Wall clock time and date at job start Tue Mar 31 2020 19:22:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45193 * 1 3 3 C 1.34697 * 116.99770 * 2 1 4 4 O 1.21441 * 119.99451 * 359.97438 * 3 2 1 5 5 C 1.47936 * 120.00144 * 180.02562 * 3 2 1 6 6 C 1.39685 * 119.98239 * 359.97389 * 5 3 2 7 7 C 1.37703 * 120.06709 * 180.02562 * 6 5 3 8 8 C 1.39634 * 120.04343 * 0.02562 * 7 6 5 9 9 C 1.47893 * 120.02261 * 180.02562 * 8 7 6 10 10 O 1.21550 * 120.00262 * 233.86732 * 9 8 7 11 11 N 1.34773 * 120.00061 * 53.86624 * 9 8 7 12 12 C 1.46929 * 120.63083 * 5.51887 * 11 9 8 13 13 C 1.53628 * 108.54402 * 126.36674 * 12 11 9 14 14 C 1.53036 * 109.23895 * 54.86089 * 13 12 11 15 15 C 1.53042 * 109.53748 * 298.50621 * 14 13 12 16 16 H 1.08991 * 109.50187 * 301.41762 * 15 14 13 17 17 C 1.50703 * 109.49785 * 181.31585 * 15 14 13 18 18 H 1.08002 * 120.00123 * 0.16728 * 17 15 14 19 19 C 1.37875 * 120.00031 * 180.16139 * 17 15 14 20 20 N 1.31521 * 120.00021 * 0.02562 * 19 17 15 21 21 Si 1.86802 * 120.00098 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.46569 * 60.00455 * 21 19 17 23 23 H 1.48496 * 109.47302 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.47104 * 300.00617 * 21 19 17 25 25 C 1.46923 * 120.63292 * 185.79781 * 11 9 8 26 26 C 1.39788 * 119.96223 * 0.02562 * 8 7 6 27 27 F 1.35101 * 120.03530 * 180.25286 * 26 8 7 28 28 C 1.38194 * 119.93350 * 359.97438 * 26 8 7 29 29 H 1.09000 * 109.47676 * 60.00544 * 1 2 3 30 30 H 1.09000 * 109.46843 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47571 * 299.99655 * 1 2 3 32 32 H 1.07996 * 119.96295 * 0.02562 * 6 5 3 33 33 H 1.08007 * 119.98024 * 179.97438 * 7 6 5 34 34 H 1.08998 * 109.58933 * 246.20323 * 12 11 9 35 35 H 1.09007 * 109.58333 * 6.62781 * 12 11 9 36 36 H 1.09005 * 109.63558 * 294.86656 * 13 12 11 37 37 H 1.09000 * 109.45509 * 174.74402 * 13 12 11 38 38 H 1.09001 * 109.45896 * 178.49486 * 14 13 12 39 39 H 1.09001 * 109.45139 * 58.52542 * 14 13 12 40 40 H 0.97005 * 119.99685 * 179.97438 * 20 19 17 41 41 H 1.08992 * 109.58790 * 353.37830 * 25 11 9 42 42 H 1.09006 * 109.58270 * 113.80036 * 25 11 9 43 43 H 1.07997 * 120.02086 * 179.97438 * 28 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0634 1.2002 0.0000 4 8 1.4018 2.2186 -0.0005 5 6 3.5407 1.2777 -0.0006 6 6 4.3012 0.1060 -0.0006 7 6 5.6765 0.1761 -0.0006 8 6 6.3131 1.4189 0.0000 9 6 7.7901 1.4937 -0.0006 10 8 8.3661 2.1438 0.8497 11 7 8.4975 0.8410 -0.9440 12 6 7.8156 0.1512 -2.0476 13 6 8.4010 0.6561 -3.3753 14 6 9.9197 0.4687 -3.3604 15 6 10.5261 1.2933 -2.2226 16 1 10.2711 2.3442 -2.3590 17 6 12.0246 1.1337 -2.2289 18 1 12.4980 0.5089 -2.9719 19 6 12.7913 1.7853 -1.2863 20 7 12.2148 2.5458 -0.3813 21 14 14.6488 1.5880 -1.2945 22 1 15.1916 2.0664 -2.5914 23 1 15.2362 2.3846 -0.1875 24 1 14.9953 0.1557 -1.1111 25 6 9.9650 0.8005 -0.8850 26 6 5.5535 2.5924 0.0010 27 9 6.1679 3.7956 -0.0036 28 6 4.1734 2.5206 0.0010 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 3.8101 -0.8558 -0.0006 33 1 6.2631 -0.7307 -0.0001 34 1 7.9742 -0.9236 -1.9604 35 1 6.7482 0.3694 -2.0108 36 1 8.1659 1.7131 -3.5008 37 1 7.9723 0.0875 -4.2006 38 1 10.3359 0.8011 -4.3114 39 1 10.1540 -0.5852 -3.2100 40 1 12.7542 3.0040 0.2821 41 1 10.3164 1.4470 -0.0809 42 1 10.2953 -0.2226 -0.7049 43 1 3.5852 3.4263 0.0023 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597904001.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:22:46 Heat of formation + Delta-G solvation = -136.921576 kcal Electronic energy + Delta-G solvation = -28915.833738 eV Core-core repulsion = 24647.689583 eV Total energy + Delta-G solvation = -4268.144155 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.137 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -48.93823 -40.95382 -39.95144 -38.35004 -36.83186 -36.67597 -33.54242 -32.19715 -31.54581 -31.01671 -29.76798 -28.24001 -25.83717 -25.09876 -24.02257 -23.01056 -21.86216 -21.60670 -20.17806 -18.85695 -18.52942 -17.53402 -17.21864 -16.75923 -16.38903 -16.22505 -16.14918 -15.86686 -15.33443 -14.59517 -14.52327 -14.37341 -14.22377 -13.80843 -13.73759 -13.63220 -13.37048 -12.96413 -12.66486 -12.56053 -12.52452 -12.43921 -12.16372 -11.90947 -11.67217 -11.21520 -11.04544 -10.97320 -10.94566 -10.56049 -10.47562 -10.27163 -9.94487 -9.63215 -9.35334 -9.15979 -9.03495 -8.97279 -8.46137 -7.85903 -6.01169 -4.10765 0.07000 0.83660 2.00872 2.19112 2.95698 3.25943 3.31899 3.37346 3.38299 3.55608 3.97748 4.22076 4.40463 4.41413 4.59911 4.65641 4.72260 4.79700 4.85181 5.09954 5.21646 5.27903 5.30010 5.43077 5.50897 5.61993 5.67371 5.74849 5.81362 5.90868 5.93011 6.11810 6.25835 6.36838 6.55475 6.60759 6.79202 6.92807 7.05671 7.17049 7.30386 7.58876 7.82686 7.94274 8.11448 8.34576 8.64573 8.93240 9.55158 11.03955 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.025030 B = 0.002719 C = 0.002587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.409136 B =10295.111983 C =10820.852215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.352 6.352 3 C 0.512 3.488 4 O -0.500 6.500 5 C -0.092 4.092 6 C -0.077 4.077 7 C -0.076 4.076 8 C -0.110 4.110 9 C 0.543 3.457 10 O -0.513 6.513 11 N -0.594 5.594 12 C 0.104 3.896 13 C -0.134 4.134 14 C -0.111 4.111 15 C 0.040 3.960 16 H 0.030 0.970 17 C -0.522 4.522 18 H 0.058 0.942 19 C 0.063 3.937 20 N -0.880 5.880 21 Si 0.893 3.107 22 H -0.277 1.277 23 H -0.287 1.287 24 H -0.277 1.277 25 C 0.112 3.888 26 C 0.134 3.866 27 F -0.115 7.115 28 C -0.095 4.095 29 H 0.065 0.935 30 H 0.104 0.896 31 H 0.065 0.935 32 H 0.150 0.850 33 H 0.149 0.851 34 H 0.066 0.934 35 H 0.072 0.928 36 H 0.060 0.940 37 H 0.061 0.939 38 H 0.052 0.948 39 H 0.051 0.949 40 H 0.265 0.735 41 H 0.124 0.876 42 H 0.047 0.953 43 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.768 -8.316 -1.002 23.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.268 6.268 3 C 0.357 3.643 4 O -0.388 6.388 5 C -0.093 4.093 6 C -0.096 4.096 7 C -0.094 4.094 8 C -0.115 4.115 9 C 0.328 3.672 10 O -0.389 6.389 11 N -0.326 5.326 12 C -0.020 4.020 13 C -0.172 4.172 14 C -0.149 4.149 15 C 0.021 3.979 16 H 0.048 0.952 17 C -0.561 4.561 18 H 0.077 0.923 19 C -0.140 4.140 20 N -0.517 5.517 21 Si 0.721 3.279 22 H -0.203 1.203 23 H -0.213 1.213 24 H -0.202 1.202 25 C -0.008 4.008 26 C 0.114 3.886 27 F -0.093 7.093 28 C -0.114 4.114 29 H 0.084 0.916 30 H 0.123 0.877 31 H 0.083 0.917 32 H 0.168 0.832 33 H 0.167 0.833 34 H 0.085 0.915 35 H 0.090 0.910 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.071 0.929 39 H 0.069 0.931 40 H 0.075 0.925 41 H 0.142 0.858 42 H 0.065 0.935 43 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -21.587 -7.507 -0.382 22.859 hybrid contribution 0.853 0.197 -0.027 0.876 sum -20.734 -7.310 -0.409 21.989 Atomic orbital electron populations 1.23330 0.75534 1.04009 1.02827 1.86531 1.23857 1.32240 1.84202 1.21071 0.88784 0.81626 0.72833 1.90852 1.66635 1.36045 1.45269 1.18839 0.89291 0.94018 1.07157 1.21404 0.93265 0.98285 0.96597 1.21223 0.94254 0.96621 0.97328 1.20675 0.95865 0.93316 1.01622 1.18038 0.85289 0.80786 0.83120 1.90868 1.70335 1.39765 1.37927 1.48480 1.09511 1.50913 1.23730 1.21893 0.96138 0.96574 0.87383 1.22022 0.98513 1.01161 0.95498 1.21634 0.92188 1.00454 1.00576 1.18966 0.94722 0.95244 0.88979 0.95220 1.21024 0.90644 1.29678 1.14753 0.92349 1.25067 0.98677 0.94821 0.95485 1.69878 1.35506 1.29657 1.16652 0.86643 0.85539 0.78135 0.77607 1.20269 1.21251 1.20241 1.22406 0.72707 1.01076 1.04616 1.17374 0.89678 0.80639 1.00929 1.91623 1.82901 1.41623 1.93134 1.21111 0.92318 0.98752 0.99203 0.91629 0.87721 0.91660 0.83188 0.83332 0.91547 0.91018 0.92095 0.92051 0.92897 0.93072 0.92505 0.85772 0.93496 0.82721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.21 10.56 101.05 1.07 1.27 16 2 O -0.35 -2.99 9.80 -40.48 -0.40 -3.38 16 3 C 0.51 5.44 7.90 34.70 0.27 5.72 16 4 O -0.50 -6.46 16.12 -19.22 -0.31 -6.77 16 5 C -0.09 -0.97 5.87 -104.93 -0.62 -1.59 16 6 C -0.08 -0.70 9.60 -39.24 -0.38 -1.07 16 7 C -0.08 -0.82 7.74 -39.26 -0.30 -1.13 16 8 C -0.11 -1.67 4.62 -104.84 -0.48 -2.15 16 9 C 0.54 10.82 6.88 -12.31 -0.08 10.73 16 10 O -0.51 -12.70 16.26 5.32 0.09 -12.62 16 11 N -0.59 -11.47 2.97 -173.59 -0.51 -11.98 16 12 C 0.10 1.51 5.59 -3.48 -0.02 1.49 16 13 C -0.13 -2.08 6.10 -26.39 -0.16 -2.24 16 14 C -0.11 -2.13 5.10 -26.69 -0.14 -2.26 16 15 C 0.04 0.97 2.25 -91.65 -0.21 0.76 16 16 H 0.03 0.82 8.14 -51.93 -0.42 0.39 16 17 C -0.52 -13.91 8.56 -34.44 -0.29 -14.21 16 18 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 19 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 20 N -0.88 -25.55 11.39 55.43 0.63 -24.92 16 21 Si 0.89 21.08 29.54 -169.99 -5.02 16.06 16 22 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 23 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 24 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 25 C 0.11 2.62 5.41 -3.71 -0.02 2.60 16 26 C 0.13 2.00 7.26 -39.02 -0.28 1.71 16 27 F -0.11 -2.03 16.63 2.25 0.04 -1.99 16 28 C -0.09 -1.15 9.56 -39.14 -0.37 -1.52 16 29 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.10 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 32 H 0.15 0.94 7.60 -52.49 -0.40 0.54 16 33 H 0.15 1.35 7.74 -52.48 -0.41 0.94 16 34 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.07 0.88 5.37 -51.92 -0.28 0.60 16 36 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 37 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 39 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 41 H 0.12 3.45 5.11 -51.93 -0.27 3.18 16 42 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 43 H 0.16 1.73 7.63 -52.49 -0.40 1.33 16 LS Contribution 363.26 15.07 5.47 5.47 Total: -1.00 -33.16 363.26 -7.65 -40.81 By element: Atomic # 1 Polarization: 5.11 SS G_CDS: -5.52 Total: -0.41 kcal Atomic # 6 Polarization: 1.86 SS G_CDS: -2.11 Total: -0.26 kcal Atomic # 7 Polarization: -37.02 SS G_CDS: 0.12 Total: -36.91 kcal Atomic # 8 Polarization: -22.16 SS G_CDS: -0.62 Total: -22.78 kcal Atomic # 9 Polarization: -2.03 SS G_CDS: 0.04 Total: -1.99 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -33.16 -7.65 -40.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597904001.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.115 kcal (2) G-P(sol) polarization free energy of solvation -33.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds