Wall clock time and date at job start Tue Mar 31 2020 19:23:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34692 * 116.99450 * 2 1 4 4 O 1.21434 * 120.00087 * 0.02562 * 3 2 1 5 5 C 1.48047 * 119.99624 * 180.02562 * 3 2 1 6 6 C 1.39180 * 119.68114 * 179.97438 * 5 3 2 7 7 C 1.38799 * 119.21924 * 179.97438 * 6 5 3 8 8 C 1.38286 * 118.58600 * 359.72698 * 7 6 5 9 9 N 1.48019 * 120.35461 * 180.28348 * 8 7 6 10 10 O 1.21805 * 119.99186 * 5.42827 * 9 8 7 11 11 O 1.21796 * 120.00324 * 185.43341 * 9 8 7 12 12 C 1.39485 * 119.29604 * 0.55406 * 8 7 6 13 13 N 1.38982 * 119.62963 * 179.70797 * 12 8 7 14 14 C 1.46844 * 110.99687 * 114.85427 * 13 12 8 15 15 C 1.53042 * 109.52160 * 185.83276 * 14 13 12 16 16 C 1.53116 * 109.27921 * 300.82227 * 15 14 13 17 17 C 1.53116 * 109.16424 * 57.65270 * 16 15 14 18 18 H 1.09000 * 109.50508 * 62.32191 * 17 16 15 19 19 C 1.50697 * 109.50684 * 182.40564 * 17 16 15 20 20 H 1.07998 * 120.00085 * 119.91581 * 19 17 16 21 21 C 1.37883 * 119.99950 * 300.19693 * 19 17 16 22 22 N 1.31520 * 119.99806 * 359.72400 * 21 19 17 23 23 Si 1.86796 * 120.00302 * 179.71974 * 21 19 17 24 24 H 1.48507 * 109.46699 * 0.02562 * 23 21 19 25 25 H 1.48503 * 109.46887 * 119.99588 * 23 21 19 26 26 H 1.48495 * 109.47484 * 240.00244 * 23 21 19 27 27 C 1.46854 * 110.99418 * 239.10110 * 13 12 8 28 28 N 1.32058 * 120.72992 * 359.43454 * 12 8 7 29 29 H 1.08997 * 109.47220 * 299.99650 * 1 2 3 30 30 H 1.09004 * 109.46990 * 59.99953 * 1 2 3 31 31 H 1.09000 * 109.46822 * 179.97438 * 1 2 3 32 32 H 1.07991 * 120.39043 * 359.97438 * 6 5 3 33 33 H 1.08002 * 120.70335 * 180.02562 * 7 6 5 34 34 H 1.09001 * 109.46745 * 65.81839 * 14 13 12 35 35 H 1.08994 * 109.45699 * 305.84499 * 14 13 12 36 36 H 1.08999 * 109.50565 * 180.87305 * 15 14 13 37 37 H 1.09005 * 109.53347 * 60.78262 * 15 14 13 38 38 H 1.08998 * 109.52010 * 297.74518 * 16 15 14 39 39 H 1.09000 * 109.57291 * 177.59020 * 16 15 14 40 40 H 0.96999 * 119.99752 * 179.97438 * 22 21 19 41 41 H 1.08999 * 109.49621 * 54.15942 * 27 13 12 42 42 H 1.09005 * 109.42753 * 294.19587 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0634 1.2002 0.0000 4 8 1.4020 2.2185 0.0005 5 6 3.5418 1.2777 -0.0006 6 6 4.1668 2.5213 -0.0011 7 6 5.5534 2.5828 -0.0011 8 6 6.2682 1.3991 0.0052 9 7 7.7483 1.4190 0.0118 10 8 8.3425 2.4776 0.1114 11 8 8.3718 0.3770 -0.0825 12 6 5.5798 0.1860 -0.0004 13 7 6.2913 -1.0079 -0.0002 14 6 6.0606 -1.7578 1.2411 15 6 6.9677 -2.9901 1.2702 16 6 6.6628 -3.8710 0.0555 17 6 6.8640 -3.0521 -1.2225 18 1 7.9055 -2.7385 -1.2936 19 6 6.5091 -3.8942 -2.4208 20 1 5.7190 -3.5800 -3.0866 21 6 7.1892 -5.0687 -2.6639 22 7 8.1514 -5.4513 -1.8529 23 14 6.7441 -6.1165 -4.1448 24 1 5.6364 -5.4701 -4.8935 25 1 7.9283 -6.2495 -5.0309 26 1 6.3140 -7.4623 -3.6878 27 6 5.9606 -1.8176 -1.1799 28 7 4.2594 0.1594 -0.0004 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 3.5797 3.4277 -0.0015 33 1 6.0632 3.5350 -0.0011 34 1 5.0182 -2.0730 1.2866 35 1 6.2852 -1.1212 2.0968 36 1 6.7852 -3.5548 2.1844 37 1 8.0109 -2.6755 1.2390 38 1 5.6309 -4.2181 0.1071 39 1 7.3356 -4.7286 0.0484 40 1 8.6296 -6.2778 -2.0237 41 1 6.1126 -1.2250 -2.0821 42 1 4.9185 -2.1320 -1.1234 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596329154.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:23:59 Heat of formation + Delta-G solvation = -24.138924 kcal Electronic energy + Delta-G solvation = -29679.021738 eV Core-core repulsion = 25435.688167 eV Total energy + Delta-G solvation = -4243.333571 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.136 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.20423 -41.22222 -40.26630 -38.18311 -36.90835 -36.24510 -34.18353 -33.58922 -32.32120 -30.34156 -29.92930 -28.66118 -26.88909 -25.03592 -24.87964 -23.81103 -22.43200 -21.65939 -21.36479 -19.32356 -19.08558 -18.68760 -18.31935 -17.64259 -17.34661 -16.85205 -16.83141 -16.36307 -15.61888 -15.01476 -14.73670 -14.51893 -14.17225 -14.05073 -13.86044 -13.57378 -13.35489 -12.76525 -12.58153 -12.49737 -12.43316 -11.87105 -11.42038 -11.32738 -11.17772 -11.01124 -10.98052 -10.87899 -10.80811 -10.78174 -10.71612 -10.44037 -10.18305 -9.99562 -9.75918 -9.53427 -9.19750 -8.76616 -8.40510 -8.20893 -5.98436 -4.04641 -0.71046 0.40100 1.02843 1.37997 1.89174 2.06405 3.02062 3.23753 3.30193 3.38610 3.41957 3.67620 4.03041 4.13459 4.25181 4.43541 4.63639 4.76051 4.85911 4.97845 5.05682 5.22680 5.31503 5.35865 5.50189 5.65036 5.80588 5.90054 6.04221 6.26914 6.36167 6.45273 6.58373 6.66880 6.79398 6.88647 7.00693 7.21744 7.27203 7.33844 7.53125 7.75134 7.86848 8.05533 8.14178 8.42860 8.98384 9.59571 11.07616 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.009992 B = 0.004249 C = 0.003348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2801.581247 B = 6587.748112 C = 8361.148288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.326 6.326 3 C 0.524 3.476 4 O -0.490 6.490 5 C 0.147 3.853 6 C -0.124 4.124 7 C -0.013 4.013 8 C -0.054 4.054 9 N 0.025 4.975 10 O -0.199 6.199 11 O -0.061 6.061 12 C 0.378 3.622 13 N -0.479 5.479 14 C 0.071 3.929 15 C -0.115 4.115 16 C -0.111 4.111 17 C 0.058 3.942 18 H 0.044 0.956 19 C -0.515 4.515 20 H 0.053 0.947 21 C 0.066 3.934 22 N -0.885 5.885 23 Si 0.890 3.110 24 H -0.275 1.275 25 H -0.284 1.284 26 H -0.285 1.285 27 C 0.075 3.925 28 N -0.451 5.451 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.108 0.892 32 H 0.171 0.829 33 H 0.176 0.824 34 H 0.046 0.954 35 H 0.055 0.945 36 H 0.054 0.946 37 H 0.070 0.930 38 H 0.032 0.968 39 H 0.096 0.904 40 H 0.260 0.740 41 H 0.058 0.942 42 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.909 14.176 6.853 19.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.240 6.240 3 C 0.366 3.634 4 O -0.376 6.376 5 C 0.007 3.993 6 C -0.145 4.145 7 C -0.040 4.040 8 C -0.141 4.141 9 N 0.549 4.451 10 O -0.399 6.399 11 O -0.298 6.298 12 C 0.146 3.854 13 N -0.203 5.203 14 C -0.055 4.055 15 C -0.153 4.153 16 C -0.149 4.149 17 C 0.039 3.961 18 H 0.062 0.938 19 C -0.554 4.554 20 H 0.072 0.928 21 C -0.136 4.136 22 N -0.523 5.523 23 Si 0.718 3.282 24 H -0.200 1.200 25 H -0.210 1.210 26 H -0.211 1.211 27 C -0.049 4.049 28 N -0.167 5.167 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.127 0.873 32 H 0.189 0.811 33 H 0.193 0.807 34 H 0.064 0.936 35 H 0.074 0.926 36 H 0.072 0.928 37 H 0.089 0.911 38 H 0.051 0.949 39 H 0.114 0.886 40 H 0.070 0.930 41 H 0.076 0.924 42 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -11.717 13.755 6.866 19.330 hybrid contribution -0.568 0.099 -0.801 0.987 sum -12.285 13.855 6.065 19.485 Atomic orbital electron populations 1.23440 0.75307 1.04548 1.02705 1.86733 1.23779 1.30899 1.82638 1.20624 0.87408 0.82227 0.73125 1.90875 1.65604 1.36104 1.45052 1.20404 0.91599 0.89957 0.97306 1.22043 0.93570 0.98997 0.99873 1.21496 0.93395 0.98397 0.90677 1.22410 0.82708 0.96010 1.12994 1.43148 1.02043 1.00935 0.98938 1.94513 1.69300 1.20287 1.55826 1.94747 1.66236 1.21116 1.47695 1.20180 0.85745 0.92704 0.86751 1.60720 1.49919 1.03253 1.06457 1.22135 0.99552 0.95492 0.88320 1.21694 0.99581 0.94352 0.99699 1.21682 1.00404 1.00009 0.92854 1.18700 0.95424 0.88453 0.93555 0.93779 1.21092 1.18771 1.06162 1.09338 0.92831 1.24896 0.94872 0.97507 0.96335 1.69892 1.22511 1.23148 1.36779 0.86573 0.78306 0.80304 0.83005 1.19951 1.21005 1.21074 1.22509 0.99828 0.95262 0.87332 1.68491 1.07008 1.30082 1.11115 0.91534 0.91465 0.87329 0.81122 0.80685 0.93558 0.92610 0.92784 0.91109 0.94877 0.88606 0.93018 0.92360 0.93863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.56 101.05 1.07 1.33 16 2 O -0.33 -3.97 10.38 -40.47 -0.42 -4.39 16 3 C 0.52 6.41 7.95 34.75 0.28 6.69 16 4 O -0.49 -6.12 16.10 -19.21 -0.31 -6.43 16 5 C 0.15 1.82 6.74 -83.04 -0.56 1.26 16 6 C -0.12 -1.18 9.63 -39.02 -0.38 -1.56 16 7 C -0.01 -0.13 9.66 -39.36 -0.38 -0.51 16 8 C -0.05 -0.77 6.89 -79.46 -0.55 -1.32 16 9 N 0.02 0.40 4.45 34.20 0.15 0.55 16 10 O -0.20 -3.13 18.52 -29.46 -0.55 -3.68 16 11 O -0.06 -1.14 17.15 -29.46 -0.51 -1.64 16 12 C 0.38 6.07 5.29 -155.20 -0.82 5.24 16 13 N -0.48 -8.76 2.53 -173.22 -0.44 -9.20 16 14 C 0.07 1.21 5.29 -3.83 -0.02 1.19 16 15 C -0.12 -2.14 6.09 -26.65 -0.16 -2.31 16 16 C -0.11 -2.52 5.02 -26.61 -0.13 -2.65 16 17 C 0.06 1.39 2.26 -91.70 -0.21 1.18 16 18 H 0.04 1.19 8.14 -51.93 -0.42 0.77 16 19 C -0.51 -13.75 8.57 -34.44 -0.30 -14.04 16 20 H 0.05 1.43 7.74 -52.49 -0.41 1.02 16 21 C 0.07 1.77 5.30 -17.82 -0.09 1.68 16 22 N -0.88 -24.60 11.35 55.43 0.63 -23.98 16 23 Si 0.89 20.94 29.54 -169.99 -5.02 15.91 16 24 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 25 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 26 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 27 C 0.08 1.57 4.46 -3.83 -0.02 1.55 16 28 N -0.45 -6.83 9.48 -9.01 -0.09 -6.91 16 29 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.11 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.17 1.16 7.63 -52.49 -0.40 0.76 16 33 H 0.18 1.28 7.69 -52.49 -0.40 0.87 16 34 H 0.05 0.80 8.07 -51.93 -0.42 0.38 16 35 H 0.06 0.86 8.10 -51.93 -0.42 0.44 16 36 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 37 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 38 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 39 H 0.10 2.43 6.14 -51.93 -0.32 2.11 16 40 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 41 H 0.06 1.24 8.11 -51.93 -0.42 0.82 16 42 H 0.04 0.92 7.98 -51.93 -0.41 0.51 16 LS Contribution 361.30 15.07 5.44 5.44 Total: -1.00 -30.13 361.30 -8.67 -38.80 By element: Atomic # 1 Polarization: 3.07 SS G_CDS: -5.30 Total: -2.22 kcal Atomic # 6 Polarization: 0.02 SS G_CDS: -2.27 Total: -2.25 kcal Atomic # 7 Polarization: -39.80 SS G_CDS: 0.26 Total: -39.54 kcal Atomic # 8 Polarization: -14.36 SS G_CDS: -1.78 Total: -16.14 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -30.13 -8.67 -38.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596329154.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.656 kcal (2) G-P(sol) polarization free energy of solvation -30.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds