Wall clock time and date at job start Tue Mar 31 2020 18:06:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.46655 * 2 1 4 4 C 1.52991 * 109.47319 * 239.99996 * 2 1 3 5 5 S 1.81401 * 109.47329 * 65.00040 * 4 2 1 6 6 C 1.76198 * 103.00413 * 179.97438 * 5 4 2 7 7 C 1.38969 * 120.07750 * 359.72310 * 6 5 4 8 8 C 1.38086 * 119.91772 * 179.68029 * 7 6 5 9 9 C 1.38299 * 120.07898 * 0.61841 * 8 7 6 10 10 C 1.38308 * 120.16152 * 359.68013 * 9 8 7 11 11 C 1.38079 * 120.07754 * 359.97438 * 10 9 8 12 12 C 1.50704 * 109.46962 * 119.99972 * 2 1 3 13 13 O 1.21271 * 119.99874 * 93.94824 * 12 2 1 14 14 N 1.34780 * 119.99910 * 273.94873 * 12 2 1 15 15 C 1.47424 * 125.64841 * 354.70257 * 14 12 2 16 16 C 1.54912 * 104.83073 * 155.83943 * 15 14 12 17 17 C 1.55148 * 101.58321 * 37.00805 * 16 15 14 18 18 O 1.42905 * 110.72038 * 82.86233 * 17 16 15 19 19 C 1.50696 * 110.72177 * 205.95824 * 17 16 15 20 20 H 1.08006 * 119.99849 * 116.16371 * 19 17 16 21 21 C 1.37876 * 120.00006 * 296.15932 * 19 17 16 22 22 N 1.31511 * 120.00013 * 359.97438 * 21 19 17 23 23 Si 1.86802 * 119.99831 * 180.02562 * 21 19 17 24 24 H 1.48496 * 109.47486 * 359.97438 * 23 21 19 25 25 H 1.48507 * 109.47061 * 120.00217 * 23 21 19 26 26 H 1.48503 * 109.47000 * 239.99739 * 23 21 19 27 27 C 1.47019 * 125.64685 * 174.66388 * 14 12 2 28 28 H 1.08990 * 109.47383 * 304.69737 * 1 2 3 29 29 H 1.08998 * 109.46947 * 64.70168 * 1 2 3 30 30 H 1.09003 * 109.46876 * 184.69957 * 1 2 3 31 31 H 1.09002 * 109.47251 * 184.99774 * 4 2 1 32 32 H 1.08998 * 109.47328 * 304.99871 * 4 2 1 33 33 H 1.07997 * 120.04377 * 0.02562 * 7 6 5 34 34 H 1.07999 * 119.95989 * 180.31945 * 8 7 6 35 35 H 1.07997 * 119.92071 * 179.70157 * 9 8 7 36 36 H 1.08002 * 119.96113 * 180.02562 * 10 9 8 37 37 H 1.08004 * 120.03891 * 180.02562 * 11 10 9 38 38 H 1.09003 * 110.36557 * 37.00033 * 15 14 12 39 39 H 1.09001 * 110.36880 * 274.67686 * 15 14 12 40 40 H 1.09005 * 111.00149 * 278.93350 * 16 15 14 41 41 H 1.08997 * 111.03332 * 155.10229 * 16 15 14 42 42 H 0.96702 * 113.99772 * 61.45032 * 18 17 16 43 43 H 0.97006 * 119.99770 * 180.02562 * 22 21 19 44 44 H 1.09003 * 109.88146 * 61.68095 * 27 14 12 45 45 H 1.08997 * 109.88464 * 300.51457 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 16 1.5602 0.2156 -2.7266 6 6 2.2236 -0.7511 -4.0418 7 6 2.9218 -1.9200 -3.7635 8 6 3.4347 -2.6786 -4.7971 9 6 3.2651 -2.2697 -6.1074 10 6 2.5761 -1.1037 -6.3878 11 6 2.0545 -0.3438 -5.3597 12 6 2.0323 -0.7104 1.2305 13 8 2.3026 -1.8916 1.1808 14 7 2.1812 -0.0330 2.3862 15 6 1.9970 1.4192 2.5607 16 6 1.6634 1.5989 4.0627 17 6 2.5748 0.5260 4.7149 18 8 3.9021 1.0269 4.8867 19 6 2.0038 0.0712 6.0332 20 1 1.6882 -0.9539 6.1602 21 6 1.8844 0.9637 7.0774 22 7 2.2692 2.2117 6.9229 23 14 1.1773 0.3997 8.7118 24 1 0.8234 -1.0400 8.6277 25 1 2.1859 0.6003 9.7832 26 1 -0.0401 1.1908 9.0238 27 6 2.5533 -0.6202 3.6817 28 1 -0.3633 0.5849 0.8448 29 1 -0.3633 0.4391 -0.9291 30 1 -0.3633 -1.0243 0.0842 31 1 3.1264 -0.7994 -1.2055 32 1 1.6055 -1.7198 -1.2951 33 1 3.0584 -2.2377 -2.7404 34 1 3.9729 -3.5898 -4.5819 35 1 3.6714 -2.8624 -6.9135 36 1 2.4453 -0.7876 -7.4122 37 1 1.5162 0.5664 -5.5795 38 1 1.1714 1.7738 1.9436 39 1 2.9149 1.9509 2.3098 40 1 0.6116 1.3886 4.2572 41 1 1.9296 2.5987 4.4057 42 1 3.9593 1.7982 5.4672 43 1 2.1856 2.8395 7.6577 44 1 3.5413 -1.0753 3.6123 45 1 1.8175 -1.3692 3.9742 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592845911.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:06:16 Heat of formation + Delta-G solvation = -67.646376 kcal Electronic energy + Delta-G solvation = -26017.482685 eV Core-core repulsion = 22318.555704 eV Total energy + Delta-G solvation = -3698.926981 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.134 amu Computer time = 1.88 seconds Orbital eigenvalues (eV) -39.82017 -39.14145 -37.51476 -34.57588 -34.32784 -32.23446 -31.40290 -31.19027 -29.77713 -28.44648 -27.51092 -25.51152 -23.55815 -22.97045 -22.69162 -21.75833 -19.70459 -18.72577 -17.87915 -17.44771 -17.06316 -16.34887 -15.58144 -15.28353 -15.23387 -14.99343 -14.88670 -14.51647 -14.26622 -13.96918 -13.72162 -13.45398 -13.25955 -13.06115 -12.93967 -12.43544 -12.31118 -12.06621 -11.69485 -11.56327 -11.50277 -11.43346 -11.41031 -11.35587 -11.26177 -10.93570 -10.67633 -10.49062 -10.36174 -10.17022 -9.98986 -9.51657 -9.35284 -9.25703 -8.71432 -8.27335 -8.09916 -7.58359 -6.33828 -4.40797 0.95007 1.09795 1.26184 2.20054 2.91094 3.15832 3.25160 3.29436 3.44940 3.46492 4.23177 4.46132 4.58699 4.66723 4.70601 4.75596 4.83204 4.94667 5.12061 5.17762 5.25732 5.37767 5.43897 5.46694 5.52009 5.64091 5.70968 5.73997 5.81028 5.86059 5.94814 6.00967 6.08698 6.10610 6.18594 6.22830 6.39786 6.61607 6.62710 6.82888 6.89617 7.22826 7.28305 7.68857 7.96541 8.01021 8.49051 8.61935 9.26501 9.36679 10.74175 Molecular weight = 335.13amu Principal moments of inertia in cm(-1) A = 0.032356 B = 0.002158 C = 0.002122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.168575 B =12972.066609 C =13193.082966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.091 4.091 3 H 0.099 0.901 4 C -0.087 4.087 5 S -0.111 6.111 6 C -0.082 4.082 7 C -0.133 4.133 8 C -0.100 4.100 9 C -0.129 4.129 10 C -0.104 4.104 11 C -0.103 4.103 12 C 0.532 3.468 13 O -0.554 6.554 14 N -0.604 5.604 15 C 0.092 3.908 16 C -0.136 4.136 17 C 0.247 3.753 18 O -0.586 6.586 19 C -0.534 4.534 20 H 0.065 0.935 21 C 0.072 3.928 22 N -0.896 5.896 23 Si 0.903 3.097 24 H -0.271 1.271 25 H -0.281 1.281 26 H -0.282 1.282 27 C 0.122 3.878 28 H 0.068 0.932 29 H 0.075 0.925 30 H 0.065 0.935 31 H 0.092 0.908 32 H 0.100 0.900 33 H 0.127 0.873 34 H 0.125 0.875 35 H 0.123 0.877 36 H 0.126 0.874 37 H 0.127 0.873 38 H 0.062 0.938 39 H 0.064 0.936 40 H 0.068 0.932 41 H 0.087 0.913 42 H 0.384 0.616 43 H 0.268 0.732 44 H 0.062 0.938 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.862 -1.405 -21.402 21.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.113 4.113 3 H 0.118 0.882 4 C -0.235 4.235 5 S 0.135 5.865 6 C -0.194 4.194 7 C -0.157 4.157 8 C -0.120 4.120 9 C -0.150 4.150 10 C -0.124 4.124 11 C -0.127 4.127 12 C 0.318 3.682 13 O -0.433 6.433 14 N -0.336 5.336 15 C -0.030 4.030 16 C -0.175 4.175 17 C 0.207 3.793 18 O -0.395 6.395 19 C -0.572 4.572 20 H 0.083 0.917 21 C -0.130 4.130 22 N -0.536 5.536 23 Si 0.730 3.270 24 H -0.196 1.196 25 H -0.207 1.207 26 H -0.208 1.208 27 C 0.000 4.000 28 H 0.087 0.913 29 H 0.093 0.907 30 H 0.084 0.916 31 H 0.110 0.890 32 H 0.118 0.882 33 H 0.145 0.855 34 H 0.143 0.857 35 H 0.141 0.859 36 H 0.144 0.856 37 H 0.145 0.855 38 H 0.081 0.919 39 H 0.083 0.917 40 H 0.086 0.914 41 H 0.106 0.894 42 H 0.235 0.765 43 H 0.078 0.922 44 H 0.080 0.920 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -2.225 -1.319 -21.709 21.862 hybrid contribution 0.250 -0.835 1.359 1.615 sum -1.975 -2.154 -20.349 20.558 Atomic orbital electron populations 1.21815 0.91759 1.03412 1.03228 1.20978 0.98534 1.00684 0.91146 0.88242 1.23532 1.04834 1.02130 0.93022 1.85337 1.70083 1.33984 0.97121 1.21838 1.01898 0.98510 0.97195 1.21310 0.99424 0.94738 1.00187 1.21099 0.98893 0.99373 0.92593 1.21185 1.00004 0.97146 0.96645 1.21082 0.97557 0.94898 0.98821 1.20765 1.01012 1.00346 0.90547 1.19860 0.78228 0.86805 0.83335 1.90661 1.51959 1.15945 1.84732 1.48621 1.66626 1.09566 1.08779 1.22571 1.00020 0.80340 1.00104 1.23320 1.01212 1.02684 0.90256 1.19461 0.80669 0.87793 0.91384 1.86126 1.29495 1.52038 1.71848 1.21547 1.41914 0.97221 0.96513 0.91705 1.24983 0.94274 0.94654 0.99116 1.69648 1.47647 1.03393 1.32917 0.86356 0.78668 0.79058 0.82871 1.19582 1.20737 1.20818 1.22098 0.99830 0.97071 0.80964 0.91286 0.90657 0.91623 0.88972 0.88161 0.85500 0.85686 0.85900 0.85613 0.85525 0.91933 0.91750 0.91374 0.89404 0.76524 0.92194 0.91998 0.90969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.70 9.05 37.16 0.34 -1.36 16 2 C -0.09 -1.21 2.04 -91.77 -0.19 -1.39 16 3 H 0.10 1.23 7.19 -51.93 -0.37 0.85 16 4 C -0.09 -1.07 3.23 37.15 0.12 -0.95 16 5 S -0.11 -1.24 20.66 -107.50 -2.22 -3.46 16 6 C -0.08 -0.91 6.11 -39.04 -0.24 -1.15 16 7 C -0.13 -1.45 9.36 -39.37 -0.37 -1.82 16 8 C -0.10 -0.93 10.04 -39.61 -0.40 -1.33 16 9 C -0.13 -1.07 10.04 -39.53 -0.40 -1.46 16 10 C -0.10 -0.86 10.04 -39.61 -0.40 -1.26 16 11 C -0.10 -1.00 9.79 -39.37 -0.39 -1.38 16 12 C 0.53 9.44 6.94 -10.98 -0.08 9.36 16 13 O -0.55 -11.48 16.55 5.56 0.09 -11.38 16 14 N -0.60 -11.46 3.33 -170.52 -0.57 -12.03 16 15 C 0.09 1.59 6.36 -2.53 -0.02 1.57 16 16 C -0.14 -2.81 5.56 -24.59 -0.14 -2.94 16 17 C 0.25 5.80 0.85 -89.94 -0.08 5.73 16 18 O -0.59 -14.44 13.06 -35.23 -0.46 -14.90 16 19 C -0.53 -13.67 8.22 -34.44 -0.28 -13.95 16 20 H 0.06 1.68 7.56 -52.48 -0.40 1.28 16 21 C 0.07 1.82 5.29 -17.82 -0.09 1.72 16 22 N -0.90 -22.52 10.69 55.43 0.59 -21.93 16 23 Si 0.90 19.95 29.54 -169.99 -5.02 14.93 16 24 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 25 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 26 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 27 C 0.12 2.69 6.23 -3.06 -0.02 2.67 16 28 H 0.07 0.81 7.51 -51.93 -0.39 0.42 16 29 H 0.07 0.77 6.98 -51.93 -0.36 0.41 16 30 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 31 H 0.09 1.18 7.74 -51.92 -0.40 0.78 16 32 H 0.10 1.29 7.65 -51.93 -0.40 0.89 16 33 H 0.13 1.39 5.88 -52.49 -0.31 1.08 16 34 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 35 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16 36 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 37 H 0.13 1.05 8.06 -52.48 -0.42 0.63 16 38 H 0.06 0.89 6.76 -51.93 -0.35 0.54 16 39 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.07 1.44 8.04 -51.93 -0.42 1.02 16 41 H 0.09 1.89 7.64 -51.93 -0.40 1.49 16 42 H 0.38 9.47 7.28 45.56 0.33 9.80 16 43 H 0.27 6.45 8.31 -40.82 -0.34 6.11 16 44 H 0.06 1.43 8.07 -51.93 -0.42 1.01 16 45 H 0.07 1.61 7.66 -51.93 -0.40 1.22 16 LS Contribution 377.06 15.07 5.68 5.68 Total: -1.00 -28.12 377.06 -10.47 -38.60 By element: Atomic # 1 Polarization: 18.38 SS G_CDS: -5.95 Total: 12.43 kcal Atomic # 6 Polarization: -5.32 SS G_CDS: -2.62 Total: -7.94 kcal Atomic # 7 Polarization: -33.98 SS G_CDS: 0.03 Total: -33.95 kcal Atomic # 8 Polarization: -25.92 SS G_CDS: -0.37 Total: -26.29 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -5.02 Total: 14.93 kcal Atomic # 16 Polarization: -1.24 SS G_CDS: -2.22 Total: -3.46 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -28.12 -10.47 -38.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592845911.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.050 kcal (2) G-P(sol) polarization free energy of solvation -28.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.88 seconds