Wall clock time and date at job start Tue Mar 31 2020 18:06:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47387 * 2 1 4 4 C 1.53001 * 109.47059 * 240.00021 * 2 1 3 5 5 S 1.81405 * 109.46900 * 65.00213 * 4 2 1 6 6 C 1.76199 * 102.99592 * 179.97438 * 5 4 2 7 7 C 1.38979 * 120.08368 * 359.72602 * 6 5 4 8 8 C 1.38081 * 119.91856 * 179.72066 * 7 6 5 9 9 C 1.38299 * 120.08039 * 0.53039 * 8 7 6 10 10 C 1.38305 * 120.16097 * 359.76797 * 9 8 7 11 11 C 1.38077 * 120.08229 * 359.95502 * 10 9 8 12 12 C 1.50700 * 109.47012 * 120.00241 * 2 1 3 13 13 O 1.21283 * 119.99922 * 119.99840 * 12 2 1 14 14 N 1.34777 * 120.00192 * 299.99885 * 12 2 1 15 15 C 1.47427 * 125.64566 * 0.02766 * 14 12 2 16 16 C 1.54914 * 104.83135 * 204.09243 * 15 14 12 17 17 C 1.55158 * 101.58013 * 322.98891 * 16 15 14 18 18 O 1.42898 * 110.72052 * 277.14300 * 17 16 15 19 19 C 1.50696 * 110.72010 * 154.04447 * 17 16 15 20 20 H 1.08003 * 119.99754 * 238.12554 * 19 17 16 21 21 C 1.37873 * 120.00070 * 58.12131 * 19 17 16 22 22 N 1.31519 * 120.00182 * 6.09308 * 21 19 17 23 23 Si 1.86795 * 120.00293 * 186.08811 * 21 19 17 24 24 H 1.48508 * 109.47188 * 94.98882 * 23 21 19 25 25 H 1.48500 * 109.47741 * 214.98955 * 23 21 19 26 26 H 1.48500 * 109.46999 * 334.99271 * 23 21 19 27 27 C 1.47022 * 125.65196 * 179.71566 * 14 12 2 28 28 H 1.09001 * 109.46935 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47219 * 60.00127 * 1 2 3 30 30 H 1.09001 * 109.47421 * 299.99795 * 1 2 3 31 31 H 1.09004 * 109.47170 * 184.99864 * 4 2 1 32 32 H 1.08999 * 109.47194 * 304.99988 * 4 2 1 33 33 H 1.07999 * 120.04165 * 359.97438 * 7 6 5 34 34 H 1.08003 * 119.95996 * 180.27453 * 8 7 6 35 35 H 1.08005 * 119.92383 * 179.74394 * 9 8 7 36 36 H 1.08006 * 119.95813 * 179.97438 * 10 9 8 37 37 H 1.07994 * 120.04351 * 180.02562 * 11 10 9 38 38 H 1.09008 * 110.36852 * 322.92893 * 15 14 12 39 39 H 1.08994 * 110.36988 * 85.13739 * 15 14 12 40 40 H 1.08998 * 111.00322 * 81.06027 * 16 15 14 41 41 H 1.08997 * 110.99914 * 204.91497 * 16 15 14 42 42 H 0.96704 * 113.99658 * 298.54859 * 18 17 16 43 43 H 0.96997 * 120.00480 * 179.97438 * 22 21 19 44 44 H 1.08992 * 109.88328 * 298.39900 * 27 14 12 45 45 H 1.09007 * 109.87633 * 59.56205 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 16 1.5601 0.2157 -2.7266 6 6 2.2234 -0.7511 -4.0418 7 6 2.9216 -1.9202 -3.7636 8 6 3.4350 -2.6783 -4.7972 9 6 3.2647 -2.2698 -6.1074 10 6 2.5758 -1.1038 -6.3878 11 6 2.0547 -0.3435 -5.3597 12 6 2.0323 -0.7105 1.2304 13 8 2.7295 -1.6966 1.1191 14 7 1.7067 -0.2501 2.4546 15 6 0.8705 0.9316 2.7337 16 6 1.2943 1.3914 4.1510 17 6 1.5386 0.0327 4.8592 18 8 0.3092 -0.5163 5.3379 19 6 2.5254 0.1894 5.9873 20 1 3.4369 -0.3901 5.9918 21 6 2.2648 1.0724 7.0136 22 7 1.1044 1.6886 7.0722 23 14 3.5597 1.3935 8.3210 24 1 4.3435 2.6008 7.9555 25 1 2.8965 1.6120 9.6316 26 1 4.4688 0.2230 8.4153 27 6 2.1213 -0.8467 3.7327 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 0.5138 0.8900 31 1 3.1263 -0.7995 -1.2056 32 1 1.6053 -1.7198 -1.2952 33 1 3.0589 -2.2374 -2.7404 34 1 3.9739 -3.5892 -4.5819 35 1 3.6709 -2.8626 -6.9137 36 1 2.4451 -0.7876 -7.4123 37 1 1.5165 0.5666 -5.5794 38 1 1.0688 1.7175 2.0048 39 1 -0.1852 0.6609 2.7207 40 1 2.2095 1.9822 4.1127 41 1 0.4925 1.9469 4.6374 42 1 -0.1397 0.0362 5.9924 43 1 0.9208 2.3096 7.7943 44 1 1.7308 -1.8612 3.8122 45 1 3.2092 -0.8596 3.8001 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592845912.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:06:20 Heat of formation + Delta-G solvation = -80.712948 kcal Electronic energy + Delta-G solvation = -26052.602774 eV Core-core repulsion = 22353.109184 eV Total energy + Delta-G solvation = -3699.493590 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.134 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -41.34619 -39.82693 -39.15298 -36.21213 -35.64935 -34.23079 -32.12801 -31.88427 -31.40294 -30.14721 -28.40622 -27.19239 -25.06578 -23.72727 -23.55828 -22.91802 -21.52824 -20.21339 -19.18784 -18.67581 -18.36284 -17.14089 -16.98566 -16.94214 -16.80695 -16.10697 -16.00128 -15.94187 -15.48723 -15.00880 -14.81926 -14.58425 -14.34766 -14.19047 -13.91524 -13.85236 -13.76791 -13.41630 -13.29264 -13.24463 -13.15006 -12.73114 -12.47297 -12.41692 -12.37053 -12.30982 -12.18301 -12.03727 -11.94866 -11.28255 -11.23465 -10.87598 -10.71495 -10.59231 -10.15430 -9.95976 -9.67182 -8.40277 -8.26332 -6.39511 0.23321 0.38349 0.39706 1.32377 1.39960 1.43901 1.51620 1.52571 2.01643 2.39012 2.75408 2.99629 3.36978 3.52200 3.67954 3.85571 3.90689 3.96933 3.99870 4.12836 4.23571 4.26281 4.34200 4.42170 4.48827 4.53541 4.55557 4.57738 4.64595 4.78325 4.82416 4.86115 4.91451 5.04999 5.15276 5.22003 5.22366 5.29866 5.44430 5.46469 5.52104 5.55215 5.75361 5.97434 6.07988 6.53365 6.64292 7.03447 7.29652 7.41815 8.79889 Molecular weight = 335.13amu Principal moments of inertia in cm(-1) A = 0.029264 B = 0.002179 C = 0.002124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.585325 B =12847.668014 C =13178.092777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.079 4.079 3 H 0.123 0.877 4 C -0.081 4.081 5 S -0.097 6.097 6 C -0.105 4.105 7 C -0.153 4.153 8 C -0.110 4.110 9 C -0.128 4.128 10 C -0.103 4.103 11 C -0.112 4.112 12 C 0.527 3.473 13 O -0.590 6.590 14 N -0.606 5.606 15 C 0.102 3.898 16 C -0.127 4.127 17 C 0.235 3.765 18 O -0.593 6.593 19 C -0.564 4.564 20 H 0.048 0.952 21 C 0.040 3.960 22 N -0.902 5.902 23 Si 0.956 3.044 24 H -0.273 1.273 25 H -0.279 1.279 26 H -0.279 1.279 27 C 0.129 3.871 28 H 0.056 0.944 29 H 0.093 0.907 30 H 0.079 0.921 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.116 0.884 34 H 0.139 0.861 35 H 0.150 0.850 36 H 0.155 0.845 37 H 0.139 0.861 38 H 0.101 0.899 39 H 0.079 0.921 40 H 0.057 0.943 41 H 0.082 0.918 42 H 0.380 0.620 43 H 0.272 0.728 44 H 0.043 0.957 45 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.309 0.422 -23.719 23.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.101 4.101 3 H 0.141 0.859 4 C -0.230 4.230 5 S 0.147 5.853 6 C -0.217 4.217 7 C -0.176 4.176 8 C -0.130 4.130 9 C -0.148 4.148 10 C -0.123 4.123 11 C -0.135 4.135 12 C 0.316 3.684 13 O -0.472 6.472 14 N -0.338 5.338 15 C -0.019 4.019 16 C -0.166 4.166 17 C 0.195 3.805 18 O -0.402 6.402 19 C -0.602 4.602 20 H 0.067 0.933 21 C -0.162 4.162 22 N -0.540 5.540 23 Si 0.782 3.218 24 H -0.198 1.198 25 H -0.204 1.204 26 H -0.204 1.204 27 C 0.006 3.994 28 H 0.075 0.925 29 H 0.112 0.888 30 H 0.098 0.902 31 H 0.103 0.897 32 H 0.105 0.895 33 H 0.134 0.866 34 H 0.157 0.843 35 H 0.168 0.832 36 H 0.173 0.827 37 H 0.156 0.844 38 H 0.119 0.881 39 H 0.097 0.903 40 H 0.076 0.924 41 H 0.100 0.900 42 H 0.230 0.770 43 H 0.082 0.918 44 H 0.061 0.939 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -1.536 0.606 -24.083 24.139 hybrid contribution 1.418 -0.866 1.823 2.467 sum -0.118 -0.260 -22.260 22.262 Atomic orbital electron populations 1.22010 0.90484 1.03419 1.04827 1.20943 0.99488 1.00902 0.88793 0.85900 1.23356 1.04416 1.01560 0.93618 1.85096 1.70204 1.33630 0.96340 1.21999 1.02995 0.98946 0.97782 1.21371 1.00511 0.95471 1.00286 1.21370 0.98881 0.99810 0.92934 1.21564 0.99167 0.97268 0.96810 1.21470 0.96454 0.94425 0.99902 1.21029 1.01218 1.01055 0.90240 1.20736 0.79579 0.84108 0.84008 1.90646 1.40887 1.28764 1.86887 1.48625 1.50489 1.29800 1.04836 1.22677 0.94655 0.86638 0.97952 1.23095 1.01331 0.98624 0.93528 1.19611 0.82699 0.88537 0.89609 1.86126 1.38505 1.52613 1.62981 1.21688 1.05723 1.24490 1.08299 0.93334 1.25544 0.97230 0.94500 0.98955 1.69743 1.22094 1.28658 1.33522 0.85577 0.79312 0.78321 0.78584 1.19843 1.20416 1.20370 1.21790 0.98301 0.96588 0.82768 0.92534 0.88808 0.90209 0.89721 0.89525 0.86596 0.84329 0.83189 0.82716 0.84358 0.88090 0.90260 0.92435 0.89996 0.77012 0.91843 0.93872 0.92366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.19 8.83 71.98 0.64 -2.55 16 2 C -0.08 -1.98 2.07 -11.54 -0.02 -2.00 16 3 H 0.12 2.67 7.85 -2.39 -0.02 2.65 16 4 C -0.08 -1.98 3.12 71.98 0.22 -1.75 16 5 S -0.10 -2.06 20.73 -56.49 -1.17 -3.23 16 6 C -0.10 -2.25 6.11 22.63 0.14 -2.11 16 7 C -0.15 -3.33 9.36 22.41 0.21 -3.12 16 8 C -0.11 -1.94 10.04 22.25 0.22 -1.72 16 9 C -0.13 -1.80 10.04 22.30 0.22 -1.58 16 10 C -0.10 -1.43 10.04 22.25 0.22 -1.21 16 11 C -0.11 -1.96 9.79 22.41 0.22 -1.74 16 12 C 0.53 18.59 7.21 87.66 0.63 19.22 16 13 O -0.59 -25.05 16.25 -3.04 -0.05 -25.10 16 14 N -0.61 -22.68 3.32 -811.75 -2.70 -25.37 16 15 C 0.10 3.30 5.13 86.86 0.45 3.74 16 16 C -0.13 -5.19 5.43 31.99 0.17 -5.02 16 17 C 0.24 11.19 0.85 -10.35 -0.01 11.18 16 18 O -0.59 -29.35 13.06 -148.98 -1.95 -31.30 16 19 C -0.56 -29.55 8.22 25.60 0.21 -29.34 16 20 H 0.05 2.62 7.63 -2.91 -0.02 2.60 16 21 C 0.04 2.00 5.24 84.65 0.44 2.45 16 22 N -0.90 -44.93 10.71 21.45 0.23 -44.70 16 23 Si 0.96 40.92 29.54 68.60 2.03 42.95 16 24 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 25 H -0.28 -11.62 7.11 99.48 0.71 -10.91 16 26 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 27 C 0.13 5.82 6.23 86.73 0.54 6.36 16 28 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.09 1.64 7.13 -2.39 -0.02 1.63 16 30 H 0.08 1.66 4.99 -2.39 -0.01 1.64 16 31 H 0.08 2.27 7.55 -2.39 -0.02 2.25 16 32 H 0.09 2.25 7.76 -2.39 -0.02 2.23 16 33 H 0.12 2.69 5.88 -2.91 -0.02 2.68 16 34 H 0.14 1.93 8.06 -2.91 -0.02 1.91 16 35 H 0.15 1.25 8.06 -2.91 -0.02 1.23 16 36 H 0.16 1.20 8.06 -2.91 -0.02 1.17 16 37 H 0.14 2.00 8.06 -2.91 -0.02 1.98 16 38 H 0.10 2.52 7.36 -2.38 -0.02 2.50 16 39 H 0.08 2.41 7.07 -2.39 -0.02 2.39 16 40 H 0.06 2.44 8.04 -2.39 -0.02 2.42 16 41 H 0.08 3.46 7.53 -2.39 -0.02 3.44 16 42 H 0.38 18.74 7.52 -74.05 -0.56 18.18 16 43 H 0.27 12.89 8.31 -92.71 -0.77 12.12 16 44 H 0.04 2.06 8.07 -2.39 -0.02 2.05 16 45 H 0.06 2.75 7.69 -2.38 -0.02 2.73 16 Total: -1.00 -61.24 373.41 1.35 -59.89 By element: Atomic # 1 Polarization: 35.61 SS G_CDS: 0.45 Total: 36.06 kcal Atomic # 6 Polarization: -13.70 SS G_CDS: 4.51 Total: -9.19 kcal Atomic # 7 Polarization: -67.60 SS G_CDS: -2.47 Total: -70.07 kcal Atomic # 8 Polarization: -54.41 SS G_CDS: -2.00 Total: -56.40 kcal Atomic # 14 Polarization: 40.92 SS G_CDS: 2.03 Total: 42.95 kcal Atomic # 16 Polarization: -2.06 SS G_CDS: -1.17 Total: -3.23 kcal Total: -61.24 1.35 -59.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592845912.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.826 kcal (2) G-P(sol) polarization free energy of solvation -61.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds