Wall clock time and date at job start Tue Mar 31 2020 18:06:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47387 * 2 1 4 4 C 1.53001 * 109.47059 * 240.00021 * 2 1 3 5 5 S 1.81405 * 109.46900 * 65.00213 * 4 2 1 6 6 C 1.76199 * 102.99592 * 179.97438 * 5 4 2 7 7 C 1.38979 * 120.08368 * 359.72602 * 6 5 4 8 8 C 1.38081 * 119.91856 * 179.72066 * 7 6 5 9 9 C 1.38299 * 120.08039 * 0.53039 * 8 7 6 10 10 C 1.38305 * 120.16097 * 359.76797 * 9 8 7 11 11 C 1.38077 * 120.08229 * 359.95502 * 10 9 8 12 12 C 1.50700 * 109.47012 * 120.00241 * 2 1 3 13 13 O 1.21283 * 119.99922 * 119.99840 * 12 2 1 14 14 N 1.34777 * 120.00192 * 299.99885 * 12 2 1 15 15 C 1.47427 * 125.64566 * 0.02766 * 14 12 2 16 16 C 1.54914 * 104.83135 * 204.09243 * 15 14 12 17 17 C 1.55158 * 101.58013 * 322.98891 * 16 15 14 18 18 O 1.42898 * 110.72052 * 277.14300 * 17 16 15 19 19 C 1.50696 * 110.72010 * 154.04447 * 17 16 15 20 20 H 1.08003 * 119.99754 * 238.12554 * 19 17 16 21 21 C 1.37873 * 120.00070 * 58.12131 * 19 17 16 22 22 N 1.31519 * 120.00182 * 6.09308 * 21 19 17 23 23 Si 1.86795 * 120.00293 * 186.08811 * 21 19 17 24 24 H 1.48508 * 109.47188 * 94.98882 * 23 21 19 25 25 H 1.48500 * 109.47741 * 214.98955 * 23 21 19 26 26 H 1.48500 * 109.46999 * 334.99271 * 23 21 19 27 27 C 1.47022 * 125.65196 * 179.71566 * 14 12 2 28 28 H 1.09001 * 109.46935 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47219 * 60.00127 * 1 2 3 30 30 H 1.09001 * 109.47421 * 299.99795 * 1 2 3 31 31 H 1.09004 * 109.47170 * 184.99864 * 4 2 1 32 32 H 1.08999 * 109.47194 * 304.99988 * 4 2 1 33 33 H 1.07999 * 120.04165 * 359.97438 * 7 6 5 34 34 H 1.08003 * 119.95996 * 180.27453 * 8 7 6 35 35 H 1.08005 * 119.92383 * 179.74394 * 9 8 7 36 36 H 1.08006 * 119.95813 * 179.97438 * 10 9 8 37 37 H 1.07994 * 120.04351 * 180.02562 * 11 10 9 38 38 H 1.09008 * 110.36852 * 322.92893 * 15 14 12 39 39 H 1.08994 * 110.36988 * 85.13739 * 15 14 12 40 40 H 1.08998 * 111.00322 * 81.06027 * 16 15 14 41 41 H 1.08997 * 110.99914 * 204.91497 * 16 15 14 42 42 H 0.96704 * 113.99658 * 298.54859 * 18 17 16 43 43 H 0.96997 * 120.00480 * 179.97438 * 22 21 19 44 44 H 1.08992 * 109.88328 * 298.39900 * 27 14 12 45 45 H 1.09007 * 109.87633 * 59.56205 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 16 1.5601 0.2157 -2.7266 6 6 2.2234 -0.7511 -4.0418 7 6 2.9216 -1.9202 -3.7636 8 6 3.4350 -2.6783 -4.7972 9 6 3.2647 -2.2698 -6.1074 10 6 2.5758 -1.1038 -6.3878 11 6 2.0547 -0.3435 -5.3597 12 6 2.0323 -0.7105 1.2304 13 8 2.7295 -1.6966 1.1191 14 7 1.7067 -0.2501 2.4546 15 6 0.8705 0.9316 2.7337 16 6 1.2943 1.3914 4.1510 17 6 1.5386 0.0327 4.8592 18 8 0.3092 -0.5163 5.3379 19 6 2.5254 0.1894 5.9873 20 1 3.4369 -0.3901 5.9918 21 6 2.2648 1.0724 7.0136 22 7 1.1044 1.6886 7.0722 23 14 3.5597 1.3935 8.3210 24 1 4.3435 2.6008 7.9555 25 1 2.8965 1.6120 9.6316 26 1 4.4688 0.2230 8.4153 27 6 2.1213 -0.8467 3.7327 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 0.5138 0.8900 31 1 3.1263 -0.7995 -1.2056 32 1 1.6053 -1.7198 -1.2952 33 1 3.0589 -2.2374 -2.7404 34 1 3.9739 -3.5892 -4.5819 35 1 3.6709 -2.8626 -6.9137 36 1 2.4451 -0.7876 -7.4123 37 1 1.5165 0.5666 -5.5794 38 1 1.0688 1.7175 2.0048 39 1 -0.1852 0.6609 2.7207 40 1 2.2095 1.9822 4.1127 41 1 0.4925 1.9469 4.6374 42 1 -0.1397 0.0362 5.9924 43 1 0.9208 2.3096 7.7943 44 1 1.7308 -1.8612 3.8122 45 1 3.2092 -0.8596 3.8001 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592845912.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:06:21 Heat of formation + Delta-G solvation = -65.221048 kcal Electronic energy + Delta-G solvation = -26051.930995 eV Core-core repulsion = 22353.109184 eV Total energy + Delta-G solvation = -3698.821811 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.134 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -39.86406 -39.13522 -37.49327 -34.69399 -34.25597 -32.27974 -31.39786 -31.18537 -29.76528 -28.53449 -27.33390 -25.46003 -23.70287 -22.96268 -22.67482 -21.64503 -19.79500 -18.82664 -17.89559 -17.43893 -16.93348 -16.27985 -15.58042 -15.42905 -15.22811 -15.07767 -14.76478 -14.68984 -14.25905 -13.77379 -13.67794 -13.35546 -13.27047 -13.08644 -12.86108 -12.66913 -12.19465 -11.99442 -11.77674 -11.73923 -11.61294 -11.39464 -11.36170 -11.27534 -11.16178 -10.84846 -10.67925 -10.51126 -10.33797 -10.15695 -9.97762 -9.51673 -9.35021 -9.25167 -8.69211 -8.28284 -8.10305 -7.57790 -6.34051 -4.40639 0.95562 1.10352 1.27739 2.21397 2.92860 3.16637 3.24969 3.28784 3.45475 3.46892 4.23289 4.46186 4.59324 4.67325 4.70596 4.76323 4.83728 4.94981 5.12602 5.16539 5.25903 5.38209 5.45841 5.47114 5.53572 5.63033 5.71428 5.72628 5.83494 5.84984 5.95334 6.01697 6.08894 6.11036 6.21812 6.23451 6.38606 6.61623 6.63271 6.83325 6.88562 7.23068 7.29587 7.68393 7.97471 8.00785 8.49117 8.62403 9.24575 9.36026 10.73825 Molecular weight = 335.13amu Principal moments of inertia in cm(-1) A = 0.029264 B = 0.002179 C = 0.002124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.585325 B =12847.668014 C =13178.092777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.090 4.090 3 H 0.104 0.896 4 C -0.084 4.084 5 S -0.113 6.113 6 C -0.081 4.081 7 C -0.133 4.133 8 C -0.100 4.100 9 C -0.129 4.129 10 C -0.104 4.104 11 C -0.103 4.103 12 C 0.531 3.469 13 O -0.555 6.555 14 N -0.603 5.603 15 C 0.093 3.907 16 C -0.136 4.136 17 C 0.247 3.753 18 O -0.586 6.586 19 C -0.535 4.535 20 H 0.064 0.936 21 C 0.073 3.927 22 N -0.894 5.894 23 Si 0.902 3.098 24 H -0.279 1.279 25 H -0.284 1.284 26 H -0.272 1.272 27 C 0.122 3.878 28 H 0.062 0.938 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.097 0.903 32 H 0.095 0.905 33 H 0.128 0.872 34 H 0.125 0.875 35 H 0.123 0.877 36 H 0.126 0.874 37 H 0.127 0.873 38 H 0.062 0.938 39 H 0.067 0.933 40 H 0.067 0.933 41 H 0.089 0.911 42 H 0.382 0.618 43 H 0.268 0.732 44 H 0.061 0.939 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.891 -0.821 -21.416 21.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.113 4.113 3 H 0.122 0.878 4 C -0.233 4.233 5 S 0.133 5.867 6 C -0.194 4.194 7 C -0.156 4.156 8 C -0.120 4.120 9 C -0.150 4.150 10 C -0.124 4.124 11 C -0.127 4.127 12 C 0.317 3.683 13 O -0.435 6.435 14 N -0.335 5.335 15 C -0.029 4.029 16 C -0.175 4.175 17 C 0.207 3.793 18 O -0.395 6.395 19 C -0.574 4.574 20 H 0.082 0.918 21 C -0.130 4.130 22 N -0.533 5.533 23 Si 0.730 3.270 24 H -0.205 1.205 25 H -0.210 1.210 26 H -0.197 1.197 27 C 0.001 3.999 28 H 0.081 0.919 29 H 0.091 0.909 30 H 0.095 0.905 31 H 0.116 0.884 32 H 0.114 0.886 33 H 0.146 0.854 34 H 0.143 0.857 35 H 0.141 0.859 36 H 0.144 0.856 37 H 0.145 0.855 38 H 0.080 0.920 39 H 0.085 0.915 40 H 0.086 0.914 41 H 0.107 0.893 42 H 0.233 0.767 43 H 0.078 0.922 44 H 0.080 0.920 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -1.105 -0.648 -21.761 21.799 hybrid contribution 1.255 -0.405 1.176 1.767 sum 0.150 -1.054 -20.585 20.612 Atomic orbital electron populations 1.22015 0.92097 1.03439 1.03708 1.20950 0.98408 1.00776 0.91136 0.87788 1.23511 1.05283 1.01634 0.92830 1.85334 1.70073 1.34082 0.97250 1.21840 1.01889 0.98498 0.97182 1.21322 0.99372 0.94732 1.00222 1.21099 0.98893 0.99387 0.92590 1.21184 1.00017 0.97151 0.96646 1.21079 0.97585 0.94901 0.98813 1.20764 1.01024 1.00344 0.90557 1.19876 0.80562 0.84495 0.83360 1.90665 1.39395 1.27019 1.86389 1.48582 1.50058 1.29338 1.05482 1.22630 0.94464 0.86528 0.99313 1.23312 1.02058 1.00523 0.91568 1.19489 0.83454 0.86739 0.89634 1.86140 1.38170 1.52216 1.63002 1.21492 1.05459 1.23782 1.06633 0.91756 1.24979 0.95620 0.94800 0.97587 1.69695 1.21557 1.28891 1.33176 0.86409 0.81367 0.78742 0.80525 1.20490 1.21019 1.19659 1.22093 0.99326 0.97418 0.81080 0.91852 0.90857 0.90535 0.88442 0.88644 0.85436 0.85690 0.85910 0.85627 0.85542 0.91976 0.91517 0.91402 0.89265 0.76733 0.92191 0.92038 0.90920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.82 8.83 37.16 0.33 -1.49 16 2 C -0.09 -1.19 2.07 -91.77 -0.19 -1.38 16 3 H 0.10 1.27 7.85 -51.93 -0.41 0.86 16 4 C -0.08 -1.04 3.12 37.16 0.12 -0.93 16 5 S -0.11 -1.27 20.73 -107.50 -2.23 -3.49 16 6 C -0.08 -0.91 6.11 -39.03 -0.24 -1.15 16 7 C -0.13 -1.46 9.36 -39.36 -0.37 -1.82 16 8 C -0.10 -0.94 10.04 -39.62 -0.40 -1.33 16 9 C -0.13 -1.07 10.04 -39.53 -0.40 -1.47 16 10 C -0.10 -0.87 10.04 -39.62 -0.40 -1.26 16 11 C -0.10 -1.00 9.79 -39.37 -0.39 -1.39 16 12 C 0.53 9.40 7.21 -10.99 -0.08 9.32 16 13 O -0.56 -11.48 16.25 5.55 0.09 -11.39 16 14 N -0.60 -11.35 3.32 -170.51 -0.57 -11.91 16 15 C 0.09 1.58 5.13 -2.52 -0.01 1.57 16 16 C -0.14 -2.80 5.43 -24.58 -0.13 -2.94 16 17 C 0.25 5.76 0.85 -89.93 -0.08 5.69 16 18 O -0.59 -14.26 13.06 -35.23 -0.46 -14.72 16 19 C -0.54 -13.70 8.22 -34.44 -0.28 -13.99 16 20 H 0.06 1.67 7.63 -52.48 -0.40 1.27 16 21 C 0.07 1.83 5.24 -17.82 -0.09 1.74 16 22 N -0.89 -22.36 10.71 55.43 0.59 -21.77 16 23 Si 0.90 19.92 29.54 -169.99 -5.02 14.90 16 24 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 25 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 26 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 27 C 0.12 2.69 6.23 -3.06 -0.02 2.67 16 28 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.07 0.75 7.13 -51.93 -0.37 0.38 16 30 H 0.08 0.91 4.99 -51.93 -0.26 0.65 16 31 H 0.10 1.28 7.55 -51.92 -0.39 0.89 16 32 H 0.09 1.21 7.76 -51.92 -0.40 0.81 16 33 H 0.13 1.41 5.88 -52.49 -0.31 1.10 16 34 H 0.13 0.93 8.06 -52.48 -0.42 0.51 16 35 H 0.12 0.73 8.06 -52.48 -0.42 0.30 16 36 H 0.13 0.73 8.06 -52.48 -0.42 0.30 16 37 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 38 H 0.06 0.88 7.36 -51.92 -0.38 0.50 16 39 H 0.07 1.09 7.07 -51.93 -0.37 0.72 16 40 H 0.07 1.45 8.04 -51.93 -0.42 1.03 16 41 H 0.09 1.91 7.53 -51.93 -0.39 1.52 16 42 H 0.38 9.29 7.52 45.56 0.34 9.63 16 43 H 0.27 6.45 8.31 -40.82 -0.34 6.11 16 44 H 0.06 1.41 8.07 -51.93 -0.42 0.99 16 45 H 0.07 1.63 7.69 -51.93 -0.40 1.23 16 LS Contribution 373.41 15.07 5.63 5.63 Total: -1.00 -27.96 373.41 -10.42 -38.38 By element: Atomic # 1 Polarization: 18.37 SS G_CDS: -5.82 Total: 12.54 kcal Atomic # 6 Polarization: -5.54 SS G_CDS: -2.63 Total: -8.17 kcal Atomic # 7 Polarization: -33.71 SS G_CDS: 0.03 Total: -33.68 kcal Atomic # 8 Polarization: -25.74 SS G_CDS: -0.37 Total: -26.11 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -5.02 Total: 14.90 kcal Atomic # 16 Polarization: -1.27 SS G_CDS: -2.23 Total: -3.49 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -27.96 -10.42 -38.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592845912.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.841 kcal (2) G-P(sol) polarization free energy of solvation -27.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds