Wall clock time and date at job start Tue Mar 31 2020 19:23:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34692 * 116.99450 * 2 1 4 4 O 1.21434 * 120.00087 * 0.02562 * 3 2 1 5 5 C 1.48047 * 119.99624 * 180.02562 * 3 2 1 6 6 C 1.39180 * 119.68114 * 179.97438 * 5 3 2 7 7 C 1.38799 * 119.21924 * 179.97438 * 6 5 3 8 8 C 1.38286 * 118.58600 * 359.72698 * 7 6 5 9 9 N 1.48019 * 120.35461 * 180.28348 * 8 7 6 10 10 O 1.21805 * 119.99186 * 5.42827 * 9 8 7 11 11 O 1.21796 * 120.00324 * 185.43341 * 9 8 7 12 12 C 1.39485 * 119.29604 * 0.55406 * 8 7 6 13 13 N 1.38982 * 119.62963 * 179.70797 * 12 8 7 14 14 C 1.46844 * 110.99687 * 114.85427 * 13 12 8 15 15 C 1.53042 * 109.52160 * 185.83276 * 14 13 12 16 16 C 1.53116 * 109.27921 * 300.82227 * 15 14 13 17 17 C 1.53116 * 109.16424 * 57.65270 * 16 15 14 18 18 H 1.09000 * 109.50508 * 62.32191 * 17 16 15 19 19 C 1.50697 * 109.50684 * 182.40564 * 17 16 15 20 20 H 1.07998 * 120.00085 * 119.91581 * 19 17 16 21 21 C 1.37883 * 119.99950 * 300.19693 * 19 17 16 22 22 N 1.31520 * 119.99806 * 359.72400 * 21 19 17 23 23 Si 1.86796 * 120.00302 * 179.71974 * 21 19 17 24 24 H 1.48507 * 109.46699 * 0.02562 * 23 21 19 25 25 H 1.48503 * 109.46887 * 119.99588 * 23 21 19 26 26 H 1.48495 * 109.47484 * 240.00244 * 23 21 19 27 27 C 1.46854 * 110.99418 * 239.10110 * 13 12 8 28 28 N 1.32058 * 120.72992 * 359.43454 * 12 8 7 29 29 H 1.08997 * 109.47220 * 299.99650 * 1 2 3 30 30 H 1.09004 * 109.46990 * 59.99953 * 1 2 3 31 31 H 1.09000 * 109.46822 * 179.97438 * 1 2 3 32 32 H 1.07991 * 120.39043 * 359.97438 * 6 5 3 33 33 H 1.08002 * 120.70335 * 180.02562 * 7 6 5 34 34 H 1.09001 * 109.46745 * 65.81839 * 14 13 12 35 35 H 1.08994 * 109.45699 * 305.84499 * 14 13 12 36 36 H 1.08999 * 109.50565 * 180.87305 * 15 14 13 37 37 H 1.09005 * 109.53347 * 60.78262 * 15 14 13 38 38 H 1.08998 * 109.52010 * 297.74518 * 16 15 14 39 39 H 1.09000 * 109.57291 * 177.59020 * 16 15 14 40 40 H 0.96999 * 119.99752 * 179.97438 * 22 21 19 41 41 H 1.08999 * 109.49621 * 54.15942 * 27 13 12 42 42 H 1.09005 * 109.42753 * 294.19587 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0634 1.2002 0.0000 4 8 1.4020 2.2185 0.0005 5 6 3.5418 1.2777 -0.0006 6 6 4.1668 2.5213 -0.0011 7 6 5.5534 2.5828 -0.0011 8 6 6.2682 1.3991 0.0052 9 7 7.7483 1.4190 0.0118 10 8 8.3425 2.4776 0.1114 11 8 8.3718 0.3770 -0.0825 12 6 5.5798 0.1860 -0.0004 13 7 6.2913 -1.0079 -0.0002 14 6 6.0606 -1.7578 1.2411 15 6 6.9677 -2.9901 1.2702 16 6 6.6628 -3.8710 0.0555 17 6 6.8640 -3.0521 -1.2225 18 1 7.9055 -2.7385 -1.2936 19 6 6.5091 -3.8942 -2.4208 20 1 5.7190 -3.5800 -3.0866 21 6 7.1892 -5.0687 -2.6639 22 7 8.1514 -5.4513 -1.8529 23 14 6.7441 -6.1165 -4.1448 24 1 5.6364 -5.4701 -4.8935 25 1 7.9283 -6.2495 -5.0309 26 1 6.3140 -7.4623 -3.6878 27 6 5.9606 -1.8176 -1.1799 28 7 4.2594 0.1594 -0.0004 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 3.5797 3.4277 -0.0015 33 1 6.0632 3.5350 -0.0011 34 1 5.0182 -2.0730 1.2866 35 1 6.2852 -1.1212 2.0968 36 1 6.7852 -3.5548 2.1844 37 1 8.0109 -2.6755 1.2390 38 1 5.6309 -4.2181 0.1071 39 1 7.3356 -4.7286 0.0484 40 1 8.6296 -6.2778 -2.0237 41 1 6.1126 -1.2250 -2.0821 42 1 4.9185 -2.1320 -1.1234 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596329154.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:23:59 Heat of formation + Delta-G solvation = -40.290293 kcal Electronic energy + Delta-G solvation = -29679.722114 eV Core-core repulsion = 25435.688167 eV Total energy + Delta-G solvation = -4244.033947 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.136 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.37262 -42.27016 -41.30684 -39.58366 -37.81199 -37.50476 -35.83679 -34.62023 -33.98352 -31.84405 -31.52698 -29.49519 -27.83918 -27.00031 -26.19024 -24.87511 -23.71616 -23.28032 -22.50055 -20.54812 -20.45622 -19.97932 -19.40325 -18.87375 -18.55298 -18.22782 -17.72400 -17.70085 -17.05156 -16.50621 -16.15457 -15.52409 -15.39703 -15.24286 -15.09745 -14.63379 -14.45074 -14.36525 -14.32871 -14.00717 -13.47639 -13.14138 -12.86840 -12.70403 -12.65477 -12.57162 -12.32096 -12.21765 -12.10017 -11.94895 -11.92206 -11.89151 -11.73338 -11.56740 -11.41524 -11.01024 -10.86280 -10.63986 -10.38019 -9.72874 -8.06420 -6.20288 -1.77010 -0.54321 -0.15247 0.24186 0.89953 1.23477 1.41498 1.43390 1.54046 2.02965 2.08539 2.45566 2.66378 3.04943 3.21058 3.23458 3.34869 3.57007 4.00115 4.06959 4.13038 4.19181 4.27531 4.28325 4.33760 4.50073 4.54168 4.63815 4.66291 4.79609 4.85787 4.98359 4.99564 5.07605 5.21493 5.32105 5.47677 5.64688 5.70659 5.86522 5.98185 6.06898 6.16876 6.35940 6.39644 6.57029 6.89919 7.47052 8.98639 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.009992 B = 0.004249 C = 0.003348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2801.581247 B = 6587.748112 C = 8361.148288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.347 6.347 3 C 0.527 3.473 4 O -0.493 6.493 5 C 0.135 3.865 6 C -0.092 4.092 7 C 0.011 3.989 8 C -0.064 4.064 9 N 0.029 4.971 10 O -0.153 6.153 11 O -0.146 6.146 12 C 0.357 3.643 13 N -0.487 5.487 14 C 0.077 3.923 15 C -0.107 4.107 16 C -0.102 4.102 17 C 0.058 3.942 18 H 0.005 0.995 19 C -0.535 4.535 20 H 0.048 0.952 21 C 0.019 3.981 22 N -0.911 5.911 23 Si 0.953 3.047 24 H -0.270 1.270 25 H -0.281 1.281 26 H -0.278 1.278 27 C 0.097 3.903 28 N -0.472 5.472 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.126 0.874 32 H 0.211 0.789 33 H 0.216 0.784 34 H 0.046 0.954 35 H 0.077 0.923 36 H 0.080 0.920 37 H 0.057 0.943 38 H 0.027 0.973 39 H 0.065 0.935 40 H 0.261 0.739 41 H 0.046 0.954 42 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.879 16.896 7.303 22.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.262 6.262 3 C 0.369 3.631 4 O -0.380 6.380 5 C -0.003 4.003 6 C -0.113 4.113 7 C -0.015 4.015 8 C -0.152 4.152 9 N 0.550 4.450 10 O -0.370 6.370 11 O -0.363 6.363 12 C 0.124 3.876 13 N -0.211 5.211 14 C -0.049 4.049 15 C -0.144 4.144 16 C -0.140 4.140 17 C 0.039 3.961 18 H 0.023 0.977 19 C -0.574 4.574 20 H 0.067 0.933 21 C -0.180 4.180 22 N -0.550 5.550 23 Si 0.779 3.221 24 H -0.195 1.195 25 H -0.207 1.207 26 H -0.204 1.204 27 C -0.028 4.028 28 N -0.188 5.188 29 H 0.095 0.905 30 H 0.091 0.909 31 H 0.145 0.855 32 H 0.228 0.772 33 H 0.233 0.767 34 H 0.064 0.936 35 H 0.096 0.904 36 H 0.098 0.902 37 H 0.076 0.924 38 H 0.046 0.954 39 H 0.083 0.917 40 H 0.070 0.930 41 H 0.064 0.936 42 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -13.686 16.305 7.309 22.507 hybrid contribution -0.081 -0.480 -0.912 1.034 sum -13.767 15.825 6.397 21.929 Atomic orbital electron populations 1.23739 0.73252 1.06120 1.03521 1.86716 1.25963 1.31110 1.82422 1.20553 0.87285 0.82270 0.73021 1.90869 1.65614 1.36069 1.45469 1.20739 0.91796 0.90391 0.97369 1.22469 0.93298 0.99101 0.96402 1.22000 0.93388 0.98208 0.87955 1.22497 0.81106 0.96955 1.14620 1.43420 1.03040 1.00521 0.98050 1.94452 1.70114 1.19913 1.52475 1.94796 1.67330 1.21636 1.52488 1.19944 0.86249 0.92065 0.89300 1.60485 1.51247 1.03810 1.05550 1.22065 0.98865 0.95060 0.88863 1.21570 0.99272 0.94763 0.98819 1.21455 0.99057 0.99414 0.94089 1.18559 0.93792 0.89976 0.93801 0.97707 1.21423 1.18768 1.06904 1.10294 0.93346 1.25645 0.94790 0.98649 0.98933 1.70031 1.23252 1.23507 1.38184 0.85593 0.78070 0.78714 0.79764 1.19461 1.20705 1.20389 1.21995 0.98139 0.94136 0.88540 1.68326 1.06571 1.31916 1.12009 0.90485 0.90850 0.85546 0.77223 0.76697 0.93583 0.90415 0.90181 0.92388 0.95420 0.91675 0.92956 0.93589 0.94639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 10.56 113.37 1.20 1.57 16 2 O -0.35 -7.95 10.38 -56.01 -0.58 -8.53 16 3 C 0.53 11.66 7.95 70.42 0.56 12.22 16 4 O -0.49 -10.80 16.10 20.05 0.32 -10.48 16 5 C 0.14 3.02 6.74 41.82 0.28 3.30 16 6 C -0.09 -1.35 9.63 22.63 0.22 -1.13 16 7 C 0.01 0.17 9.66 22.42 0.22 0.39 16 8 C -0.06 -1.71 6.89 36.69 0.25 -1.46 16 9 N 0.03 0.93 4.45 -45.72 -0.20 0.73 16 10 O -0.15 -4.43 18.52 18.88 0.35 -4.08 16 11 O -0.15 -5.73 17.15 18.89 0.32 -5.41 16 12 C 0.36 11.28 5.29 133.26 0.70 11.99 16 13 N -0.49 -18.38 2.53 -701.94 -1.78 -20.16 16 14 C 0.08 2.68 5.29 86.33 0.46 3.13 16 15 C -0.11 -4.08 6.09 30.65 0.19 -3.90 16 16 C -0.10 -4.85 5.02 30.67 0.15 -4.70 16 17 C 0.06 2.97 2.26 -11.49 -0.03 2.94 16 18 H 0.00 0.28 8.14 -2.39 -0.02 0.26 16 19 C -0.54 -29.91 8.57 25.60 0.22 -29.69 16 20 H 0.05 2.68 7.74 -2.91 -0.02 2.66 16 21 C 0.02 1.07 5.30 84.66 0.45 1.51 16 22 N -0.91 -52.75 11.35 21.45 0.24 -52.51 16 23 Si 0.95 43.91 29.54 68.60 2.03 45.94 16 24 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 25 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 26 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 27 C 0.10 4.29 4.46 86.32 0.38 4.67 16 28 N -0.47 -13.82 9.48 -182.41 -1.73 -15.55 16 29 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.07 0.94 8.14 -2.38 -0.02 0.92 16 31 H 0.13 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.21 1.52 7.63 -2.92 -0.02 1.50 16 33 H 0.22 1.76 7.69 -2.91 -0.02 1.74 16 34 H 0.05 1.60 8.07 -2.39 -0.02 1.58 16 35 H 0.08 2.36 8.10 -2.39 -0.02 2.34 16 36 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16 37 H 0.06 2.36 8.14 -2.38 -0.02 2.34 16 38 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 39 H 0.06 3.49 6.14 -2.39 -0.01 3.48 16 40 H 0.26 14.35 8.31 -92.71 -0.77 13.58 16 41 H 0.05 2.07 8.11 -2.39 -0.02 2.05 16 42 H 0.04 1.58 7.98 -2.38 -0.02 1.56 16 Total: -1.00 -69.71 361.30 5.28 -64.43 By element: Atomic # 1 Polarization: 3.72 SS G_CDS: 1.06 Total: 4.77 kcal Atomic # 6 Polarization: -4.41 SS G_CDS: 5.26 Total: 0.85 kcal Atomic # 7 Polarization: -84.02 SS G_CDS: -3.47 Total: -87.49 kcal Atomic # 8 Polarization: -28.91 SS G_CDS: 0.42 Total: -28.50 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.94 kcal Total: -69.71 5.28 -64.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596329154.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.137 kcal (2) G-P(sol) polarization free energy of solvation -69.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds