Wall clock time and date at job start Tue Mar 31 2020 19:18:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42903 * 113.99696 * 2 1 4 4 C 1.53003 * 109.46379 * 179.97438 * 3 2 1 5 5 N 1.46496 * 109.47319 * 65.00090 * 4 3 2 6 6 C 1.37102 * 119.99909 * 84.61517 * 5 4 3 7 7 H 1.07996 * 120.00591 * 305.50931 * 6 5 4 8 8 C 1.38957 * 119.99566 * 125.78852 * 6 5 4 9 9 N 1.31408 * 120.00080 * 338.73967 * 8 6 5 10 10 Si 1.86795 * 119.99884 * 158.74247 * 8 6 5 11 11 H 1.48502 * 109.47348 * 59.99484 * 10 8 6 12 12 H 1.48497 * 109.47390 * 179.97438 * 10 8 6 13 13 H 1.48500 * 109.46936 * 299.99754 * 10 8 6 14 14 C 1.34775 * 120.00000 * 264.61416 * 5 4 3 15 15 O 1.21291 * 119.99790 * 355.12525 * 14 5 4 16 16 C 1.50694 * 120.00276 * 175.12110 * 14 5 4 17 17 H 1.09006 * 109.49515 * 50.04862 * 16 14 5 18 18 C 1.53042 * 109.49959 * 289.98632 * 16 14 5 19 19 C 1.53035 * 109.54139 * 178.68302 * 18 16 14 20 20 C 1.53192 * 109.31574 * 61.36267 * 19 18 16 21 21 N 1.46928 * 108.77509 * 305.36850 * 20 19 18 22 22 S 1.65602 * 120.63008 * 233.60873 * 21 20 19 23 23 N 1.65604 * 107.21667 * 90.00146 * 22 21 20 24 24 O 1.42099 * 106.39833 * 203.53545 * 22 21 20 25 25 O 1.42092 * 106.40317 * 336.45902 * 22 21 20 26 26 C 1.46933 * 118.76525 * 53.58201 * 21 20 19 27 27 H 1.09004 * 109.47150 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47508 * 299.99947 * 1 2 3 29 29 H 1.08998 * 109.46925 * 60.00747 * 1 2 3 30 30 H 1.09000 * 109.47189 * 59.99964 * 3 2 1 31 31 H 1.08994 * 109.47135 * 299.99461 * 3 2 1 32 32 H 1.09002 * 109.47559 * 304.99359 * 4 3 2 33 33 H 1.09008 * 109.46308 * 184.99832 * 4 3 2 34 34 H 0.96994 * 120.00414 * 180.02562 * 9 8 6 35 35 H 1.08997 * 109.45982 * 298.70291 * 18 16 14 36 36 H 1.08999 * 109.45727 * 58.65939 * 18 16 14 37 37 H 1.09001 * 109.50313 * 181.31854 * 19 18 16 38 38 H 1.09009 * 109.49909 * 301.41107 * 19 18 16 39 39 H 1.08998 * 109.58547 * 65.14822 * 20 19 18 40 40 H 1.08993 * 109.58757 * 185.43819 * 20 19 18 41 41 H 0.96998 * 119.99580 * 150.00444 * 23 22 21 42 42 H 0.96998 * 120.00002 * 329.99208 * 23 22 21 43 43 H 1.08997 * 109.61556 * 186.64390 * 26 21 20 44 44 H 1.09001 * 109.56195 * 66.21454 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 0.0006 5 7 3.9767 0.5639 -1.2508 6 6 4.1620 1.3340 -2.3699 7 1 3.3628 1.9648 -2.7299 8 6 5.3765 1.2986 -3.0442 9 7 6.4601 0.8870 -2.4250 10 14 5.4689 1.8362 -4.8307 11 1 5.0364 3.2523 -4.9446 12 1 6.8664 1.7054 -5.3154 13 1 4.5772 0.9787 -5.6523 14 6 4.2003 -0.7642 -1.3021 15 8 4.1224 -1.4317 -0.2924 16 6 4.5472 -1.4198 -2.6139 17 1 5.3573 -0.8696 -3.0926 18 6 3.3189 -1.4173 -3.5268 19 6 3.6790 -2.0534 -4.8713 20 6 4.1106 -3.5058 -4.6453 21 7 5.1974 -3.5279 -3.6569 22 16 6.6305 -4.2854 -3.9954 23 7 7.6262 -3.1613 -4.6937 24 8 7.2150 -4.6163 -2.7431 25 8 6.3472 -5.2497 -4.9999 26 6 4.9893 -2.8647 -2.3623 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 1.6885 1.8464 0.8900 31 1 1.6886 1.8464 -0.8900 32 1 3.8508 0.5685 0.8428 33 1 3.9784 2.1766 0.0902 34 1 7.3079 0.8626 -2.8955 35 1 2.5171 -1.9880 -3.0583 36 1 2.9880 -0.3913 -3.6875 37 1 2.8103 -2.0301 -5.5292 38 1 4.4976 -1.4977 -5.3291 39 1 3.2655 -4.0842 -4.2721 40 1 4.4597 -3.9336 -5.5850 41 1 8.5872 -3.2272 -4.5796 42 1 7.2483 -2.4372 -5.2169 43 1 5.9203 -2.8686 -1.7954 44 1 4.2162 -3.3912 -1.8027 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597755131.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:18:22 Heat of formation + Delta-G solvation = -178.778094 kcal Electronic energy + Delta-G solvation = -29879.281567 eV Core-core repulsion = 25764.686290 eV Total energy + Delta-G solvation = -4114.595277 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.139 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -40.92639 -39.01021 -38.38166 -38.21958 -36.99913 -36.44138 -34.07028 -34.03714 -33.28453 -32.03683 -30.48309 -27.19010 -26.66963 -25.46935 -25.14748 -23.11262 -21.91987 -20.96284 -20.18323 -19.33842 -18.57480 -18.32004 -17.62705 -17.43807 -17.19204 -16.90849 -16.62388 -16.27692 -16.10862 -15.76141 -15.46534 -15.30061 -15.08391 -14.72963 -14.46451 -13.99088 -13.77105 -13.44756 -13.34470 -13.32008 -13.24402 -13.14046 -12.98946 -12.93099 -12.84996 -12.65576 -12.46227 -12.21331 -12.08584 -11.89797 -11.85028 -11.69823 -11.43845 -11.23596 -10.60128 -10.50706 -10.09356 -9.94916 -9.11255 -8.24106 -6.12074 -0.44498 1.48712 1.53360 1.61021 1.83710 2.30186 2.40618 2.54412 3.01549 3.06511 3.16767 3.47620 3.65303 4.06917 4.11735 4.27041 4.28381 4.33013 4.42318 4.47565 4.54683 4.60312 4.61164 4.66413 4.76586 4.83659 4.86043 4.88471 4.94515 5.09781 5.12126 5.19920 5.27562 5.34295 5.51483 5.54079 5.57805 5.62008 6.15734 6.29545 6.43149 6.80592 7.10226 7.76599 8.25908 8.80483 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.012539 B = 0.005365 C = 0.004541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2232.543466 B = 5217.999256 C = 6164.748545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.408 6.408 3 C 0.062 3.938 4 C 0.104 3.896 5 N -0.456 5.456 6 C -0.354 4.354 7 H 0.082 0.918 8 C 0.026 3.974 9 N -0.887 5.887 10 Si 0.947 3.053 11 H -0.273 1.273 12 H -0.282 1.282 13 H -0.238 1.238 14 C 0.516 3.484 15 O -0.635 6.635 16 C -0.105 4.105 17 H 0.107 0.893 18 C -0.095 4.095 19 C -0.129 4.129 20 C 0.111 3.889 21 N -0.998 5.998 22 S 2.813 3.187 23 N -1.248 6.248 24 O -1.019 7.019 25 O -1.001 7.001 26 C 0.154 3.846 27 H 0.086 0.914 28 H 0.052 0.948 29 H 0.046 0.954 30 H 0.069 0.931 31 H 0.052 0.948 32 H 0.046 0.954 33 H 0.083 0.917 34 H 0.273 0.727 35 H 0.051 0.949 36 H 0.075 0.925 37 H 0.105 0.895 38 H 0.067 0.933 39 H 0.084 0.916 40 H 0.109 0.891 41 H 0.427 0.573 42 H 0.424 0.576 43 H 0.064 0.936 44 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.657 -0.831 -8.291 10.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.328 6.328 3 C -0.015 4.015 4 C -0.020 4.020 5 N -0.176 5.176 6 C -0.481 4.481 7 H 0.100 0.900 8 C -0.178 4.178 9 N -0.522 5.522 10 Si 0.770 3.230 11 H -0.198 1.198 12 H -0.208 1.208 13 H -0.162 1.162 14 C 0.306 3.694 15 O -0.522 6.522 16 C -0.128 4.128 17 H 0.125 0.875 18 C -0.133 4.133 19 C -0.167 4.167 20 C -0.013 4.013 21 N -0.839 5.839 22 S 2.818 3.182 23 N -0.925 5.925 24 O -1.003 7.003 25 O -0.984 6.984 26 C 0.027 3.973 27 H 0.104 0.896 28 H 0.070 0.930 29 H 0.064 0.936 30 H 0.087 0.913 31 H 0.070 0.930 32 H 0.065 0.935 33 H 0.101 0.899 34 H 0.082 0.918 35 H 0.070 0.930 36 H 0.093 0.907 37 H 0.124 0.876 38 H 0.086 0.914 39 H 0.102 0.898 40 H 0.127 0.873 41 H 0.258 0.742 42 H 0.253 0.747 43 H 0.082 0.918 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -5.287 -2.410 -7.546 9.524 hybrid contribution 0.524 1.506 -0.315 1.626 sum -4.763 -0.903 -7.862 9.237 Atomic orbital electron populations 1.22840 0.80386 1.03023 1.00522 1.88058 1.20751 1.28544 1.95419 1.22860 0.93698 0.84532 1.00427 1.21512 0.93069 0.98189 0.89189 1.43232 1.60776 1.04713 1.08860 1.19256 0.98197 1.27125 1.03518 0.90015 1.26214 0.93893 0.94946 1.02783 1.70152 0.99454 1.44959 1.37636 0.85729 0.78077 0.79756 0.79481 1.19841 1.20758 1.16164 1.20594 0.76604 0.82463 0.89756 1.90479 1.58372 1.64729 1.38587 1.21492 1.01702 0.94518 0.95085 0.87529 1.21284 0.95174 1.02036 0.94841 1.21988 1.03022 0.94916 0.96814 1.21778 0.90162 0.97982 0.91358 1.57699 1.30468 1.72044 1.23711 1.00821 0.71842 0.73099 0.72406 1.53242 1.21018 1.47572 1.70690 1.93577 1.77744 1.83799 1.45137 1.93586 1.84805 1.59012 1.60950 1.20955 1.01394 0.92343 0.82564 0.89594 0.92968 0.93574 0.91313 0.93004 0.93535 0.89893 0.91768 0.92987 0.90670 0.87627 0.91440 0.89758 0.87271 0.74213 0.74738 0.91752 0.91597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.78 11.01 113.37 1.25 2.02 16 2 O -0.41 -15.88 10.41 -148.98 -1.55 -17.43 16 3 C 0.06 2.21 6.25 71.98 0.45 2.66 16 4 C 0.10 4.51 5.88 86.38 0.51 5.02 16 5 N -0.46 -21.81 2.37 -635.53 -1.51 -23.31 16 6 C -0.35 -16.19 7.14 84.04 0.60 -15.59 16 7 H 0.08 3.60 7.91 -2.91 -0.02 3.58 16 8 C 0.03 1.18 3.28 84.93 0.28 1.46 16 9 N -0.89 -43.70 12.06 21.66 0.26 -43.44 16 10 Si 0.95 33.79 29.60 68.60 2.03 35.82 16 11 H -0.27 -9.83 7.11 99.48 0.71 -9.13 16 12 H -0.28 -10.04 7.11 99.48 0.71 -9.33 16 13 H -0.24 -7.53 7.11 99.48 0.71 -6.82 16 14 C 0.52 25.78 6.12 87.66 0.54 26.32 16 15 O -0.63 -35.62 15.36 -3.07 -0.05 -35.66 16 16 C -0.11 -4.41 1.84 -11.46 -0.02 -4.43 16 17 H 0.11 4.66 4.73 -2.38 -0.01 4.65 16 18 C -0.10 -3.28 5.04 30.62 0.15 -3.13 16 19 C -0.13 -3.25 6.08 30.67 0.19 -3.06 16 20 C 0.11 2.76 6.37 86.36 0.55 3.31 16 21 N -1.00 -31.25 3.35 -513.07 -1.72 -32.96 16 22 S 2.81 86.64 6.70 -56.49 -0.38 86.27 16 23 N -1.25 -29.29 9.58 37.02 0.35 -28.94 16 24 O -1.02 -39.84 16.85 -128.00 -2.16 -42.00 16 25 O -1.00 -32.79 16.86 -128.00 -2.16 -34.94 16 26 C 0.15 6.13 5.11 86.36 0.44 6.58 16 27 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 28 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 31 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 32 H 0.05 2.22 7.21 -2.39 -0.02 2.21 16 33 H 0.08 3.39 8.08 -2.38 -0.02 3.37 16 34 H 0.27 12.70 8.31 -92.71 -0.77 11.93 16 35 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 36 H 0.07 2.75 6.57 -2.39 -0.02 2.73 16 37 H 0.11 2.02 8.14 -2.39 -0.02 2.00 16 38 H 0.07 1.67 8.14 -2.38 -0.02 1.65 16 39 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 40 H 0.11 2.23 7.13 -2.39 -0.02 2.21 16 41 H 0.43 8.46 8.96 -96.75 -0.87 7.59 16 42 H 0.42 8.47 8.96 -96.75 -0.87 7.60 16 43 H 0.06 2.86 7.13 -2.39 -0.02 2.85 16 44 H 0.07 2.74 7.82 -2.39 -0.02 2.72 16 Total: -1.00 -71.17 364.68 -2.63 -73.81 By element: Atomic # 1 Polarization: 42.33 SS G_CDS: -0.70 Total: 41.63 kcal Atomic # 6 Polarization: 16.23 SS G_CDS: 4.93 Total: 21.16 kcal Atomic # 7 Polarization: -126.05 SS G_CDS: -2.61 Total: -128.65 kcal Atomic # 8 Polarization: -124.12 SS G_CDS: -5.91 Total: -130.04 kcal Atomic # 14 Polarization: 33.79 SS G_CDS: 2.03 Total: 35.82 kcal Atomic # 16 Polarization: 86.64 SS G_CDS: -0.38 Total: 86.27 kcal Total: -71.17 -2.63 -73.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597755131.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.973 kcal (2) G-P(sol) polarization free energy of solvation -71.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds