Wall clock time and date at job start Tue Mar 31 2020 19:25:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45192 * 1 3 3 C 1.34760 * 117.00183 * 2 1 4 4 O 1.21512 * 119.99358 * 359.97438 * 3 2 1 5 5 C 1.47399 * 120.00419 * 180.27441 * 3 2 1 6 6 C 1.39661 * 120.48061 * 359.72617 * 5 3 2 7 7 N 1.31633 * 120.50990 * 180.02562 * 6 5 3 8 8 C 1.32642 * 121.64265 * 359.97438 * 7 6 5 9 9 N 1.38429 * 119.53389 * 179.97438 * 8 7 6 10 10 C 1.46846 * 110.99787 * 63.88462 * 9 8 7 11 11 C 1.53044 * 109.52389 * 174.16260 * 10 9 8 12 12 C 1.53119 * 109.27508 * 59.17624 * 11 10 9 13 13 C 1.53117 * 109.16200 * 302.34428 * 12 11 10 14 14 H 1.08997 * 109.50895 * 297.71527 * 13 12 11 15 15 C 1.50704 * 109.50103 * 177.63530 * 13 12 11 16 16 H 1.08004 * 120.00214 * 240.00094 * 15 13 12 17 17 C 1.37875 * 120.00013 * 60.00624 * 15 13 12 18 18 N 1.31519 * 120.00139 * 359.97438 * 17 15 13 19 19 Si 1.86801 * 120.00412 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.46689 * 359.97438 * 19 17 15 21 21 H 1.48496 * 109.47211 * 119.99748 * 19 17 15 22 22 H 1.48504 * 109.47127 * 239.99952 * 19 17 15 23 23 C 1.46846 * 110.99990 * 299.67600 * 9 8 7 24 24 C 1.39376 * 120.93213 * 359.97438 * 8 7 6 25 25 N 1.48020 * 120.30271 * 180.02562 * 24 8 7 26 26 O 1.21799 * 119.99993 * 179.46600 * 25 24 8 27 27 O 1.21803 * 120.00436 * 359.45291 * 25 24 8 28 28 C 1.36871 * 119.38814 * 359.75801 * 24 8 7 29 29 H 1.09007 * 109.46946 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47310 * 299.99522 * 1 2 3 31 31 H 1.09000 * 109.47435 * 60.00249 * 1 2 3 32 32 H 1.07999 * 119.74700 * 0.02562 * 6 5 3 33 33 H 1.09004 * 109.46370 * 294.17646 * 10 9 8 34 34 H 1.08995 * 109.46459 * 54.14417 * 10 9 8 35 35 H 1.08995 * 109.50231 * 179.11720 * 11 10 9 36 36 H 1.09002 * 109.50044 * 299.24088 * 11 10 9 37 37 H 1.08996 * 109.52509 * 62.25656 * 12 11 10 38 38 H 1.09005 * 109.51904 * 182.44161 * 12 11 10 39 39 H 0.96996 * 120.00513 * 180.02562 * 18 17 15 40 40 H 1.09007 * 109.46048 * 305.85067 * 23 9 8 41 41 H 1.08993 * 109.46747 * 65.81881 * 23 9 8 42 42 H 1.08008 * 120.75239 * 180.28130 * 28 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0638 1.2007 0.0000 4 8 1.4019 2.2197 -0.0005 5 6 3.5357 1.2779 -0.0061 6 6 4.3062 0.1131 -0.0062 7 7 5.6208 0.1814 -0.0111 8 6 6.2571 1.3452 -0.0167 9 7 7.6412 1.3660 -0.0212 10 6 8.1725 0.7669 -1.2521 11 6 9.6929 0.9376 -1.2892 12 6 10.3079 0.2588 -0.0622 13 6 9.7021 0.8677 1.2054 14 1 9.9496 1.9281 1.2540 15 6 10.2591 0.1652 2.4168 16 1 9.5950 -0.3482 3.0963 17 6 11.6166 0.1780 2.6576 18 7 12.4255 0.8028 1.8300 19 14 12.3071 -0.6922 4.1595 20 1 11.1969 -1.3138 4.9253 21 1 13.2608 -1.7449 3.7268 22 1 13.0122 0.2909 5.0207 23 6 8.1815 0.6989 1.1702 24 6 5.5518 2.5473 -0.0180 25 7 6.2762 3.8381 -0.0248 26 8 5.6543 4.8854 -0.0358 27 8 7.4941 3.8532 -0.0192 28 6 4.1833 2.5232 -0.0186 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 3.8198 -0.8512 -0.0021 33 1 7.9256 -0.2946 -1.2753 34 1 7.7303 1.2614 -2.1170 35 1 10.0886 0.4790 -2.1953 36 1 9.9402 1.9992 -1.2799 37 1 10.0938 -0.8095 -0.0913 38 1 11.3866 0.4152 -0.0618 39 1 13.3806 0.8115 1.9992 40 1 7.7458 1.1442 2.0647 41 1 7.9346 -0.3621 1.1357 42 1 3.6148 3.4415 -0.0242 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596330155.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:25:28 Heat of formation + Delta-G solvation = -27.259577 kcal Electronic energy + Delta-G solvation = -29341.080003 eV Core-core repulsion = 25097.611111 eV Total energy + Delta-G solvation = -4243.468893 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.136 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.23637 -41.19948 -40.38406 -38.23267 -36.97965 -36.21188 -34.26684 -33.52764 -32.43844 -30.78038 -30.02720 -28.22336 -26.67590 -25.23006 -25.07247 -23.69562 -22.62789 -21.68697 -21.45639 -19.55578 -18.95389 -18.52629 -17.87689 -17.65901 -17.33504 -17.16964 -16.88800 -16.56485 -16.02122 -15.09798 -14.73561 -14.40879 -14.19194 -14.08838 -13.98215 -13.60904 -13.40329 -12.79944 -12.67546 -12.57127 -12.48789 -11.89766 -11.54308 -11.33300 -11.26707 -11.00911 -10.95249 -10.93691 -10.83736 -10.77144 -10.73670 -10.39491 -10.21428 -10.01928 -9.79286 -9.56694 -9.23943 -8.80072 -8.44052 -8.24902 -6.00835 -4.07519 -0.43252 -0.04805 1.28186 1.36680 1.91232 2.08277 2.97963 3.24464 3.28841 3.37420 3.40620 3.77571 3.94547 4.03070 4.26692 4.38176 4.49558 4.63365 4.72740 4.79260 5.06863 5.16182 5.28957 5.33331 5.48031 5.60480 5.74091 5.85442 5.99213 6.20414 6.31850 6.47828 6.54882 6.62702 6.76235 6.93967 7.03757 7.14204 7.18221 7.29725 7.48703 7.72405 7.90261 8.02135 8.11149 8.39387 8.95505 9.56990 11.05180 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.015232 B = 0.003181 C = 0.002929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1837.757071 B = 8798.813098 C = 9557.093843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.352 6.352 3 C 0.523 3.477 4 O -0.496 6.496 5 C -0.202 4.202 6 C 0.217 3.783 7 N -0.503 5.503 8 C 0.419 3.581 9 N -0.487 5.487 10 C 0.073 3.927 11 C -0.116 4.116 12 C -0.112 4.112 13 C 0.058 3.942 14 H 0.044 0.956 15 C -0.517 4.517 16 H 0.054 0.946 17 C 0.066 3.934 18 N -0.884 5.884 19 Si 0.891 3.109 20 H -0.274 1.274 21 H -0.284 1.284 22 H -0.284 1.284 23 C 0.076 3.924 24 C -0.090 4.090 25 N 0.029 4.971 26 O -0.200 6.200 27 O -0.063 6.063 28 C 0.053 3.947 29 H 0.107 0.893 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.188 0.812 33 H 0.047 0.953 34 H 0.057 0.943 35 H 0.055 0.945 36 H 0.071 0.929 37 H 0.033 0.967 38 H 0.096 0.904 39 H 0.260 0.740 40 H 0.058 0.942 41 H 0.044 0.956 42 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.173 -2.542 -6.899 21.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.268 6.268 3 C 0.366 3.634 4 O -0.384 6.384 5 C -0.206 4.206 6 C 0.057 3.943 7 N -0.216 5.216 8 C 0.189 3.811 9 N -0.212 5.212 10 C -0.053 4.053 11 C -0.154 4.154 12 C -0.150 4.150 13 C 0.039 3.961 14 H 0.062 0.938 15 C -0.555 4.555 16 H 0.072 0.928 17 C -0.136 4.136 18 N -0.523 5.523 19 Si 0.719 3.281 20 H -0.199 1.199 21 H -0.211 1.211 22 H -0.210 1.210 23 C -0.048 4.048 24 C -0.178 4.178 25 N 0.553 4.447 26 O -0.400 6.400 27 O -0.300 6.300 28 C 0.027 3.973 29 H 0.125 0.875 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.205 0.795 33 H 0.065 0.935 34 H 0.075 0.925 35 H 0.073 0.927 36 H 0.090 0.910 37 H 0.052 0.948 38 H 0.114 0.886 39 H 0.070 0.930 40 H 0.077 0.923 41 H 0.062 0.938 42 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -20.038 -3.041 -6.908 21.413 hybrid contribution -0.510 -0.182 0.836 0.996 sum -20.548 -3.222 -6.072 21.668 Atomic orbital electron populations 1.23372 0.74969 1.04244 1.02993 1.86519 1.24310 1.31767 1.84236 1.20425 0.87873 0.81983 0.73107 1.90901 1.66360 1.35869 1.45245 1.19923 0.91632 0.94288 1.14768 1.23636 0.88693 0.98683 0.83310 1.68702 1.10393 1.26961 1.15495 1.20508 0.93464 0.85772 0.81346 1.60577 0.96910 1.57104 1.06581 1.22131 0.97954 0.96893 0.88281 1.21703 0.91439 1.02499 0.99732 1.21693 1.03648 0.96918 0.92733 1.18703 0.85475 0.98258 0.93661 0.93754 1.21086 0.92217 1.34002 1.08229 0.92798 1.24902 0.97045 0.95290 0.96397 1.69887 1.03602 1.42536 1.36251 0.86560 0.79025 0.79425 0.83100 1.19919 1.21052 1.20990 1.22529 1.00101 0.95318 0.86883 1.21652 0.92382 0.86060 1.17665 1.43077 1.01675 1.01137 0.98769 1.94529 1.69413 1.19730 1.56344 1.94734 0.93479 1.93568 1.48200 1.21215 0.91657 0.99850 0.84626 0.87490 0.91462 0.91491 0.79511 0.93491 0.92465 0.92682 0.91019 0.94844 0.88557 0.92965 0.92340 0.93801 0.80583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.19 10.56 101.05 1.07 1.26 16 2 O -0.35 -2.79 9.83 -40.65 -0.40 -3.19 16 3 C 0.52 5.27 7.89 34.46 0.27 5.54 16 4 O -0.50 -6.13 16.20 -19.28 -0.31 -6.44 16 5 C -0.20 -2.12 5.89 -104.84 -0.62 -2.73 16 6 C 0.22 2.22 10.79 -17.11 -0.18 2.03 16 7 N -0.50 -6.90 9.69 -12.13 -0.12 -7.02 16 8 C 0.42 6.56 5.27 -155.28 -0.82 5.74 16 9 N -0.49 -8.74 2.49 -173.27 -0.43 -9.17 16 10 C 0.07 1.21 5.27 -3.83 -0.02 1.19 16 11 C -0.12 -2.11 6.09 -26.65 -0.16 -2.28 16 12 C -0.11 -2.49 5.02 -26.61 -0.13 -2.62 16 13 C 0.06 1.38 2.26 -91.69 -0.21 1.18 16 14 H 0.04 1.19 8.14 -51.93 -0.42 0.77 16 15 C -0.52 -13.67 8.57 -34.44 -0.29 -13.97 16 16 H 0.05 1.42 7.75 -52.48 -0.41 1.01 16 17 C 0.07 1.76 5.30 -17.82 -0.09 1.66 16 18 N -0.88 -24.48 11.35 55.43 0.63 -23.86 16 19 Si 0.89 20.82 29.54 -169.99 -5.02 15.79 16 20 H -0.27 -6.35 7.11 56.52 0.40 -5.94 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 22 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 23 C 0.08 1.55 4.46 -3.83 -0.02 1.53 16 24 C -0.09 -1.34 6.85 -80.02 -0.55 -1.89 16 25 N 0.03 0.49 4.45 33.93 0.15 0.64 16 26 O -0.20 -3.37 18.49 -29.46 -0.54 -3.92 16 27 O -0.06 -1.20 17.12 -29.46 -0.50 -1.70 16 28 C 0.05 0.64 9.15 -39.28 -0.36 0.28 16 29 H 0.11 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 32 H 0.19 1.28 7.61 -52.49 -0.40 0.88 16 33 H 0.05 0.77 8.04 -51.93 -0.42 0.35 16 34 H 0.06 0.86 8.10 -51.93 -0.42 0.44 16 35 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 37 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.10 2.42 6.15 -51.93 -0.32 2.10 16 39 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 40 H 0.06 1.22 8.10 -51.93 -0.42 0.80 16 41 H 0.04 0.90 7.99 -51.93 -0.41 0.48 16 42 H 0.18 1.99 7.32 -52.48 -0.38 1.60 16 LS Contribution 360.21 15.07 5.43 5.43 Total: -1.00 -30.00 360.21 -8.52 -38.52 By element: Atomic # 1 Polarization: 3.27 SS G_CDS: -5.28 Total: -2.00 kcal Atomic # 6 Polarization: -0.96 SS G_CDS: -2.12 Total: -3.08 kcal Atomic # 7 Polarization: -39.64 SS G_CDS: 0.23 Total: -39.41 kcal Atomic # 8 Polarization: -13.49 SS G_CDS: -1.76 Total: -15.25 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -30.00 -8.52 -38.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596330155.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.256 kcal (2) G-P(sol) polarization free energy of solvation -29.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds