Wall clock time and date at job start Tue Mar 31 2020 19:18:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42903 * 113.99696 * 2 1 4 4 C 1.53003 * 109.46379 * 179.97438 * 3 2 1 5 5 N 1.46496 * 109.47319 * 65.00090 * 4 3 2 6 6 C 1.37102 * 119.99909 * 84.61517 * 5 4 3 7 7 H 1.07996 * 120.00591 * 305.50931 * 6 5 4 8 8 C 1.38957 * 119.99566 * 125.78852 * 6 5 4 9 9 N 1.31408 * 120.00080 * 338.73967 * 8 6 5 10 10 Si 1.86795 * 119.99884 * 158.74247 * 8 6 5 11 11 H 1.48502 * 109.47348 * 59.99484 * 10 8 6 12 12 H 1.48497 * 109.47390 * 179.97438 * 10 8 6 13 13 H 1.48500 * 109.46936 * 299.99754 * 10 8 6 14 14 C 1.34775 * 120.00000 * 264.61416 * 5 4 3 15 15 O 1.21291 * 119.99790 * 355.12525 * 14 5 4 16 16 C 1.50694 * 120.00276 * 175.12110 * 14 5 4 17 17 H 1.09006 * 109.49515 * 50.04862 * 16 14 5 18 18 C 1.53042 * 109.49959 * 289.98632 * 16 14 5 19 19 C 1.53035 * 109.54139 * 178.68302 * 18 16 14 20 20 C 1.53192 * 109.31574 * 61.36267 * 19 18 16 21 21 N 1.46928 * 108.77509 * 305.36850 * 20 19 18 22 22 S 1.65602 * 120.63008 * 233.60873 * 21 20 19 23 23 N 1.65604 * 107.21667 * 90.00146 * 22 21 20 24 24 O 1.42099 * 106.39833 * 203.53545 * 22 21 20 25 25 O 1.42092 * 106.40317 * 336.45902 * 22 21 20 26 26 C 1.46933 * 118.76525 * 53.58201 * 21 20 19 27 27 H 1.09004 * 109.47150 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47508 * 299.99947 * 1 2 3 29 29 H 1.08998 * 109.46925 * 60.00747 * 1 2 3 30 30 H 1.09000 * 109.47189 * 59.99964 * 3 2 1 31 31 H 1.08994 * 109.47135 * 299.99461 * 3 2 1 32 32 H 1.09002 * 109.47559 * 304.99359 * 4 3 2 33 33 H 1.09008 * 109.46308 * 184.99832 * 4 3 2 34 34 H 0.96994 * 120.00414 * 180.02562 * 9 8 6 35 35 H 1.08997 * 109.45982 * 298.70291 * 18 16 14 36 36 H 1.08999 * 109.45727 * 58.65939 * 18 16 14 37 37 H 1.09001 * 109.50313 * 181.31854 * 19 18 16 38 38 H 1.09009 * 109.49909 * 301.41107 * 19 18 16 39 39 H 1.08998 * 109.58547 * 65.14822 * 20 19 18 40 40 H 1.08993 * 109.58757 * 185.43819 * 20 19 18 41 41 H 0.96998 * 119.99580 * 150.00444 * 23 22 21 42 42 H 0.96998 * 120.00002 * 329.99208 * 23 22 21 43 43 H 1.08997 * 109.61556 * 186.64390 * 26 21 20 44 44 H 1.09001 * 109.56195 * 66.21454 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 0.0006 5 7 3.9767 0.5639 -1.2508 6 6 4.1620 1.3340 -2.3699 7 1 3.3628 1.9648 -2.7299 8 6 5.3765 1.2986 -3.0442 9 7 6.4601 0.8870 -2.4250 10 14 5.4689 1.8362 -4.8307 11 1 5.0364 3.2523 -4.9446 12 1 6.8664 1.7054 -5.3154 13 1 4.5772 0.9787 -5.6523 14 6 4.2003 -0.7642 -1.3021 15 8 4.1224 -1.4317 -0.2924 16 6 4.5472 -1.4198 -2.6139 17 1 5.3573 -0.8696 -3.0926 18 6 3.3189 -1.4173 -3.5268 19 6 3.6790 -2.0534 -4.8713 20 6 4.1106 -3.5058 -4.6453 21 7 5.1974 -3.5279 -3.6569 22 16 6.6305 -4.2854 -3.9954 23 7 7.6262 -3.1613 -4.6937 24 8 7.2150 -4.6163 -2.7431 25 8 6.3472 -5.2497 -4.9999 26 6 4.9893 -2.8647 -2.3623 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 1.6885 1.8464 0.8900 31 1 1.6886 1.8464 -0.8900 32 1 3.8508 0.5685 0.8428 33 1 3.9784 2.1766 0.0902 34 1 7.3079 0.8626 -2.8955 35 1 2.5171 -1.9880 -3.0583 36 1 2.9880 -0.3913 -3.6875 37 1 2.8103 -2.0301 -5.5292 38 1 4.4976 -1.4977 -5.3291 39 1 3.2655 -4.0842 -4.2721 40 1 4.4597 -3.9336 -5.5850 41 1 8.5872 -3.2272 -4.5796 42 1 7.2483 -2.4372 -5.2169 43 1 5.9203 -2.8686 -1.7954 44 1 4.2162 -3.3912 -1.8027 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597755131.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:18:23 Heat of formation + Delta-G solvation = -152.378073 kcal Electronic energy + Delta-G solvation = -29878.136776 eV Core-core repulsion = 25764.686290 eV Total energy + Delta-G solvation = -4113.450486 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.139 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -39.25569 -37.59531 -36.99595 -36.73932 -35.61307 -34.61396 -32.95308 -32.42109 -31.81602 -30.58616 -28.93332 -25.91205 -24.91020 -24.11780 -23.66479 -21.64161 -20.47472 -19.34182 -18.82599 -17.97766 -17.29782 -16.75719 -16.28373 -15.95130 -15.71946 -15.42675 -15.13028 -14.81926 -14.53074 -14.29109 -14.16215 -13.75174 -13.64082 -13.39663 -12.97996 -12.51233 -12.26617 -12.01639 -11.97554 -11.90301 -11.84088 -11.61865 -11.58252 -11.30765 -11.24274 -11.17404 -10.99006 -10.79414 -10.62481 -10.46263 -10.41722 -10.30527 -10.19465 -9.86102 -9.15219 -8.93374 -8.61557 -8.17814 -7.30213 -6.48567 -4.29403 0.84031 3.00443 3.08975 3.10686 3.11184 3.77643 3.96246 4.14411 4.38653 4.67577 4.78663 4.85227 5.00241 5.27623 5.41742 5.54363 5.60126 5.63007 5.74525 5.83505 5.84050 5.90700 5.94458 5.99148 6.08136 6.13919 6.18843 6.30947 6.37837 6.41319 6.49667 6.62694 6.72177 6.80594 6.94713 6.99971 7.15254 7.24353 7.34071 7.72458 7.94387 8.60962 8.87347 9.59269 10.05920 10.54930 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.012539 B = 0.005365 C = 0.004541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2232.543466 B = 5217.999256 C = 6164.748545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.370 6.370 3 C 0.051 3.949 4 C 0.113 3.887 5 N -0.452 5.452 6 C -0.342 4.342 7 H 0.077 0.923 8 C 0.056 3.944 9 N -0.850 5.850 10 Si 0.891 3.109 11 H -0.271 1.271 12 H -0.282 1.282 13 H -0.263 1.263 14 C 0.534 3.466 15 O -0.595 6.595 16 C -0.110 4.110 17 H 0.116 0.884 18 C -0.101 4.101 19 C -0.134 4.134 20 C 0.119 3.881 21 N -0.999 5.999 22 S 2.794 3.206 23 N -1.260 6.260 24 O -0.981 6.981 25 O -0.991 6.991 26 C 0.141 3.859 27 H 0.077 0.923 28 H 0.031 0.969 29 H 0.033 0.967 30 H 0.039 0.961 31 H 0.047 0.953 32 H 0.072 0.928 33 H 0.078 0.922 34 H 0.271 0.729 35 H 0.055 0.945 36 H 0.086 0.914 37 H 0.071 0.929 38 H 0.063 0.937 39 H 0.073 0.927 40 H 0.084 0.916 41 H 0.416 0.584 42 H 0.414 0.586 43 H 0.089 0.911 44 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.484 -1.350 -5.624 7.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.288 6.288 3 C -0.027 4.027 4 C -0.011 4.011 5 N -0.172 5.172 6 C -0.470 4.470 7 H 0.094 0.906 8 C -0.152 4.152 9 N -0.485 5.485 10 Si 0.717 3.283 11 H -0.196 1.196 12 H -0.208 1.208 13 H -0.188 1.188 14 C 0.322 3.678 15 O -0.479 6.479 16 C -0.132 4.132 17 H 0.133 0.867 18 C -0.138 4.138 19 C -0.173 4.173 20 C -0.007 4.007 21 N -0.841 5.841 22 S 2.799 3.201 23 N -0.933 5.933 24 O -0.964 6.964 25 O -0.974 6.974 26 C 0.017 3.983 27 H 0.096 0.904 28 H 0.049 0.951 29 H 0.052 0.948 30 H 0.057 0.943 31 H 0.065 0.935 32 H 0.091 0.909 33 H 0.096 0.904 34 H 0.082 0.918 35 H 0.074 0.926 36 H 0.104 0.896 37 H 0.090 0.910 38 H 0.082 0.918 39 H 0.091 0.909 40 H 0.102 0.898 41 H 0.245 0.755 42 H 0.241 0.759 43 H 0.108 0.892 44 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -4.087 -2.952 -4.856 7.000 hybrid contribution 0.172 1.610 -1.223 2.029 sum -3.915 -1.342 -6.079 7.354 Atomic orbital electron populations 1.22635 0.82996 1.01861 0.98929 1.88113 1.17796 1.27783 1.95088 1.23030 0.96257 0.84529 0.98844 1.21373 0.90315 0.98773 0.90644 1.43011 1.61458 1.04635 1.08115 1.19022 0.97727 1.26995 1.03290 0.90553 1.25538 0.94737 0.95458 0.99421 1.70045 0.98816 1.43727 1.35916 0.86586 0.77746 0.79994 0.84001 1.19636 1.20754 1.18793 1.19909 0.76808 0.82166 0.88878 1.90522 1.56401 1.63932 1.37028 1.21538 1.00692 0.94665 0.96346 0.86653 1.21331 0.96791 1.02287 0.93437 1.21978 1.01442 0.95218 0.98682 1.21483 0.90380 0.97747 0.91043 1.57807 1.29391 1.72527 1.24378 1.01557 0.72141 0.73114 0.73280 1.53590 1.20683 1.47860 1.71156 1.93624 1.76929 1.82848 1.43012 1.93598 1.84562 1.58212 1.61012 1.21331 1.03141 0.92607 0.81266 0.90412 0.95061 0.94816 0.94275 0.93499 0.90918 0.90426 0.91849 0.92615 0.89575 0.91007 0.91845 0.90891 0.89762 0.75483 0.75946 0.89236 0.90459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 11.01 101.05 1.11 1.59 16 2 O -0.37 -7.21 10.41 -35.23 -0.37 -7.58 16 3 C 0.05 0.92 6.25 37.16 0.23 1.16 16 4 C 0.11 2.39 5.88 -4.04 -0.02 2.36 16 5 N -0.45 -10.59 2.37 -114.81 -0.27 -10.86 16 6 C -0.34 -7.88 7.14 -14.93 -0.11 -7.99 16 7 H 0.08 1.72 7.91 -52.49 -0.42 1.30 16 8 C 0.06 1.27 3.28 -17.47 -0.06 1.22 16 9 N -0.85 -20.82 12.06 55.50 0.67 -20.15 16 10 Si 0.89 17.30 29.60 -169.99 -5.03 12.26 16 11 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 12 H -0.28 -5.49 7.11 56.52 0.40 -5.09 16 13 H -0.26 -4.81 7.11 56.52 0.40 -4.41 16 14 C 0.53 12.94 6.12 -10.99 -0.07 12.87 16 15 O -0.60 -15.91 15.36 5.55 0.09 -15.83 16 16 C -0.11 -2.28 1.84 -91.66 -0.17 -2.45 16 17 H 0.12 2.53 4.73 -51.93 -0.25 2.28 16 18 C -0.10 -1.80 5.04 -26.69 -0.13 -1.93 16 19 C -0.13 -1.92 6.08 -26.61 -0.16 -2.08 16 20 C 0.12 1.64 6.37 -3.71 -0.02 1.62 16 21 N -1.00 -16.16 3.35 -113.52 -0.38 -16.54 16 22 S 2.79 44.39 6.70 -107.50 -0.72 43.67 16 23 N -1.26 -15.84 9.58 60.35 0.58 -15.26 16 24 O -0.98 -18.97 16.85 -57.17 -0.96 -19.94 16 25 O -0.99 -17.19 16.86 -57.17 -0.96 -18.16 16 26 C 0.14 2.76 5.11 -3.71 -0.02 2.75 16 27 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 32 H 0.07 1.65 7.21 -51.93 -0.37 1.28 16 33 H 0.08 1.55 8.08 -51.92 -0.42 1.13 16 34 H 0.27 6.30 8.31 -40.82 -0.34 5.96 16 35 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 36 H 0.09 1.64 6.57 -51.93 -0.34 1.30 16 37 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.06 0.91 8.14 -51.92 -0.42 0.49 16 39 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 40 H 0.08 1.03 7.13 -51.93 -0.37 0.66 16 41 H 0.42 4.44 8.96 -34.47 -0.31 4.13 16 42 H 0.41 4.64 8.96 -34.47 -0.31 4.33 16 43 H 0.09 1.90 7.13 -51.93 -0.37 1.53 16 44 H 0.08 1.55 7.82 -51.93 -0.41 1.14 16 LS Contribution 364.68 15.07 5.50 5.50 Total: -1.00 -32.24 364.68 -7.79 -40.03 By element: Atomic # 1 Polarization: 20.26 SS G_CDS: -6.50 Total: 13.76 kcal Atomic # 6 Polarization: 8.52 SS G_CDS: 0.58 Total: 9.10 kcal Atomic # 7 Polarization: -63.41 SS G_CDS: 0.60 Total: -62.81 kcal Atomic # 8 Polarization: -59.30 SS G_CDS: -2.21 Total: -61.50 kcal Atomic # 14 Polarization: 17.30 SS G_CDS: -5.03 Total: 12.26 kcal Atomic # 16 Polarization: 44.39 SS G_CDS: -0.72 Total: 43.67 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.24 -7.79 -40.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597755131.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.348 kcal (2) G-P(sol) polarization free energy of solvation -32.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds