Wall clock time and date at job start Tue Mar 31 2020 18:06:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47000 * 2 1 4 4 C 1.53007 * 109.47002 * 119.99550 * 2 1 3 5 5 S 1.81397 * 109.47408 * 295.00154 * 4 2 1 6 6 C 1.76195 * 103.00100 * 179.97438 * 5 4 2 7 7 C 1.38976 * 120.08131 * 359.72395 * 6 5 4 8 8 C 1.38081 * 119.92029 * 179.67428 * 7 6 5 9 9 C 1.38301 * 120.07692 * 0.62674 * 8 7 6 10 10 C 1.38300 * 120.16237 * 359.67271 * 9 8 7 11 11 C 1.38081 * 120.08139 * 0.02562 * 10 9 8 12 12 C 1.50694 * 109.47380 * 239.99944 * 2 1 3 13 13 O 1.21286 * 119.99702 * 258.23079 * 12 2 1 14 14 N 1.34770 * 120.00099 * 78.22542 * 12 2 1 15 15 C 1.47023 * 125.65021 * 185.61231 * 14 12 2 16 16 C 1.54323 * 107.27452 * 181.02663 * 15 14 12 17 17 C 1.55154 * 102.94097 * 22.19182 * 16 15 14 18 18 O 1.42898 * 111.00436 * 82.57488 * 17 16 15 19 19 C 1.50701 * 111.00411 * 206.39009 * 17 16 15 20 20 H 1.07997 * 120.00216 * 24.55191 * 19 17 16 21 21 C 1.37883 * 119.99970 * 204.56023 * 19 17 16 22 22 N 1.31507 * 120.00072 * 170.73299 * 21 19 17 23 23 Si 1.86802 * 119.99640 * 350.73510 * 21 19 17 24 24 H 1.48504 * 109.47257 * 88.11521 * 23 21 19 25 25 H 1.48503 * 109.46814 * 208.11426 * 23 21 19 26 26 H 1.48504 * 109.47416 * 328.11464 * 23 21 19 27 27 C 1.47420 * 125.64761 * 5.31012 * 14 12 2 28 28 H 1.09000 * 109.47529 * 306.41119 * 1 2 3 29 29 H 1.08998 * 109.47016 * 66.40943 * 1 2 3 30 30 H 1.09003 * 109.47213 * 186.41222 * 1 2 3 31 31 H 1.08999 * 109.46967 * 175.00113 * 4 2 1 32 32 H 1.09000 * 109.46657 * 55.00311 * 4 2 1 33 33 H 1.08006 * 120.03613 * 0.02562 * 7 6 5 34 34 H 1.08001 * 119.96193 * 180.32238 * 8 7 6 35 35 H 1.08006 * 119.91793 * 179.69370 * 9 8 7 36 36 H 1.08001 * 119.95938 * 180.02562 * 10 9 8 37 37 H 1.07999 * 120.04158 * 180.02562 * 11 10 9 38 38 H 1.09005 * 109.88637 * 300.44603 * 15 14 12 39 39 H 1.09005 * 109.87796 * 61.60628 * 15 14 12 40 40 H 1.08996 * 110.72420 * 140.55852 * 16 15 14 41 41 H 1.09006 * 110.71616 * 263.65363 * 16 15 14 42 42 H 0.96702 * 113.99741 * 56.08253 * 18 17 16 43 43 H 0.97000 * 119.99565 * 179.97438 * 22 21 19 44 44 H 1.09003 * 110.36911 * 274.74112 * 27 14 12 45 45 H 1.08998 * 110.36661 * 37.06772 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2494 5 16 1.5600 0.2157 2.7267 6 6 2.2221 -0.7518 4.0420 7 6 2.9097 -1.9272 3.7644 8 6 3.4330 -2.6794 4.7974 9 6 3.2623 -2.2711 6.1077 10 6 2.5732 -1.1052 6.3881 11 6 2.0525 -0.3447 5.3599 12 6 2.0323 -0.7104 -1.2304 13 8 2.4365 -1.8511 -1.1495 14 7 2.0324 -0.0783 -2.4206 15 6 2.3823 -0.6852 -3.7132 16 6 2.2653 0.4192 -4.7848 17 6 2.4047 1.7235 -3.9561 18 8 3.7788 2.0310 -3.7124 19 6 1.7094 2.8736 -4.6380 20 1 0.8997 2.6833 -5.3268 21 6 2.1072 4.1688 -4.3826 22 7 1.6309 5.1579 -5.1066 23 14 3.3229 4.5186 -3.0081 24 1 4.7078 4.4181 -3.5346 25 1 3.0923 5.8872 -2.4798 26 1 3.1351 3.5287 -1.9172 27 6 1.6757 1.3347 -2.6431 28 1 -0.3634 0.6100 0.8270 29 1 -0.3633 0.4113 -0.9418 30 1 -0.3634 -1.0213 0.1148 31 1 3.1262 -0.7994 1.2057 32 1 1.6053 -1.7197 1.2952 33 1 3.0395 -2.2490 2.7416 34 1 3.9720 -3.5902 4.5822 35 1 3.6684 -2.8640 6.9140 36 1 2.4422 -0.7892 7.4125 37 1 1.5149 0.5658 5.5796 38 1 3.4041 -1.0634 -3.6808 39 1 1.6914 -1.4971 -3.9406 40 1 3.0719 0.3369 -5.5131 41 1 1.2949 0.3752 -5.2794 42 1 4.3138 2.1037 -4.5147 43 1 1.9105 6.0691 -4.9267 44 1 0.5971 1.4399 -2.7600 45 1 2.0303 1.9502 -1.8163 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592845910.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:06:10 Heat of formation + Delta-G solvation = -79.983376 kcal Electronic energy + Delta-G solvation = -26423.598189 eV Core-core repulsion = 22724.136235 eV Total energy + Delta-G solvation = -3699.461954 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.134 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.38216 -39.84629 -39.38391 -36.31345 -35.75913 -34.44719 -32.20421 -31.92139 -31.81984 -30.19855 -28.47131 -26.98285 -25.46558 -23.78062 -23.58175 -22.78535 -21.59961 -20.11583 -19.43593 -18.72829 -18.60160 -17.34875 -17.10020 -16.99271 -16.67344 -16.26653 -16.05349 -15.91034 -15.54360 -15.29057 -14.83175 -14.59835 -14.45691 -14.37858 -14.18903 -13.93107 -13.89548 -13.76495 -13.59816 -13.35150 -13.09730 -12.57191 -12.49513 -12.47299 -12.37673 -12.29346 -12.08179 -12.05884 -11.97763 -11.30772 -11.24976 -10.94400 -10.73581 -10.61961 -10.34221 -9.97673 -9.66360 -8.45218 -8.34203 -6.46384 0.21741 0.35141 0.38024 1.30897 1.46852 1.49298 1.53353 1.70692 2.00601 2.43431 2.73818 2.97360 3.34756 3.41281 3.46038 3.63839 3.88764 3.93529 3.98298 4.08192 4.16438 4.21468 4.22905 4.32810 4.46031 4.48627 4.50201 4.54061 4.62936 4.72993 4.76788 4.80322 4.82252 4.96780 5.03392 5.12909 5.14755 5.24934 5.28499 5.31156 5.42707 5.51749 5.53346 5.95880 6.08624 6.45408 6.61702 6.98290 7.01015 7.32837 8.78239 Molecular weight = 335.13amu Principal moments of inertia in cm(-1) A = 0.016996 B = 0.002877 C = 0.002654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1647.086213 B = 9728.554595 C =10547.246201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.090 4.090 3 H 0.100 0.900 4 C -0.076 4.076 5 S -0.113 6.113 6 C -0.102 4.102 7 C -0.151 4.151 8 C -0.108 4.108 9 C -0.127 4.127 10 C -0.103 4.103 11 C -0.114 4.114 12 C 0.534 3.466 13 O -0.581 6.581 14 N -0.609 5.609 15 C 0.113 3.887 16 C -0.138 4.138 17 C 0.213 3.787 18 O -0.566 6.566 19 C -0.542 4.542 20 H 0.053 0.947 21 C 0.033 3.967 22 N -0.930 5.930 23 Si 0.996 3.004 24 H -0.285 1.285 25 H -0.335 1.335 26 H -0.263 1.263 27 C 0.109 3.891 28 H 0.087 0.913 29 H 0.067 0.933 30 H 0.069 0.931 31 H 0.082 0.918 32 H 0.097 0.903 33 H 0.119 0.881 34 H 0.143 0.857 35 H 0.152 0.848 36 H 0.155 0.845 37 H 0.135 0.865 38 H 0.062 0.938 39 H 0.071 0.929 40 H 0.093 0.907 41 H 0.080 0.920 42 H 0.385 0.615 43 H 0.267 0.733 44 H 0.089 0.911 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.167 -13.407 18.563 22.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.113 4.113 3 H 0.118 0.882 4 C -0.225 4.225 5 S 0.131 5.869 6 C -0.215 4.215 7 C -0.175 4.175 8 C -0.128 4.128 9 C -0.147 4.147 10 C -0.122 4.122 11 C -0.138 4.138 12 C 0.322 3.678 13 O -0.462 6.462 14 N -0.341 5.341 15 C -0.009 4.009 16 C -0.176 4.176 17 C 0.173 3.827 18 O -0.376 6.376 19 C -0.580 4.580 20 H 0.072 0.928 21 C -0.168 4.168 22 N -0.567 5.567 23 Si 0.830 3.170 24 H -0.212 1.212 25 H -0.267 1.267 26 H -0.189 1.189 27 C -0.013 4.013 28 H 0.106 0.894 29 H 0.086 0.914 30 H 0.088 0.912 31 H 0.101 0.899 32 H 0.115 0.885 33 H 0.137 0.863 34 H 0.160 0.840 35 H 0.170 0.830 36 H 0.172 0.828 37 H 0.153 0.847 38 H 0.081 0.919 39 H 0.090 0.910 40 H 0.111 0.889 41 H 0.099 0.901 42 H 0.235 0.765 43 H 0.076 0.924 44 H 0.107 0.893 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 0.505 -12.824 19.138 23.043 hybrid contribution 1.338 -0.437 -0.682 1.564 sum 1.843 -13.261 18.455 22.800 Atomic orbital electron populations 1.21790 0.90126 1.03762 1.03923 1.21000 0.99804 1.00397 0.90074 0.88200 1.23354 1.04147 1.01768 0.93184 1.85351 1.70404 1.34127 0.96982 1.21965 1.03177 0.98860 0.97490 1.21381 1.00483 0.95211 1.00446 1.21386 0.98680 0.99901 0.92798 1.21576 0.99068 0.97148 0.96943 1.21462 0.96488 0.94492 0.99790 1.21022 1.01331 1.01066 0.90384 1.20368 0.77570 0.85910 0.83908 1.90633 1.49793 1.19709 1.86052 1.48653 1.65782 1.12701 1.06948 1.21957 1.00453 0.96253 0.82239 1.23191 1.03773 0.93641 0.97015 1.20148 0.79414 0.92016 0.91147 1.86055 1.22070 1.91520 1.37935 1.21347 1.19520 0.90445 1.26670 0.92836 1.25760 0.97576 0.96012 0.97465 1.70072 1.45891 1.00635 1.40147 0.84939 0.78710 0.73259 0.80118 1.21195 1.26744 1.18892 1.22946 0.99966 0.79517 0.98911 0.89409 0.91385 0.91228 0.89943 0.88469 0.86332 0.83963 0.83019 0.82777 0.84727 0.91915 0.91029 0.88861 0.90088 0.76506 0.92418 0.89312 0.91251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.28 8.89 71.98 0.64 -2.64 16 2 C -0.09 -2.52 2.15 -11.54 -0.02 -2.54 16 3 H 0.10 2.88 6.95 -2.39 -0.02 2.87 16 4 C -0.08 -1.96 3.14 71.98 0.23 -1.74 16 5 S -0.11 -2.73 20.86 -56.49 -1.18 -3.91 16 6 C -0.10 -2.35 6.11 22.62 0.14 -2.21 16 7 C -0.15 -3.34 9.36 22.41 0.21 -3.13 16 8 C -0.11 -1.89 10.04 22.25 0.22 -1.66 16 9 C -0.13 -1.83 10.04 22.30 0.22 -1.60 16 10 C -0.10 -1.53 10.04 22.25 0.22 -1.31 16 11 C -0.11 -2.20 9.79 22.41 0.22 -1.99 16 12 C 0.53 18.01 7.01 87.66 0.61 18.62 16 13 O -0.58 -22.17 16.45 -3.05 -0.05 -22.22 16 14 N -0.61 -20.85 3.32 -811.35 -2.70 -23.55 16 15 C 0.11 3.58 6.87 86.73 0.60 4.18 16 16 C -0.14 -4.51 6.11 31.78 0.19 -4.31 16 17 C 0.21 8.48 0.70 -10.07 -0.01 8.47 16 18 O -0.57 -22.25 8.74 -148.98 -1.30 -23.55 16 19 C -0.54 -26.78 8.87 25.60 0.23 -26.55 16 20 H 0.05 2.92 8.00 -2.91 -0.02 2.90 16 21 C 0.03 1.74 5.46 84.66 0.46 2.20 16 22 N -0.93 -53.70 13.96 21.45 0.30 -53.40 16 23 Si 1.00 45.93 24.95 68.60 1.71 47.64 16 24 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 25 H -0.34 -16.09 7.11 99.48 0.71 -15.38 16 26 H -0.26 -11.67 5.34 99.48 0.53 -11.14 16 27 C 0.11 4.02 5.25 86.94 0.46 4.47 16 28 H 0.09 1.87 7.37 -2.39 -0.02 1.85 16 29 H 0.07 1.65 7.46 -2.39 -0.02 1.63 16 30 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.08 2.27 7.76 -2.39 -0.02 2.25 16 32 H 0.10 2.51 7.66 -2.39 -0.02 2.49 16 33 H 0.12 2.70 5.88 -2.91 -0.02 2.68 16 34 H 0.14 1.87 8.06 -2.91 -0.02 1.84 16 35 H 0.15 1.27 8.06 -2.91 -0.02 1.25 16 36 H 0.15 1.37 8.06 -2.91 -0.02 1.34 16 37 H 0.13 2.28 8.06 -2.91 -0.02 2.25 16 38 H 0.06 1.99 8.14 -2.38 -0.02 1.97 16 39 H 0.07 2.09 8.14 -2.38 -0.02 2.07 16 40 H 0.09 2.70 8.12 -2.39 -0.02 2.68 16 41 H 0.08 2.65 7.99 -2.38 -0.02 2.63 16 42 H 0.38 12.92 9.05 -74.06 -0.67 12.25 16 43 H 0.27 14.69 8.31 -92.71 -0.77 13.92 16 44 H 0.09 3.17 7.70 -2.39 -0.02 3.15 16 45 H 0.07 2.66 5.27 -2.39 -0.01 2.65 16 Total: -1.00 -64.69 371.85 1.56 -63.13 By element: Atomic # 1 Polarization: 27.46 SS G_CDS: 0.15 Total: 27.61 kcal Atomic # 6 Polarization: -16.37 SS G_CDS: 4.62 Total: -11.75 kcal Atomic # 7 Polarization: -74.56 SS G_CDS: -2.40 Total: -76.95 kcal Atomic # 8 Polarization: -44.42 SS G_CDS: -1.35 Total: -45.77 kcal Atomic # 14 Polarization: 45.93 SS G_CDS: 1.71 Total: 47.64 kcal Atomic # 16 Polarization: -2.73 SS G_CDS: -1.18 Total: -3.91 kcal Total: -64.69 1.56 -63.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592845910.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.854 kcal (2) G-P(sol) polarization free energy of solvation -64.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds