Wall clock time and date at job start Tue Mar 31 2020 19:25:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34761 * 116.99876 * 2 1 4 4 O 1.21507 * 119.99823 * 359.97438 * 3 2 1 5 5 C 1.47395 * 120.00086 * 180.02562 * 3 2 1 6 6 C 1.39664 * 120.48277 * 359.71128 * 5 3 2 7 7 N 1.31634 * 120.50742 * 179.73307 * 6 5 3 8 8 C 1.32634 * 121.64485 * 0.58718 * 7 6 5 9 9 N 1.38437 * 119.53577 * 179.69883 * 8 7 6 10 10 C 1.46834 * 111.00018 * 272.77091 * 9 8 7 11 11 C 1.53040 * 109.52190 * 185.83765 * 10 9 8 12 12 C 1.53118 * 109.27612 * 300.81892 * 11 10 9 13 13 C 1.53113 * 109.16207 * 57.65705 * 12 11 10 14 14 H 1.08996 * 109.50796 * 62.28270 * 13 12 11 15 15 C 1.50707 * 109.50454 * 182.40417 * 13 12 11 16 16 H 1.07995 * 119.99697 * 119.80034 * 15 13 12 17 17 C 1.37877 * 119.99701 * 299.79929 * 15 13 12 18 18 N 1.31510 * 119.99964 * 0.02562 * 17 15 13 19 19 Si 1.86801 * 119.99633 * 180.02562 * 17 15 13 20 20 H 1.48499 * 109.47448 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47115 * 120.00185 * 19 17 15 22 22 H 1.48501 * 109.47084 * 240.00128 * 19 17 15 23 23 C 1.46848 * 110.99634 * 36.98089 * 9 8 7 24 24 C 1.39380 * 120.93543 * 359.68112 * 8 7 6 25 25 N 1.48020 * 120.30803 * 180.02562 * 24 8 7 26 26 O 1.21796 * 120.00266 * 185.53048 * 25 24 8 27 27 O 1.21803 * 119.99871 * 5.52325 * 25 24 8 28 28 C 1.36865 * 119.38382 * 0.02562 * 24 8 7 29 29 H 1.09003 * 109.46842 * 299.99685 * 1 2 3 30 30 H 1.08996 * 109.47835 * 59.99851 * 1 2 3 31 31 H 1.09007 * 109.46999 * 180.02562 * 1 2 3 32 32 H 1.07997 * 119.74268 * 0.02562 * 6 5 3 33 33 H 1.09000 * 109.46693 * 305.85022 * 10 9 8 34 34 H 1.08998 * 109.46545 * 65.82261 * 10 9 8 35 35 H 1.09002 * 109.50397 * 180.87795 * 11 10 9 36 36 H 1.08996 * 109.53984 * 60.78242 * 11 10 9 37 37 H 1.09006 * 109.52455 * 297.74776 * 12 11 10 38 38 H 1.09004 * 109.57244 * 177.59479 * 12 11 10 39 39 H 0.97002 * 119.99642 * 180.02562 * 18 17 15 40 40 H 1.09007 * 109.45901 * 294.17641 * 23 9 8 41 41 H 1.09002 * 109.46227 * 54.14087 * 23 9 8 42 42 H 1.08001 * 120.75371 * 180.02562 * 28 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2007 0.0000 4 8 1.4019 2.2198 -0.0005 5 6 3.5357 1.2779 -0.0006 6 6 4.3062 0.1131 0.0050 7 7 5.6208 0.1814 -0.0008 8 6 6.2571 1.3452 -0.0004 9 7 7.6413 1.3661 -0.0003 10 6 8.1684 1.3074 1.3689 11 6 9.6889 1.4787 1.3394 12 6 10.3064 0.3669 0.4867 13 6 9.7049 0.4199 -0.9204 14 1 9.9538 1.3730 -1.3870 15 6 10.2637 -0.7080 -1.7492 16 1 9.6006 -1.4512 -2.1667 17 6 11.6214 -0.7910 -1.9744 18 7 12.4288 0.1138 -1.4656 19 14 12.3139 -2.1886 -3.0024 20 1 11.2052 -3.0667 -3.4549 21 1 13.0188 -1.6314 -4.1846 22 1 13.2682 -2.9791 -2.1841 23 6 8.1840 0.2793 -0.8254 24 6 5.5519 2.5474 -0.0005 25 7 6.2762 3.8383 -0.0006 26 8 5.6586 4.8832 0.1010 27 8 7.4898 3.8556 -0.1022 28 6 4.1834 2.5233 -0.0004 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 3.8198 -0.8511 0.0093 33 1 7.7245 2.1058 1.9635 34 1 7.9201 0.3433 1.8126 35 1 10.0815 1.4195 2.3545 36 1 9.9381 2.4485 0.9089 37 1 10.0908 -0.6013 0.9388 38 1 11.3855 0.5090 0.4272 39 1 13.3840 0.0556 -1.6244 40 1 7.9356 -0.6801 -0.3713 41 1 7.7513 0.3309 -1.8245 42 1 3.6149 3.4415 -0.0008 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596330153.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:25:24 Heat of formation + Delta-G solvation = -28.178728 kcal Electronic energy + Delta-G solvation = -29340.479973 eV Core-core repulsion = 25096.971223 eV Total energy + Delta-G solvation = -4243.508750 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.136 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -42.27133 -41.18827 -40.37474 -38.28134 -36.94592 -36.26445 -34.28380 -33.53732 -32.44339 -30.78776 -30.06305 -28.20172 -26.69473 -25.24756 -25.11255 -23.69812 -22.60351 -21.70474 -21.46319 -19.56043 -18.97181 -18.56077 -17.86736 -17.68966 -17.38228 -17.15492 -16.86064 -16.52568 -16.03976 -15.14540 -14.71305 -14.42468 -14.18342 -14.10651 -13.94500 -13.67808 -13.38444 -12.87074 -12.66273 -12.57682 -12.50116 -11.94502 -11.53192 -11.30539 -11.30274 -11.01661 -10.98976 -10.92176 -10.88257 -10.82784 -10.73853 -10.36658 -10.23162 -10.02185 -9.87425 -9.61242 -9.27969 -8.81436 -8.45364 -8.25917 -6.02484 -4.09049 -0.39168 -0.02125 1.26210 1.35349 1.93914 2.11858 2.99952 3.23274 3.27871 3.36545 3.39878 3.80106 3.98100 4.06767 4.30085 4.37117 4.47527 4.65592 4.74789 4.81574 5.08627 5.18686 5.26022 5.30235 5.44964 5.51776 5.76571 5.77653 5.93951 6.23228 6.30434 6.43807 6.51144 6.62041 6.73266 6.81606 7.08713 7.14234 7.19706 7.28022 7.44841 7.70876 7.85618 7.98334 8.08770 8.37828 8.94176 9.55660 11.03707 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.014690 B = 0.003259 C = 0.002842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1905.657291 B = 8590.517133 C = 9850.196581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.352 6.352 3 C 0.524 3.476 4 O -0.498 6.498 5 C -0.212 4.212 6 C 0.225 3.775 7 N -0.504 5.504 8 C 0.418 3.582 9 N -0.475 5.475 10 C 0.080 3.920 11 C -0.117 4.117 12 C -0.113 4.113 13 C 0.056 3.944 14 H 0.041 0.959 15 C -0.516 4.516 16 H 0.055 0.945 17 C 0.065 3.935 18 N -0.885 5.885 19 Si 0.891 3.109 20 H -0.274 1.274 21 H -0.284 1.284 22 H -0.284 1.284 23 C 0.070 3.930 24 C -0.105 4.105 25 N 0.032 4.968 26 O -0.196 6.196 27 O -0.078 6.078 28 C 0.060 3.940 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.106 0.894 32 H 0.188 0.812 33 H 0.058 0.942 34 H 0.045 0.955 35 H 0.057 0.943 36 H 0.075 0.925 37 H 0.033 0.967 38 H 0.097 0.903 39 H 0.260 0.740 40 H 0.050 0.950 41 H 0.062 0.938 42 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.966 -0.083 6.020 20.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.269 6.269 3 C 0.367 3.633 4 O -0.386 6.386 5 C -0.217 4.217 6 C 0.064 3.936 7 N -0.218 5.218 8 C 0.186 3.814 9 N -0.195 5.195 10 C -0.044 4.044 11 C -0.154 4.154 12 C -0.151 4.151 13 C 0.037 3.963 14 H 0.059 0.941 15 C -0.555 4.555 16 H 0.073 0.927 17 C -0.137 4.137 18 N -0.523 5.523 19 Si 0.719 3.281 20 H -0.199 1.199 21 H -0.210 1.210 22 H -0.211 1.211 23 C -0.055 4.055 24 C -0.193 4.193 25 N 0.555 4.445 26 O -0.398 6.398 27 O -0.311 6.311 28 C 0.034 3.966 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.125 0.875 32 H 0.205 0.795 33 H 0.077 0.923 34 H 0.064 0.936 35 H 0.075 0.925 36 H 0.094 0.906 37 H 0.052 0.948 38 H 0.115 0.885 39 H 0.070 0.930 40 H 0.069 0.931 41 H 0.080 0.920 42 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -19.749 -0.613 5.851 20.606 hybrid contribution -0.485 -0.333 -0.380 0.700 sum -20.234 -0.945 5.471 20.982 Atomic orbital electron populations 1.23363 0.75044 1.04206 1.02951 1.86522 1.24250 1.31821 1.84272 1.20423 0.87887 0.81936 0.73023 1.90893 1.66396 1.35878 1.45470 1.19856 0.91560 0.94233 1.16088 1.23631 0.88572 0.98692 0.82754 1.68650 1.10348 1.26168 1.16632 1.20437 0.93073 0.85929 0.81929 1.59965 0.97417 1.48306 1.13776 1.22116 0.98496 0.99620 0.84175 1.21725 0.91010 1.02581 1.00123 1.21709 1.03701 0.94138 0.95528 1.18723 0.85789 0.98339 0.93456 0.94096 1.21086 0.92206 1.10380 1.31792 0.92663 1.24912 0.97070 0.95993 0.95718 1.69889 1.03658 1.34254 1.44548 0.86553 0.79037 0.82322 0.80166 1.19867 1.21017 1.21055 1.22555 0.99618 0.89156 0.94204 1.21513 0.92487 0.85629 1.19684 1.43091 1.01586 1.01280 0.98557 1.94528 1.69457 1.20101 1.55749 1.94710 0.94124 1.93558 1.48757 1.21162 0.91527 0.99806 0.84129 0.91533 0.91496 0.87522 0.79476 0.92333 0.93630 0.92485 0.90639 0.94789 0.88503 0.92963 0.93119 0.91976 0.80709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.20 10.57 101.05 1.07 1.27 16 2 O -0.35 -2.86 9.83 -40.66 -0.40 -3.26 16 3 C 0.52 5.35 7.89 34.46 0.27 5.63 16 4 O -0.50 -6.21 16.20 -19.27 -0.31 -6.53 16 5 C -0.21 -2.25 5.89 -104.84 -0.62 -2.87 16 6 C 0.23 2.34 10.79 -17.10 -0.18 2.15 16 7 N -0.50 -7.04 9.22 -12.13 -0.11 -7.15 16 8 C 0.42 6.55 5.53 -155.28 -0.86 5.69 16 9 N -0.47 -8.48 2.67 -173.28 -0.46 -8.95 16 10 C 0.08 1.33 4.96 -3.84 -0.02 1.31 16 11 C -0.12 -2.11 6.09 -26.65 -0.16 -2.28 16 12 C -0.11 -2.49 5.03 -26.61 -0.13 -2.62 16 13 C 0.06 1.32 2.26 -91.69 -0.21 1.12 16 14 H 0.04 1.09 8.14 -51.93 -0.42 0.67 16 15 C -0.52 -13.56 8.56 -34.44 -0.29 -13.85 16 16 H 0.06 1.44 7.74 -52.49 -0.41 1.03 16 17 C 0.06 1.73 5.31 -17.82 -0.09 1.64 16 18 N -0.89 -24.41 11.36 55.43 0.63 -23.78 16 19 Si 0.89 20.69 29.54 -169.99 -5.02 15.67 16 20 H -0.27 -6.29 7.11 56.52 0.40 -5.88 16 21 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 22 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 23 C 0.07 1.41 4.14 -3.83 -0.02 1.39 16 24 C -0.10 -1.54 6.84 -80.02 -0.55 -2.09 16 25 N 0.03 0.53 4.45 33.93 0.15 0.68 16 26 O -0.20 -3.24 18.50 -29.46 -0.54 -3.78 16 27 O -0.08 -1.44 16.78 -29.46 -0.49 -1.94 16 28 C 0.06 0.72 9.15 -39.28 -0.36 0.36 16 29 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.11 0.28 8.14 -51.92 -0.42 -0.14 16 32 H 0.19 1.33 7.61 -52.49 -0.40 0.93 16 33 H 0.06 0.89 8.10 -51.93 -0.42 0.47 16 34 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.07 1.45 8.14 -51.93 -0.42 1.02 16 37 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.10 2.42 6.16 -51.93 -0.32 2.10 16 39 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 40 H 0.05 1.03 7.78 -51.92 -0.40 0.62 16 41 H 0.06 1.28 8.10 -51.93 -0.42 0.86 16 42 H 0.18 1.96 7.33 -52.49 -0.38 1.58 16 LS Contribution 359.15 15.07 5.41 5.41 Total: -1.00 -29.81 359.15 -8.58 -38.39 By element: Atomic # 1 Polarization: 3.65 SS G_CDS: -5.27 Total: -1.62 kcal Atomic # 6 Polarization: -1.00 SS G_CDS: -2.16 Total: -3.16 kcal Atomic # 7 Polarization: -39.40 SS G_CDS: 0.21 Total: -39.20 kcal Atomic # 8 Polarization: -13.75 SS G_CDS: -1.75 Total: -15.50 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -29.81 -8.58 -38.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596330153.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.216 kcal (2) G-P(sol) polarization free energy of solvation -29.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds