 208.11426 * 23 21 19 26 26 H 1.48504 * 109.47416 * 328.11464 * 23 21 19 27 27 C 1.47420 * 125.64761 * 5.31012 * 14 12 2 28 28 H 1.09000 * 109.47529 * 306.41119 * 1 2 3 29 29 H 1.08998 * 109.47016 * 66.40943 * 1 2 3 30 30 H 1.09003 * 109.47213 * 186.41222 * 1 2 3 31 31 H 1.08999 * 109.46967 * 175.00113 * 4 2 1 32 32 H 1.09000 * 109.46657 * 55.00311 * 4 2 1 33 33 H 1.08006 * 120.03613 * 0.02562 * 7 6 5 34 34 H 1.08001 * 119.96193 * 180.32238 * 8 7 6 35 35 H 1.08006 * 119.91793 * 179.69370 * 9 8 7 36 36 H 1.08001 * 119.95938 * 180.02562 * 10 9 8 37 37 H 1.07999 * 120.04158 * 180.02562 * 11 10 9 38 38 H 1.09005 * 109.88637 * 300.44603 * 15 14 12 39 39 H 1.09005 * 109.87796 * 61.60628 * 15 14 12 40 40 H 1.08996 * 110.72420 * 140.55852 * 16 15 14 41 41 H 1.09006 * 110.71616 * 263.65363 * 16 15 14 42 42 H 0.96702 * 113.99741 * 56.08253 * 18 17 16 43 43 H 0.97000 * 119.99565 * 179.97438 * 22 21 19 44 44 H 1.09003 * 110.36911 * 274.74112 * 27 14 12 45 45 H 1.08998 * 110.36661 * 37.06772 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2494 5 16 1.5600 0.2157 2.7267 6 6 2.2221 -0.7518 4.0420 7 6 2.9097 -1.9272 3.7644 8 6 3.4330 -2.6794 4.7974 9 6 3.2623 -2.2711 6.1077 10 6 2.5732 -1.1052 6.3881 11 6 2.0525 -0.3447 5.3599 12 6 2.0323 -0.7104 -1.2304 13 8 2.4365 -1.8511 -1.1495 14 7 2.0324 -0.0783 -2.4206 15 6 2.3823 -0.6852 -3.7132 16 6 2.2653 0.4192 -4.7848 17 6 2.4047 1.7235 -3.9561 18 8 3.7788 2.0310 -3.7124 19 6 1.7094 2.8736 -4.6380 20 1 0.8997 2.6833 -5.3268 21 6 2.1072 4.1688 -4.3826 22 7 1.6309 5.1579 -5.1066 23 14 3.3229 4.5186 -3.0081 24 1 4.7078 4.4181 -3.5346 25 1 3.0923 5.8872 -2.4798 26 1 3.1351 3.5287 -1.9172 27 6 1.6757 1.3347 -2.6431 28 1 -0.3634 0.6100 0.8270 29 1 -0.3633 0.4113 -0.9418 30 1 -0.3634 -1.0213 0.1148 31 1 3.1262 -0.7994 1.2057 32 1 1.6053 -1.7197 1.2952 33 1 3.0395 -2.2490 2.7416 34 1 3.9720 -3.5902 4.5822 35 1 3.6684 -2.8640 6.9140 36 1 2.4422 -0.7892 7.4125 37 1 1.5149 0.5658 5.5796 38 1 3.4041 -1.0634 -3.6808 39 1 1.6914 -1.4971 -3.9406 40 1 3.0719 0.3369 -5.5131 41 1 1.2949 0.3752 -5.2794 42 1 4.3138 2.1037 -4.5147 43 1 1.9105 6.0691 -4.9267 44 1 0.5971 1.4399 -2.7600 45 1 2.0303 1.9502 -1.8163 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592845910.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:06:11 Heat of formation + Delta-G solvation = -61.771218 kcal Electronic energy + Delta-G solvation = -26422.808451 eV Core-core repulsion = 22724.136235 eV Total energy + Delta-G solvation = -3698.672215 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.134 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -39.96507 -39.11947 -37.85888 -34.75252 -34.56678 -32.45890 -31.39669 -31.17043 -30.41959 -28.60580 -27.45053 -25.22342 -24.12447 -22.97941 -22.75708 -21.54371 -19.98709 -18.81549 -17.86757 -17.58534 -17.32666 -16.34841 -15.71024 -15.56111 -15.24537 -15.06791 -14.82353 -14.74371 -14.48069 -13.87339 -13.71892 -13.44992 -13.37452 -13.23278 -12.87868 -12.71273 -12.56444 -12.31293 -12.19620 -11.90123 -11.64428 -11.55480 -11.41332 -11.36240 -11.23052 -10.87299 -10.64581 -10.39055 -10.30495 -10.29490 -9.96606 -9.60700 -9.31914 -9.23697 -8.72954 -8.58405 -8.20759 -7.54861 -6.29398 -4.41796 0.97369 1.11849 1.29821 2.24449 2.84679 3.33976 3.39147 3.47047 3.47152 3.59707 4.39969 4.47596 4.60751 4.68562 4.72294 4.73690 4.84882 4.88280 5.03581 5.13841 5.18777 5.27280 5.36780 5.41384 5.47477 5.52793 5.57221 5.70993 5.72960 5.75307 5.87188 5.98193 6.03373 6.03558 6.11404 6.13469 6.24469 6.30301 6.43914 6.55932 6.64816 6.65868 6.87269 7.35054 7.87970 8.03913 8.39526 8.53615 8.73356 9.32593 10.79181 Molecular weight = 335.13amu Principal moments of inertia in cm(-1) A = 0.016996 B = 0.002877 C = 0.002654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1647.086213 B = 9728.554595 C =10547.246201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.094 4.094 3 H 0.104 0.896 4 C -0.085 4.085 5 S -0.108 6.108 6 C -0.081 4.081 7 C -0.134 4.134 8 C -0.100 4.100 9 C -0.130 4.130 10 C -0.103 4.103 11 C -0.103 4.103 12 C 0.536 3.464 13 O -0.559 6.559 14 N -0.607 5.607 15 C 0.112 3.888 16 C -0.149 4.149 17 C 0.221 3.779 18 O -0.561 6.561 19 C -0.554 4.554 20 H 0.082 0.918 21 C 0.077 3.923 22 N -0.883 5.883 23 Si 0.945 3.055 24 H -0.290 1.290 25 H -0.322 1.322 26 H -0.271 1.271 27 C 0.101 3.899 28 H 0.074 0.926 29 H 0.070 0.930 30 H 0.063 0.937 31 H 0.092 0.908 32 H 0.098 0.902 33 H 0.127 0.873 34 H 0.125 0.875 35 H 0.123 0.877 36 H 0.126 0.874 37 H 0.127 0.873 38 H 0.061 0.939 39 H 0.058 0.942 40 H 0.075 0.925 41 H 0.080 0.920 42 H 0.373 0.627 43 H 0.268 0.732 44 H 0.084 0.916 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.534 -11.892 16.399 20.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.116 4.116 3 H 0.122 0.878 4 C -0.233 4.233 5 S 0.138 5.862 6 C -0.194 4.194 7 C -0.158 4.158 8 C -0.120 4.120 9 C -0.151 4.151 10 C -0.123 4.123 11 C -0.127 4.127 12 C 0.323 3.677 13 O -0.438 6.438 14 N -0.338 5.338 15 C -0.010 4.010 16 C -0.187 4.187 17 C 0.180 3.820 18 O -0.369 6.369 19 C -0.592 4.592 20 H 0.100 0.900 21 C -0.129 4.129 22 N -0.517 5.517 23 Si 0.779 3.221 24 H -0.217 1.217 25 H -0.253 1.253 26 H -0.197 1.197 27 C -0.021 4.021 28 H 0.093 0.907 29 H 0.089 0.911 30 H 0.082 0.918 31 H 0.111 0.889 32 H 0.117 0.883 33 H 0.145 0.855 34 H 0.143 0.857 35 H 0.141 0.859 36 H 0.144 0.856 37 H 0.145 0.855 38 H 0.079 0.921 39 H 0.076 0.924 40 H 0.093 0.907 41 H 0.098 0.902 42 H 0.221 0.779 43 H 0.077 0.923 44 H 0.102 0.898 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -0.141 -11.278 16.975 20.380 hybrid contribution 1.535 -0.816 -0.041 1.739 sum 1.394 -12.094 16.934 20.856 Atomic orbital electron populations 1.21802 0.91636 1.03123 1.03559 1.20997 0.98637 1.01066 0.90950 0.87788 1.23522 1.04906 1.01827 0.93094 1.85467 1.69940 1.33813 0.97021 1.21862 1.01914 0.98362 0.97257 1.21301 0.99575 0.94732 1.00149 1.21084 0.98865 0.99435 0.92612 1.21175 1.00088 0.97186 0.96620 1.21081 0.97538 0.94869 0.98826 1.20777 1.00976 1.00376 0.90547 1.19896 0.78281 0.86124 0.83449 1.90646 1.48811 1.18650 1.85729 1.48635 1.65655 1.13263 1.06291 1.21910 0.99954 0.96226 0.82917 1.23301 1.02926 0.95611 0.96908 1.20210 0.79679 0.92144 0.89951 1.86100 1.22261 1.91591 1.36904 1.21139 1.20756 0.89286 1.27978 0.89965 1.25139 0.95988 0.95893 0.95889 1.69968 1.43497 1.00203 1.38033 0.85781 0.80218 0.74090 0.81980 1.21723 1.25319 1.19746 1.23205 0.99940 0.78829 1.00120 0.90663 0.91106 0.91783 0.88926 0.88333 0.85542 0.85742 0.85920 0.85607 0.85484 0.92062 0.92395 0.90680 0.90171 0.77875 0.92278 0.89814 0.90561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.79 8.89 37.15 0.33 -1.46 16 2 C -0.09 -1.35 2.15 -91.77 -0.20 -1.54 16 3 H 0.10 1.54 6.95 -51.93 -0.36 1.18 16 4 C -0.08 -1.11 3.14 37.16 0.12 -1.00 16 5 S -0.11 -1.33 20.86 -107.50 -2.24 -3.57 16 6 C -0.08 -0.96 6.11 -39.04 -0.24 -1.20 16 7 C -0.13 -1.52 9.36 -39.37 -0.37 -1.88 16 8 C -0.10 -0.97 10.04 -39.62 -0.40 -1.36 16 9 C -0.13 -1.12 10.04 -39.54 -0.40 -1.52 16 10 C -0.10 -0.91 10.04 -39.62 -0.40 -1.31 16 11 C -0.10 -1.07 9.79 -39.37 -0.39 -1.46 16 12 C 0.54 9.31 7.01 -10.99 -0.08 9.23 16 13 O -0.56 -10.92 16.45 5.55 0.09 -10.83 16 14 N -0.61 -10.83 3.32 -170.38 -0.57 -11.39 16 15 C 0.11 1.89 6.87 -3.06 -0.02 1.87 16 16 C -0.15 -2.58 6.11 -24.90 -0.15 -2.73 16 17 C 0.22 4.53 0.70 -89.50 -0.06 4.47 16 18 O -0.56 -11.54 8.74 -35.23 -0.31 -11.85 16 19 C -0.55 -13.72 8.87 -34.44 -0.31 -14.02 16 20 H 0.08 2.21 8.00 -52.49 -0.42 1.79 16 21 C 0.08 2.03 5.46 -17.82 -0.10 1.93 16 22 N -0.88 -25.00 13.96 55.43 0.77 -24.23 16 23 Si 0.94 22.37 24.95 -169.99 -4.24 18.13 16 24 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 25 H -0.32 -7.87 7.11 56.52 0.40 -7.47 16 26 H -0.27 -6.29 5.34 56.52 0.30 -5.99 16 27 C 0.10 1.92 5.25 -2.41 -0.01 1.91 16 28 H 0.07 0.85 7.37 -51.93 -0.38 0.47 16 29 H 0.07 0.90 7.46 -51.93 -0.39 0.51 16 30 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.09 1.26 7.76 -51.92 -0.40 0.86 16 32 H 0.10 1.28 7.66 -51.92 -0.40 0.88 16 33 H 0.13 1.42 5.88 -52.48 -0.31 1.11 16 34 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 35 H 0.12 0.76 8.06 -52.48 -0.42 0.34 16 36 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 37 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 38 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 39 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.07 1.18 8.12 -51.93 -0.42 0.76 16 41 H 0.08 1.37 7.99 -51.93 -0.41 0.96 16 42 H 0.37 6.64 9.05 45.56 0.41 7.06 16 43 H 0.27 7.19 8.31 -40.82 -0.34 6.86 16 44 H 0.08 1.54 7.70 -51.93 -0.40 1.14 16 45 H 0.08 1.52 5.27 -51.93 -0.27 1.24 16 LS Contribution 371.85 15.07 5.60 5.60 Total: -1.00 -30.35 371.85 -9.50 -39.85 By element: Atomic # 1 Polarization: 14.31 SS G_CDS: -5.95 Total: 8.36 kcal Atomic # 6 Polarization: -7.40 SS G_CDS: -2.66 Total: -10.06 kcal Atomic # 7 Polarization: -35.83 SS G_CDS: 0.21 Total: -35.63 kcal Atomic # 8 Polarization: -22.46 SS G_CDS: -0.22 Total: -22.68 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -4.24 Total: 18.13 kcal Atomic # 16 Polarization: -1.33 SS G_CDS: -2.24 Total: -3.57 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -30.35 -9.50 -39.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592845910.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.918 kcal (2) G-P(sol) polarization free energy of solvation -30.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds