Wall clock time and date at job start Tue Mar 31 2020 18:06:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.46655 * 2 1 4 4 C 1.52991 * 109.47319 * 239.99996 * 2 1 3 5 5 S 1.81401 * 109.47329 * 65.00040 * 4 2 1 6 6 C 1.76198 * 103.00413 * 179.97438 * 5 4 2 7 7 C 1.38969 * 120.07750 * 359.72310 * 6 5 4 8 8 C 1.38086 * 119.91772 * 179.68029 * 7 6 5 9 9 C 1.38299 * 120.07898 * 0.61841 * 8 7 6 10 10 C 1.38308 * 120.16152 * 359.68013 * 9 8 7 11 11 C 1.38079 * 120.07754 * 359.97438 * 10 9 8 12 12 C 1.50704 * 109.46962 * 119.99972 * 2 1 3 13 13 O 1.21271 * 119.99874 * 93.94824 * 12 2 1 14 14 N 1.34780 * 119.99910 * 273.94873 * 12 2 1 15 15 C 1.47424 * 125.64841 * 354.70257 * 14 12 2 16 16 C 1.54912 * 104.83073 * 155.83943 * 15 14 12 17 17 C 1.55148 * 101.58321 * 37.00805 * 16 15 14 18 18 O 1.42905 * 110.72038 * 82.86233 * 17 16 15 19 19 C 1.50696 * 110.72177 * 205.95824 * 17 16 15 20 20 H 1.08006 * 119.99849 * 116.16371 * 19 17 16 21 21 C 1.37876 * 120.00006 * 296.15932 * 19 17 16 22 22 N 1.31511 * 120.00013 * 359.97438 * 21 19 17 23 23 Si 1.86802 * 119.99831 * 180.02562 * 21 19 17 24 24 H 1.48496 * 109.47486 * 359.97438 * 23 21 19 25 25 H 1.48507 * 109.47061 * 120.00217 * 23 21 19 26 26 H 1.48503 * 109.47000 * 239.99739 * 23 21 19 27 27 C 1.47019 * 125.64685 * 174.66388 * 14 12 2 28 28 H 1.08990 * 109.47383 * 304.69737 * 1 2 3 29 29 H 1.08998 * 109.46947 * 64.70168 * 1 2 3 30 30 H 1.09003 * 109.46876 * 184.69957 * 1 2 3 31 31 H 1.09002 * 109.47251 * 184.99774 * 4 2 1 32 32 H 1.08998 * 109.47328 * 304.99871 * 4 2 1 33 33 H 1.07997 * 120.04377 * 0.02562 * 7 6 5 34 34 H 1.07999 * 119.95989 * 180.31945 * 8 7 6 35 35 H 1.07997 * 119.92071 * 179.70157 * 9 8 7 36 36 H 1.08002 * 119.96113 * 180.02562 * 10 9 8 37 37 H 1.08004 * 120.03891 * 180.02562 * 11 10 9 38 38 H 1.09003 * 110.36557 * 37.00033 * 15 14 12 39 39 H 1.09001 * 110.36880 * 274.67686 * 15 14 12 40 40 H 1.09005 * 111.00149 * 278.93350 * 16 15 14 41 41 H 1.08997 * 111.03332 * 155.10229 * 16 15 14 42 42 H 0.96702 * 113.99772 * 61.45032 * 18 17 16 43 43 H 0.97006 * 119.99770 * 180.02562 * 22 21 19 44 44 H 1.09003 * 109.88146 * 61.68095 * 27 14 12 45 45 H 1.08997 * 109.88464 * 300.51457 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 16 1.5602 0.2156 -2.7266 6 6 2.2236 -0.7511 -4.0418 7 6 2.9218 -1.9200 -3.7635 8 6 3.4347 -2.6786 -4.7971 9 6 3.2651 -2.2697 -6.1074 10 6 2.5761 -1.1037 -6.3878 11 6 2.0545 -0.3438 -5.3597 12 6 2.0323 -0.7104 1.2305 13 8 2.3026 -1.8916 1.1808 14 7 2.1812 -0.0330 2.3862 15 6 1.9970 1.4192 2.5607 16 6 1.6634 1.5989 4.0627 17 6 2.5748 0.5260 4.7149 18 8 3.9021 1.0269 4.8867 19 6 2.0038 0.0712 6.0332 20 1 1.6882 -0.9539 6.1602 21 6 1.8844 0.9637 7.0774 22 7 2.2692 2.2117 6.9229 23 14 1.1773 0.3997 8.7118 24 1 0.8234 -1.0400 8.6277 25 1 2.1859 0.6003 9.7832 26 1 -0.0401 1.1908 9.0238 27 6 2.5533 -0.6202 3.6817 28 1 -0.3633 0.5849 0.8448 29 1 -0.3633 0.4391 -0.9291 30 1 -0.3633 -1.0243 0.0842 31 1 3.1264 -0.7994 -1.2055 32 1 1.6055 -1.7198 -1.2951 33 1 3.0584 -2.2377 -2.7404 34 1 3.9729 -3.5898 -4.5819 35 1 3.6714 -2.8624 -6.9135 36 1 2.4453 -0.7876 -7.4122 37 1 1.5162 0.5664 -5.5795 38 1 1.1714 1.7738 1.9436 39 1 2.9149 1.9509 2.3098 40 1 0.6116 1.3886 4.2572 41 1 1.9296 2.5987 4.4057 42 1 3.9593 1.7982 5.4672 43 1 2.1856 2.8395 7.6577 44 1 3.5413 -1.0753 3.6123 45 1 1.8175 -1.3692 3.9742 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592845911.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:06:14 Heat of formation + Delta-G solvation = -83.092958 kcal Electronic energy + Delta-G solvation = -26018.152499 eV Core-core repulsion = 22318.555704 eV Total energy + Delta-G solvation = -3699.596795 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.134 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.31393 -39.82805 -39.18062 -36.16080 -35.67474 -34.19250 -32.12292 -31.88383 -31.43525 -30.11431 -28.49936 -27.27548 -24.91337 -23.77492 -23.59189 -22.99919 -21.46388 -20.08239 -19.19360 -18.67176 -18.54418 -17.16622 -17.06728 -16.91900 -16.48528 -16.25954 -15.95977 -15.86207 -15.43535 -15.36558 -14.82574 -14.53731 -14.32351 -14.14906 -13.99510 -13.86817 -13.66041 -13.57701 -13.23585 -13.16059 -13.09374 -12.69065 -12.52927 -12.44376 -12.40701 -12.30099 -12.26570 -12.05037 -11.99068 -11.30352 -11.25363 -10.89313 -10.70709 -10.61781 -10.15289 -9.95982 -9.68105 -8.40441 -8.26258 -6.39769 0.23263 0.36941 0.39674 1.31529 1.39324 1.44141 1.49694 1.53646 2.00561 2.38910 2.75388 2.99414 3.37598 3.50985 3.67266 3.85348 3.90456 3.97328 3.99726 4.12596 4.23617 4.26207 4.35636 4.39540 4.48152 4.51799 4.55794 4.56682 4.63781 4.77764 4.80289 4.82466 4.91293 5.04927 5.14450 5.18383 5.22262 5.29701 5.44349 5.44456 5.51953 5.55222 5.75604 5.97389 6.06479 6.52567 6.64014 7.02784 7.30513 7.41251 8.80317 Molecular weight = 335.13amu Principal moments of inertia in cm(-1) A = 0.032356 B = 0.002158 C = 0.002122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.168575 B =12972.066609 C =13193.082966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.080 4.080 3 H 0.118 0.882 4 C -0.084 4.084 5 S -0.095 6.095 6 C -0.105 4.105 7 C -0.153 4.153 8 C -0.110 4.110 9 C -0.128 4.128 10 C -0.103 4.103 11 C -0.112 4.112 12 C 0.529 3.471 13 O -0.588 6.588 14 N -0.608 5.608 15 C 0.101 3.899 16 C -0.126 4.126 17 C 0.234 3.766 18 O -0.594 6.594 19 C -0.561 4.561 20 H 0.051 0.949 21 C 0.038 3.962 22 N -0.905 5.905 23 Si 0.958 3.042 24 H -0.276 1.276 25 H -0.280 1.280 26 H -0.274 1.274 27 C 0.128 3.872 28 H 0.074 0.926 29 H 0.095 0.905 30 H 0.056 0.944 31 H 0.082 0.918 32 H 0.090 0.910 33 H 0.116 0.884 34 H 0.139 0.861 35 H 0.150 0.850 36 H 0.155 0.845 37 H 0.139 0.861 38 H 0.103 0.897 39 H 0.072 0.928 40 H 0.061 0.939 41 H 0.079 0.921 42 H 0.381 0.619 43 H 0.272 0.728 44 H 0.041 0.959 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.693 -0.420 -23.607 23.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.102 4.102 3 H 0.136 0.864 4 C -0.233 4.233 5 S 0.149 5.851 6 C -0.217 4.217 7 C -0.176 4.176 8 C -0.130 4.130 9 C -0.148 4.148 10 C -0.122 4.122 11 C -0.135 4.135 12 C 0.317 3.683 13 O -0.470 6.470 14 N -0.339 5.339 15 C -0.021 4.021 16 C -0.165 4.165 17 C 0.195 3.805 18 O -0.404 6.404 19 C -0.599 4.599 20 H 0.069 0.931 21 C -0.164 4.164 22 N -0.544 5.544 23 Si 0.784 3.216 24 H -0.201 1.201 25 H -0.205 1.205 26 H -0.200 1.200 27 C 0.005 3.995 28 H 0.093 0.907 29 H 0.114 0.886 30 H 0.075 0.925 31 H 0.101 0.899 32 H 0.108 0.892 33 H 0.134 0.866 34 H 0.157 0.843 35 H 0.168 0.832 36 H 0.173 0.827 37 H 0.157 0.843 38 H 0.121 0.879 39 H 0.090 0.910 40 H 0.080 0.920 41 H 0.098 0.902 42 H 0.232 0.768 43 H 0.082 0.918 44 H 0.060 0.940 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -3.057 -0.320 -23.936 24.132 hybrid contribution 0.563 -1.205 1.968 2.376 sum -2.494 -1.525 -21.967 22.161 Atomic orbital electron populations 1.21827 0.90191 1.03243 1.04530 1.20972 0.99559 1.00824 0.88867 0.86437 1.23384 1.04157 1.01961 0.93762 1.85104 1.70238 1.33508 0.96212 1.21994 1.02999 0.98961 0.97780 1.21365 1.00542 0.95463 1.00277 1.21370 0.98884 0.99799 0.92934 1.21564 0.99159 0.97263 0.96816 1.21472 0.96436 0.94426 0.99906 1.21030 1.01204 1.01057 0.90234 1.20713 0.77045 0.86543 0.83972 1.90641 1.53250 1.17762 1.85322 1.48676 1.66890 1.10281 1.08096 1.22599 1.01942 0.79244 0.98288 1.23095 0.99949 1.01002 0.92438 1.19606 0.80541 0.89147 0.91253 1.86112 1.30526 1.51981 1.71743 1.21741 1.43044 0.96901 0.98223 0.93111 1.25566 0.94469 0.94829 1.01516 1.69697 1.47406 1.03697 1.33648 0.85507 0.78218 0.78330 0.79531 1.20122 1.20523 1.19967 1.21802 0.98429 0.96587 0.82666 0.90734 0.88633 0.92498 0.89947 0.89162 0.86602 0.84322 0.83195 0.82716 0.84342 0.87871 0.90956 0.92046 0.90233 0.76844 0.91830 0.94024 0.92144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.02 9.05 71.98 0.65 -2.37 16 2 C -0.08 -2.01 2.04 -11.54 -0.02 -2.04 16 3 H 0.12 2.57 7.19 -2.39 -0.02 2.56 16 4 C -0.08 -2.04 3.23 71.98 0.23 -1.81 16 5 S -0.10 -2.00 20.66 -56.49 -1.17 -3.17 16 6 C -0.10 -2.23 6.11 22.62 0.14 -2.09 16 7 C -0.15 -3.30 9.36 22.41 0.21 -3.09 16 8 C -0.11 -1.93 10.04 22.25 0.22 -1.70 16 9 C -0.13 -1.79 10.04 22.30 0.22 -1.56 16 10 C -0.10 -1.42 10.04 22.25 0.22 -1.19 16 11 C -0.11 -1.94 9.79 22.41 0.22 -1.72 16 12 C 0.53 18.70 6.94 87.66 0.61 19.31 16 13 O -0.59 -25.01 16.55 -3.00 -0.05 -25.06 16 14 N -0.61 -22.94 3.33 -811.79 -2.70 -25.64 16 15 C 0.10 3.31 6.36 86.86 0.55 3.86 16 16 C -0.13 -5.16 5.56 31.98 0.18 -4.98 16 17 C 0.23 11.22 0.85 -10.35 -0.01 11.21 16 18 O -0.59 -29.88 13.06 -148.98 -1.95 -31.83 16 19 C -0.56 -29.36 8.22 25.60 0.21 -29.14 16 20 H 0.05 2.72 7.56 -2.91 -0.02 2.70 16 21 C 0.04 1.90 5.29 84.65 0.45 2.35 16 22 N -0.91 -45.35 10.69 21.45 0.23 -45.12 16 23 Si 0.96 40.95 29.54 68.60 2.03 42.98 16 24 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 25 H -0.28 -11.80 7.11 99.48 0.71 -11.10 16 26 H -0.27 -11.32 7.11 99.48 0.71 -10.62 16 27 C 0.13 5.83 6.23 86.73 0.54 6.37 16 28 H 0.07 1.54 7.51 -2.39 -0.02 1.52 16 29 H 0.10 1.70 6.98 -2.39 -0.02 1.68 16 30 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.08 2.14 7.74 -2.39 -0.02 2.12 16 32 H 0.09 2.36 7.65 -2.39 -0.02 2.34 16 33 H 0.12 2.65 5.88 -2.91 -0.02 2.64 16 34 H 0.14 1.91 8.06 -2.91 -0.02 1.89 16 35 H 0.15 1.24 8.06 -2.91 -0.02 1.22 16 36 H 0.16 1.18 8.06 -2.91 -0.02 1.16 16 37 H 0.14 1.98 8.06 -2.91 -0.02 1.96 16 38 H 0.10 2.58 6.76 -2.39 -0.02 2.57 16 39 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 40 H 0.06 2.56 8.04 -2.38 -0.02 2.55 16 41 H 0.08 3.38 7.64 -2.39 -0.02 3.36 16 42 H 0.38 19.14 7.28 -74.06 -0.54 18.60 16 43 H 0.27 12.93 8.31 -92.70 -0.77 12.16 16 44 H 0.04 2.01 8.07 -2.39 -0.02 1.99 16 45 H 0.06 2.83 7.66 -2.39 -0.02 2.82 16 Total: -1.00 -61.46 377.06 1.48 -59.98 By element: Atomic # 1 Polarization: 36.01 SS G_CDS: 0.46 Total: 36.47 kcal Atomic # 6 Polarization: -13.24 SS G_CDS: 4.63 Total: -8.61 kcal Atomic # 7 Polarization: -68.29 SS G_CDS: -2.47 Total: -70.76 kcal Atomic # 8 Polarization: -54.89 SS G_CDS: -2.00 Total: -56.88 kcal Atomic # 14 Polarization: 40.95 SS G_CDS: 2.03 Total: 42.98 kcal Atomic # 16 Polarization: -2.00 SS G_CDS: -1.17 Total: -3.17 kcal Total: -61.46 1.48 -59.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592845911.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.115 kcal (2) G-P(sol) polarization free energy of solvation -61.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds