Wall clock time and date at job start Tue Mar 31 2020 19:25:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45192 * 1 3 3 C 1.34760 * 117.00183 * 2 1 4 4 O 1.21512 * 119.99358 * 359.97438 * 3 2 1 5 5 C 1.47399 * 120.00419 * 180.27441 * 3 2 1 6 6 C 1.39661 * 120.48061 * 359.72617 * 5 3 2 7 7 N 1.31633 * 120.50990 * 180.02562 * 6 5 3 8 8 C 1.32642 * 121.64265 * 359.97438 * 7 6 5 9 9 N 1.38429 * 119.53389 * 179.97438 * 8 7 6 10 10 C 1.46846 * 110.99787 * 63.88462 * 9 8 7 11 11 C 1.53044 * 109.52389 * 174.16260 * 10 9 8 12 12 C 1.53119 * 109.27508 * 59.17624 * 11 10 9 13 13 C 1.53117 * 109.16200 * 302.34428 * 12 11 10 14 14 H 1.08997 * 109.50895 * 297.71527 * 13 12 11 15 15 C 1.50704 * 109.50103 * 177.63530 * 13 12 11 16 16 H 1.08004 * 120.00214 * 240.00094 * 15 13 12 17 17 C 1.37875 * 120.00013 * 60.00624 * 15 13 12 18 18 N 1.31519 * 120.00139 * 359.97438 * 17 15 13 19 19 Si 1.86801 * 120.00412 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.46689 * 359.97438 * 19 17 15 21 21 H 1.48496 * 109.47211 * 119.99748 * 19 17 15 22 22 H 1.48504 * 109.47127 * 239.99952 * 19 17 15 23 23 C 1.46846 * 110.99990 * 299.67600 * 9 8 7 24 24 C 1.39376 * 120.93213 * 359.97438 * 8 7 6 25 25 N 1.48020 * 120.30271 * 180.02562 * 24 8 7 26 26 O 1.21799 * 119.99993 * 179.46600 * 25 24 8 27 27 O 1.21803 * 120.00436 * 359.45291 * 25 24 8 28 28 C 1.36871 * 119.38814 * 359.75801 * 24 8 7 29 29 H 1.09007 * 109.46946 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47310 * 299.99522 * 1 2 3 31 31 H 1.09000 * 109.47435 * 60.00249 * 1 2 3 32 32 H 1.07999 * 119.74700 * 0.02562 * 6 5 3 33 33 H 1.09004 * 109.46370 * 294.17646 * 10 9 8 34 34 H 1.08995 * 109.46459 * 54.14417 * 10 9 8 35 35 H 1.08995 * 109.50231 * 179.11720 * 11 10 9 36 36 H 1.09002 * 109.50044 * 299.24088 * 11 10 9 37 37 H 1.08996 * 109.52509 * 62.25656 * 12 11 10 38 38 H 1.09005 * 109.51904 * 182.44161 * 12 11 10 39 39 H 0.96996 * 120.00513 * 180.02562 * 18 17 15 40 40 H 1.09007 * 109.46048 * 305.85067 * 23 9 8 41 41 H 1.08993 * 109.46747 * 65.81881 * 23 9 8 42 42 H 1.08008 * 120.75239 * 180.28130 * 28 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0638 1.2007 0.0000 4 8 1.4019 2.2197 -0.0005 5 6 3.5357 1.2779 -0.0061 6 6 4.3062 0.1131 -0.0062 7 7 5.6208 0.1814 -0.0111 8 6 6.2571 1.3452 -0.0167 9 7 7.6412 1.3660 -0.0212 10 6 8.1725 0.7669 -1.2521 11 6 9.6929 0.9376 -1.2892 12 6 10.3079 0.2588 -0.0622 13 6 9.7021 0.8677 1.2054 14 1 9.9496 1.9281 1.2540 15 6 10.2591 0.1652 2.4168 16 1 9.5950 -0.3482 3.0963 17 6 11.6166 0.1780 2.6576 18 7 12.4255 0.8028 1.8300 19 14 12.3071 -0.6922 4.1595 20 1 11.1969 -1.3138 4.9253 21 1 13.2608 -1.7449 3.7268 22 1 13.0122 0.2909 5.0207 23 6 8.1815 0.6989 1.1702 24 6 5.5518 2.5473 -0.0180 25 7 6.2762 3.8381 -0.0248 26 8 5.6543 4.8854 -0.0358 27 8 7.4941 3.8532 -0.0192 28 6 4.1833 2.5232 -0.0186 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 3.8198 -0.8512 -0.0021 33 1 7.9256 -0.2946 -1.2753 34 1 7.7303 1.2614 -2.1170 35 1 10.0886 0.4790 -2.1953 36 1 9.9402 1.9992 -1.2799 37 1 10.0938 -0.8095 -0.0913 38 1 11.3866 0.4152 -0.0618 39 1 13.3806 0.8115 1.9992 40 1 7.7458 1.1442 2.0647 41 1 7.9346 -0.3621 1.1357 42 1 3.6148 3.4415 -0.0242 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596330155.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:25:27 Heat of formation + Delta-G solvation = -43.040128 kcal Electronic energy + Delta-G solvation = -29341.764299 eV Core-core repulsion = 25097.611111 eV Total energy + Delta-G solvation = -4244.153189 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.136 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -43.44520 -42.23626 -41.34077 -39.59761 -37.73857 -37.53794 -35.88667 -34.60849 -34.04785 -32.05214 -31.78174 -28.83683 -27.84753 -27.00020 -26.36435 -24.73393 -23.98254 -23.29368 -22.50832 -20.64259 -20.47938 -19.82116 -19.03130 -18.86364 -18.60166 -18.14675 -17.77047 -17.58854 -17.52124 -16.65733 -16.18352 -15.77734 -15.28848 -15.15594 -14.91198 -14.77527 -14.45824 -14.37484 -14.26625 -14.01881 -13.45965 -13.13981 -12.86604 -12.71283 -12.70095 -12.56525 -12.44531 -12.15913 -12.09499 -11.99231 -11.90548 -11.90069 -11.75432 -11.51571 -11.39989 -11.01947 -10.88010 -10.65275 -10.37772 -9.73398 -8.06196 -6.20279 -1.54154 -1.07351 0.06885 0.19213 1.01644 1.34457 1.42232 1.44467 1.54836 2.00480 2.05590 2.46105 2.79174 2.96781 3.15018 3.21514 3.30748 3.33869 3.85554 4.03255 4.14268 4.23789 4.29258 4.32765 4.36134 4.48919 4.52568 4.60388 4.75610 4.80797 4.85782 5.01029 5.06885 5.08550 5.18003 5.31930 5.48411 5.65440 5.70361 5.95889 6.01501 6.07745 6.18533 6.38265 6.39385 6.52275 6.90612 7.47382 8.98765 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.015232 B = 0.003181 C = 0.002929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1837.757071 B = 8798.813098 C = 9557.093843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.345 6.345 3 C 0.531 3.469 4 O -0.519 6.519 5 C -0.184 4.184 6 C 0.235 3.765 7 N -0.513 5.513 8 C 0.405 3.595 9 N -0.500 5.500 10 C 0.078 3.922 11 C -0.107 4.107 12 C -0.103 4.103 13 C 0.057 3.943 14 H 0.002 0.998 15 C -0.535 4.535 16 H 0.051 0.949 17 C 0.018 3.982 18 N -0.911 5.911 19 Si 0.953 3.047 20 H -0.268 1.268 21 H -0.279 1.279 22 H -0.283 1.283 23 C 0.097 3.903 24 C -0.099 4.099 25 N 0.033 4.967 26 O -0.180 6.180 27 O -0.128 6.128 28 C 0.060 3.940 29 H 0.139 0.861 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.229 0.771 33 H 0.055 0.945 34 H 0.078 0.922 35 H 0.081 0.919 36 H 0.055 0.945 37 H 0.031 0.969 38 H 0.063 0.937 39 H 0.261 0.739 40 H 0.046 0.954 41 H 0.045 0.955 42 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.215 -4.439 -7.288 24.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.261 6.261 3 C 0.375 3.625 4 O -0.409 6.409 5 C -0.188 4.188 6 C 0.076 3.924 7 N -0.226 5.226 8 C 0.176 3.824 9 N -0.224 5.224 10 C -0.047 4.047 11 C -0.145 4.145 12 C -0.141 4.141 13 C 0.038 3.962 14 H 0.020 0.980 15 C -0.574 4.574 16 H 0.069 0.931 17 C -0.182 4.182 18 N -0.550 5.550 19 Si 0.779 3.221 20 H -0.192 1.192 21 H -0.204 1.204 22 H -0.210 1.210 23 C -0.028 4.028 24 C -0.187 4.187 25 N 0.552 4.448 26 O -0.389 6.389 27 O -0.350 6.350 28 C 0.034 3.966 29 H 0.157 0.843 30 H 0.085 0.915 31 H 0.087 0.913 32 H 0.246 0.754 33 H 0.073 0.927 34 H 0.097 0.903 35 H 0.100 0.900 36 H 0.074 0.926 37 H 0.050 0.950 38 H 0.082 0.918 39 H 0.070 0.930 40 H 0.064 0.936 41 H 0.063 0.937 42 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -22.989 -4.991 -7.305 24.632 hybrid contribution 0.138 0.398 0.944 1.033 sum -22.851 -4.593 -6.361 24.161 Atomic orbital electron populations 1.23716 0.73118 1.06422 1.03080 1.86514 1.25975 1.30144 1.83468 1.20227 0.87354 0.82351 0.72576 1.90909 1.66715 1.36871 1.46377 1.20000 0.92258 0.93618 1.12971 1.24247 0.87276 1.00178 0.80708 1.68698 1.12070 1.25700 1.16115 1.20281 0.92387 0.86660 0.83098 1.60302 0.98955 1.57184 1.05929 1.22089 0.96432 0.97558 0.88599 1.21579 0.92943 1.01163 0.98831 1.21469 1.01746 0.96954 0.93949 1.18561 0.88280 0.95408 0.93903 0.97958 1.21445 0.92635 1.34116 1.09197 0.93060 1.25662 0.97440 0.96020 0.99047 1.70031 1.03737 1.43551 1.37723 0.85585 0.78361 0.78347 0.79802 1.19243 1.20426 1.20954 1.22041 0.97554 0.95301 0.87946 1.21609 0.93052 0.84336 1.19657 1.43386 1.01553 1.01938 0.97878 1.94481 1.69107 1.20854 1.54481 1.94760 0.94446 1.94079 1.51693 1.21351 0.90368 1.01168 0.83733 0.84308 0.91531 0.91335 0.75447 0.92671 0.90342 0.90008 0.92608 0.94998 0.91801 0.92982 0.93589 0.93714 0.79637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 10.56 113.37 1.20 1.39 16 2 O -0.35 -4.05 9.83 -56.70 -0.56 -4.61 16 3 C 0.53 8.88 7.89 70.23 0.55 9.44 16 4 O -0.52 -11.41 16.20 19.80 0.32 -11.09 16 5 C -0.18 -3.27 5.89 -20.00 -0.12 -3.38 16 6 C 0.24 3.91 10.79 85.07 0.92 4.83 16 7 N -0.51 -12.82 9.69 -192.28 -1.86 -14.69 16 8 C 0.41 12.31 5.27 133.24 0.70 13.01 16 9 N -0.50 -18.12 2.49 -702.11 -1.75 -19.87 16 10 C 0.08 2.56 5.27 86.33 0.46 3.01 16 11 C -0.11 -3.97 6.09 30.65 0.19 -3.78 16 12 C -0.10 -4.75 5.02 30.67 0.15 -4.60 16 13 C 0.06 2.88 2.26 -11.49 -0.03 2.85 16 14 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 15 C -0.54 -29.29 8.57 25.60 0.22 -29.07 16 16 H 0.05 2.76 7.75 -2.91 -0.02 2.73 16 17 C 0.02 0.97 5.30 84.65 0.45 1.42 16 18 N -0.91 -52.37 11.35 21.45 0.24 -52.13 16 19 Si 0.95 43.38 29.54 68.60 2.03 45.41 16 20 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 21 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 22 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 23 C 0.10 4.06 4.46 86.33 0.38 4.44 16 24 C -0.10 -2.84 6.85 36.33 0.25 -2.60 16 25 N 0.03 1.14 4.45 -46.57 -0.21 0.93 16 26 O -0.18 -6.01 18.49 18.89 0.35 -5.66 16 27 O -0.13 -5.14 17.12 18.88 0.32 -4.81 16 28 C 0.06 1.32 9.15 22.47 0.21 1.53 16 29 H 0.14 0.06 8.14 -2.38 -0.02 0.04 16 30 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 32 H 0.23 1.89 7.61 -2.91 -0.02 1.87 16 33 H 0.06 1.72 8.04 -2.38 -0.02 1.70 16 34 H 0.08 2.25 8.10 -2.39 -0.02 2.23 16 35 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 36 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 37 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 38 H 0.06 3.36 6.15 -2.38 -0.01 3.35 16 39 H 0.26 14.25 8.31 -92.71 -0.77 13.48 16 40 H 0.05 1.99 8.10 -2.38 -0.02 1.97 16 41 H 0.04 1.84 7.99 -2.39 -0.02 1.82 16 42 H 0.19 3.78 7.32 -2.91 -0.02 3.76 16 Total: -1.00 -68.21 360.21 5.48 -62.73 By element: Atomic # 1 Polarization: 4.24 SS G_CDS: 1.06 Total: 5.30 kcal Atomic # 6 Polarization: -7.04 SS G_CDS: 5.53 Total: -1.51 kcal Atomic # 7 Polarization: -82.18 SS G_CDS: -3.57 Total: -85.75 kcal Atomic # 8 Polarization: -26.61 SS G_CDS: 0.44 Total: -26.18 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.41 kcal Total: -68.21 5.48 -62.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596330155.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.689 kcal (2) G-P(sol) polarization free energy of solvation -68.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds