Wall clock time and date at job start Tue Mar 31 2020 19:22:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45193 * 1 3 3 C 1.34697 * 116.99770 * 2 1 4 4 O 1.21441 * 119.99451 * 359.97438 * 3 2 1 5 5 C 1.47936 * 120.00144 * 180.02562 * 3 2 1 6 6 C 1.39685 * 119.98239 * 359.97389 * 5 3 2 7 7 C 1.37703 * 120.06709 * 180.02562 * 6 5 3 8 8 C 1.39634 * 120.04343 * 0.02562 * 7 6 5 9 9 C 1.47893 * 120.02261 * 180.02562 * 8 7 6 10 10 O 1.21550 * 120.00262 * 233.86732 * 9 8 7 11 11 N 1.34773 * 120.00061 * 53.86624 * 9 8 7 12 12 C 1.46929 * 120.63083 * 5.51887 * 11 9 8 13 13 C 1.53628 * 108.54402 * 126.36674 * 12 11 9 14 14 C 1.53036 * 109.23895 * 54.86089 * 13 12 11 15 15 C 1.53042 * 109.53748 * 298.50621 * 14 13 12 16 16 H 1.08991 * 109.50187 * 301.41762 * 15 14 13 17 17 C 1.50703 * 109.49785 * 181.31585 * 15 14 13 18 18 H 1.08002 * 120.00123 * 0.16728 * 17 15 14 19 19 C 1.37875 * 120.00031 * 180.16139 * 17 15 14 20 20 N 1.31521 * 120.00021 * 0.02562 * 19 17 15 21 21 Si 1.86802 * 120.00098 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.46569 * 60.00455 * 21 19 17 23 23 H 1.48496 * 109.47302 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.47104 * 300.00617 * 21 19 17 25 25 C 1.46923 * 120.63292 * 185.79781 * 11 9 8 26 26 C 1.39788 * 119.96223 * 0.02562 * 8 7 6 27 27 F 1.35101 * 120.03530 * 180.25286 * 26 8 7 28 28 C 1.38194 * 119.93350 * 359.97438 * 26 8 7 29 29 H 1.09000 * 109.47676 * 60.00544 * 1 2 3 30 30 H 1.09000 * 109.46843 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47571 * 299.99655 * 1 2 3 32 32 H 1.07996 * 119.96295 * 0.02562 * 6 5 3 33 33 H 1.08007 * 119.98024 * 179.97438 * 7 6 5 34 34 H 1.08998 * 109.58933 * 246.20323 * 12 11 9 35 35 H 1.09007 * 109.58333 * 6.62781 * 12 11 9 36 36 H 1.09005 * 109.63558 * 294.86656 * 13 12 11 37 37 H 1.09000 * 109.45509 * 174.74402 * 13 12 11 38 38 H 1.09001 * 109.45896 * 178.49486 * 14 13 12 39 39 H 1.09001 * 109.45139 * 58.52542 * 14 13 12 40 40 H 0.97005 * 119.99685 * 179.97438 * 20 19 17 41 41 H 1.08992 * 109.58790 * 353.37830 * 25 11 9 42 42 H 1.09006 * 109.58270 * 113.80036 * 25 11 9 43 43 H 1.07997 * 120.02086 * 179.97438 * 28 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0634 1.2002 0.0000 4 8 1.4018 2.2186 -0.0005 5 6 3.5407 1.2777 -0.0006 6 6 4.3012 0.1060 -0.0006 7 6 5.6765 0.1761 -0.0006 8 6 6.3131 1.4189 0.0000 9 6 7.7901 1.4937 -0.0006 10 8 8.3661 2.1438 0.8497 11 7 8.4975 0.8410 -0.9440 12 6 7.8156 0.1512 -2.0476 13 6 8.4010 0.6561 -3.3753 14 6 9.9197 0.4687 -3.3604 15 6 10.5261 1.2933 -2.2226 16 1 10.2711 2.3442 -2.3590 17 6 12.0246 1.1337 -2.2289 18 1 12.4980 0.5089 -2.9719 19 6 12.7913 1.7853 -1.2863 20 7 12.2148 2.5458 -0.3813 21 14 14.6488 1.5880 -1.2945 22 1 15.1916 2.0664 -2.5914 23 1 15.2362 2.3846 -0.1875 24 1 14.9953 0.1557 -1.1111 25 6 9.9650 0.8005 -0.8850 26 6 5.5535 2.5924 0.0010 27 9 6.1679 3.7956 -0.0036 28 6 4.1734 2.5206 0.0010 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 3.8101 -0.8558 -0.0006 33 1 6.2631 -0.7307 -0.0001 34 1 7.9742 -0.9236 -1.9604 35 1 6.7482 0.3694 -2.0108 36 1 8.1659 1.7131 -3.5008 37 1 7.9723 0.0875 -4.2006 38 1 10.3359 0.8011 -4.3114 39 1 10.1540 -0.5852 -3.2100 40 1 12.7542 3.0040 0.2821 41 1 10.3164 1.4470 -0.0809 42 1 10.2953 -0.2226 -0.7049 43 1 3.5852 3.4263 0.0023 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597904001.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:22:44 Heat of formation + Delta-G solvation = -157.245922 kcal Electronic energy + Delta-G solvation = -28916.715068 eV Core-core repulsion = 24647.689583 eV Total energy + Delta-G solvation = -4269.025485 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.137 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -50.16914 -41.82937 -41.25546 -39.45898 -38.33547 -37.56374 -35.36963 -33.72753 -32.79994 -31.95996 -31.45342 -28.87227 -27.27226 -26.75686 -25.26537 -24.02899 -23.40732 -22.54647 -21.62555 -20.26454 -19.51399 -18.75445 -18.39332 -18.06153 -17.48652 -17.44562 -17.21246 -17.15824 -16.75294 -16.46431 -15.88510 -15.52261 -15.28851 -15.08612 -14.83289 -14.63807 -14.47242 -14.38419 -14.33271 -13.92625 -13.68565 -13.45228 -13.38968 -13.05967 -12.85429 -12.71776 -12.60277 -12.28586 -12.26943 -11.86525 -11.82298 -11.81802 -11.64780 -11.24857 -10.97036 -10.83281 -10.53411 -10.36007 -10.05352 -9.48900 -8.10949 -6.28950 -0.89545 -0.09187 1.08630 1.41064 1.42254 1.46941 1.51001 1.59072 2.02999 2.38842 2.42121 2.96521 3.15986 3.25314 3.47116 3.57458 3.84642 3.88854 4.03960 4.15486 4.29875 4.33420 4.39718 4.39915 4.58891 4.59681 4.72845 4.77890 4.79257 4.79850 4.84867 4.87504 4.96550 5.09236 5.21099 5.23653 5.26052 5.33963 5.43915 5.51990 5.60888 5.88985 5.98942 6.31034 6.50894 6.54132 6.84404 7.11757 7.41832 8.92089 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.025030 B = 0.002719 C = 0.002587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.409136 B =10295.111983 C =10820.852215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.345 6.345 3 C 0.518 3.482 4 O -0.528 6.528 5 C -0.086 4.086 6 C -0.045 4.045 7 C -0.061 4.061 8 C -0.127 4.127 9 C 0.537 3.463 10 O -0.580 6.580 11 N -0.595 5.595 12 C 0.098 3.902 13 C -0.129 4.129 14 C -0.105 4.105 15 C 0.037 3.963 16 H -0.021 1.021 17 C -0.534 4.534 18 H 0.065 0.935 19 C 0.008 3.992 20 N -0.917 5.917 21 Si 0.958 3.042 22 H -0.269 1.269 23 H -0.292 1.292 24 H -0.263 1.263 25 C 0.124 3.876 26 C 0.106 3.894 27 F -0.144 7.144 28 C -0.089 4.089 29 H 0.065 0.935 30 H 0.139 0.861 31 H 0.063 0.937 32 H 0.194 0.806 33 H 0.177 0.823 34 H 0.101 0.899 35 H 0.103 0.897 36 H 0.040 0.960 37 H 0.109 0.891 38 H 0.050 0.950 39 H 0.066 0.934 40 H 0.259 0.741 41 H 0.075 0.925 42 H 0.052 0.948 43 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.352 -12.294 -2.452 27.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.260 6.260 3 C 0.364 3.636 4 O -0.418 6.418 5 C -0.087 4.087 6 C -0.062 4.062 7 C -0.079 4.079 8 C -0.131 4.131 9 C 0.324 3.676 10 O -0.461 6.461 11 N -0.326 5.326 12 C -0.023 4.023 13 C -0.167 4.167 14 C -0.142 4.142 15 C 0.017 3.983 16 H -0.003 1.003 17 C -0.573 4.573 18 H 0.084 0.916 19 C -0.192 4.192 20 N -0.556 5.556 21 Si 0.784 3.216 22 H -0.194 1.194 23 H -0.218 1.218 24 H -0.188 1.188 25 C 0.002 3.998 26 C 0.086 3.914 27 F -0.122 7.122 28 C -0.108 4.108 29 H 0.083 0.917 30 H 0.157 0.843 31 H 0.082 0.918 32 H 0.212 0.788 33 H 0.194 0.806 34 H 0.120 0.880 35 H 0.121 0.879 36 H 0.059 0.941 37 H 0.127 0.873 38 H 0.069 0.931 39 H 0.085 0.915 40 H 0.068 0.932 41 H 0.093 0.907 42 H 0.070 0.930 43 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -24.207 -11.539 -1.886 26.882 hybrid contribution 1.511 1.381 0.395 2.085 sum -22.696 -10.158 -1.491 24.910 Atomic orbital electron populations 1.23667 0.73734 1.06260 1.02787 1.86515 1.25495 1.30569 1.83457 1.20982 0.88530 0.81943 0.72192 1.90856 1.67164 1.37197 1.46603 1.18987 0.89804 0.93912 1.06011 1.21791 0.92057 0.99288 0.93107 1.21504 0.95190 0.95447 0.95730 1.20352 0.92460 0.95307 1.05004 1.18786 0.87466 0.79312 0.82006 1.90822 1.72273 1.42468 1.40501 1.48478 1.08024 1.51060 1.24996 1.22312 0.97312 0.97883 0.84790 1.22009 0.95840 1.00976 0.97854 1.21519 0.94754 1.00010 0.97937 1.18917 0.94286 0.93372 0.91685 1.00301 1.21493 0.92310 1.29101 1.14359 0.91644 1.25936 1.03413 0.94624 0.95188 1.70105 1.36953 1.31025 1.17534 0.85603 0.79938 0.78574 0.77524 1.19429 1.21756 1.18781 1.21808 0.75776 0.99823 1.02412 1.17671 0.90751 0.79730 1.03242 1.91544 1.83611 1.43385 1.93706 1.21085 0.90885 1.00000 0.98851 0.91657 0.84325 0.91838 0.78845 0.80605 0.88044 0.87874 0.94085 0.87278 0.93125 0.91516 0.93195 0.90703 0.93015 0.82480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 10.56 113.37 1.20 1.41 16 2 O -0.34 -4.35 9.80 -56.06 -0.55 -4.89 16 3 C 0.52 9.38 7.90 70.39 0.56 9.93 16 4 O -0.53 -12.67 16.12 20.03 0.32 -12.35 16 5 C -0.09 -1.54 5.87 -20.06 -0.12 -1.66 16 6 C -0.04 -0.58 9.60 22.49 0.22 -0.36 16 7 C -0.06 -1.08 7.74 22.48 0.17 -0.91 16 8 C -0.13 -3.77 4.62 -20.01 -0.09 -3.86 16 9 C 0.54 22.25 6.88 86.80 0.60 22.85 16 10 O -0.58 -31.15 16.26 -3.87 -0.06 -31.21 16 11 N -0.60 -23.19 2.97 -821.40 -2.44 -25.63 16 12 C 0.10 2.56 5.59 86.51 0.48 3.05 16 13 C -0.13 -3.68 6.10 30.82 0.19 -3.50 16 14 C -0.10 -3.90 5.10 30.62 0.16 -3.74 16 15 C 0.04 1.84 2.25 -11.46 -0.03 1.82 16 16 H -0.02 -1.26 8.14 -2.39 -0.02 -1.28 16 17 C -0.53 -29.23 8.56 25.60 0.22 -29.01 16 18 H 0.07 3.40 7.74 -2.91 -0.02 3.38 16 19 C 0.01 0.43 5.30 84.65 0.45 0.88 16 20 N -0.92 -56.74 11.39 21.45 0.24 -56.49 16 21 Si 0.96 44.33 29.54 68.60 2.03 46.36 16 22 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 23 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 24 H -0.26 -11.51 7.11 99.48 0.71 -10.80 16 25 C 0.12 6.06 5.41 86.36 0.47 6.53 16 26 C 0.11 3.23 7.26 22.63 0.16 3.40 16 27 F -0.14 -5.52 16.63 44.97 0.75 -4.78 16 28 C -0.09 -2.08 9.56 22.56 0.22 -1.87 16 29 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.14 0.12 8.14 -2.39 -0.02 0.10 16 31 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 32 H 0.19 0.98 7.60 -2.91 -0.02 0.95 16 33 H 0.18 2.24 7.74 -2.91 -0.02 2.22 16 34 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 35 H 0.10 2.09 5.37 -2.38 -0.01 2.08 16 36 H 0.04 1.33 8.14 -2.38 -0.02 1.32 16 37 H 0.11 2.17 8.14 -2.39 -0.02 2.15 16 38 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 39 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 40 H 0.26 15.53 8.31 -92.70 -0.77 14.76 16 41 H 0.07 4.48 5.11 -2.39 -0.01 4.47 16 42 H 0.05 2.42 8.14 -2.38 -0.02 2.40 16 43 H 0.16 3.53 7.63 -2.91 -0.02 3.51 16 Total: -1.00 -82.02 363.26 6.18 -75.84 By element: Atomic # 1 Polarization: 7.17 SS G_CDS: 1.04 Total: 8.21 kcal Atomic # 6 Polarization: 0.10 SS G_CDS: 4.85 Total: 4.95 kcal Atomic # 7 Polarization: -79.93 SS G_CDS: -2.19 Total: -82.12 kcal Atomic # 8 Polarization: -48.16 SS G_CDS: -0.29 Total: -48.45 kcal Atomic # 9 Polarization: -5.52 SS G_CDS: 0.75 Total: -4.78 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.36 kcal Total: -82.02 6.18 -75.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597904001.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.410 kcal (2) G-P(sol) polarization free energy of solvation -82.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds