Wall clock time and date at job start Tue Mar 31 2020 19:26:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34672 * 116.99883 * 2 1 4 4 O 1.21426 * 120.00159 * 359.97438 * 3 2 1 5 5 C 1.48064 * 119.99808 * 180.02562 * 3 2 1 6 6 C 1.40060 * 120.88630 * 0.24254 * 5 3 2 7 7 C 1.37948 * 119.16434 * 180.30148 * 6 5 3 8 8 N 1.31914 * 121.00859 * 359.72554 * 7 6 5 9 9 C 1.32311 * 121.96157 * 359.97438 * 8 7 6 10 10 N 1.39021 * 119.64678 * 180.02562 * 9 8 7 11 11 C 1.46852 * 110.99681 * 63.59615 * 10 9 8 12 12 C 1.53043 * 109.52072 * 174.16226 * 11 10 9 13 13 C 1.53117 * 109.27874 * 59.17834 * 12 11 10 14 14 C 1.50707 * 109.52248 * 182.44041 * 13 12 11 15 15 H 1.07998 * 119.99624 * 119.68075 * 14 13 12 16 16 C 1.37869 * 119.99876 * 299.68345 * 14 13 12 17 17 N 1.31517 * 120.00240 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00050 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47010 * 359.97438 * 18 16 14 20 20 H 1.48495 * 109.47252 * 119.99717 * 18 16 14 21 21 H 1.48505 * 109.47264 * 239.99963 * 18 16 14 22 22 C 1.53122 * 109.16165 * 302.34713 * 13 12 11 23 23 C 1.46847 * 111.00240 * 299.38738 * 10 9 8 24 24 C 1.39126 * 120.71146 * 0.02562 * 9 8 7 25 25 N 1.48022 * 120.53921 * 180.02562 * 24 9 8 26 26 O 1.21801 * 119.99967 * 91.04513 * 25 24 9 27 27 O 1.21806 * 119.99706 * 271.04868 * 25 24 9 28 28 H 1.09000 * 109.46810 * 299.99888 * 1 2 3 29 29 H 1.09002 * 109.47328 * 59.99663 * 1 2 3 30 30 H 1.08998 * 109.47163 * 180.02562 * 1 2 3 31 31 H 1.07992 * 120.41591 * 0.02562 * 6 5 3 32 32 H 1.08001 * 119.49530 * 179.70389 * 7 6 5 33 33 H 1.09000 * 109.46245 * 294.17692 * 11 10 9 34 34 H 1.08999 * 109.46345 * 54.15032 * 11 10 9 35 35 H 1.08997 * 109.50027 * 299.23783 * 12 11 10 36 36 H 1.08995 * 109.50293 * 179.12351 * 12 11 10 37 37 H 1.09002 * 109.52186 * 62.25239 * 13 12 11 38 38 H 0.97006 * 119.99976 * 179.97438 * 17 16 14 39 39 H 1.09005 * 109.50286 * 297.70970 * 22 13 12 40 40 H 1.08997 * 109.50464 * 177.59674 * 22 13 12 41 41 H 1.09002 * 109.45706 * 305.85478 * 23 10 9 42 42 H 1.09004 * 109.46112 * 65.82044 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0634 1.2000 0.0000 4 8 1.4020 2.2183 -0.0005 5 6 3.5420 1.2774 -0.0006 6 6 4.3228 0.1147 -0.0062 7 6 5.6976 0.2282 -0.0002 8 7 6.2819 1.4109 0.0053 9 6 5.5856 2.5360 0.0048 10 7 6.2512 3.7566 0.0102 11 6 7.0435 3.9293 -1.2141 12 6 7.6430 5.3372 -1.2409 13 6 8.5272 5.5337 -0.0064 14 6 9.0727 6.9386 0.0039 15 1 8.8452 7.6000 0.8267 16 6 9.8619 7.3792 -1.0371 17 7 10.1393 6.5735 -2.0389 18 14 10.5386 9.1203 -1.0240 19 1 10.0847 9.8185 0.2055 20 1 12.0227 9.0748 -1.0487 21 1 10.0458 9.8520 -2.2187 22 6 7.6896 5.3007 1.2540 23 6 7.0888 3.8940 1.2085 24 6 4.1946 2.5108 -0.0011 25 7 3.4195 3.7719 -0.0021 26 8 3.0886 4.2824 -1.0573 27 8 3.1126 4.2990 1.0522 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 3.8545 -0.8584 -0.0106 32 1 6.3049 -0.6649 0.0003 33 1 7.8463 3.1923 -1.2342 34 1 6.4019 3.7912 -2.0844 35 1 6.8403 6.0746 -1.2348 36 1 8.2436 5.4598 -2.1421 37 1 9.3523 4.8218 -0.0323 38 1 10.6943 6.8838 -2.7715 39 1 6.8877 6.0376 1.2995 40 1 8.3236 5.3972 2.1353 41 1 6.4801 3.7301 2.0977 42 1 7.8914 3.1571 1.1770 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598610481.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:26:45 Heat of formation + Delta-G solvation = -28.526219 kcal Electronic energy + Delta-G solvation = -29679.329726 eV Core-core repulsion = 25435.805908 eV Total energy + Delta-G solvation = -4243.523818 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.136 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.29159 -41.04540 -40.56933 -38.23326 -37.14245 -36.15962 -34.47763 -33.63485 -32.11724 -30.40113 -29.95772 -28.61081 -26.85112 -26.19913 -24.80801 -23.05753 -22.46593 -22.30005 -21.34282 -19.39806 -18.91322 -18.68148 -18.48702 -17.99188 -17.33387 -17.02617 -16.63102 -16.21862 -15.89047 -15.38712 -15.15475 -14.56459 -14.33058 -14.13412 -13.82063 -13.67451 -13.37760 -12.79734 -12.66163 -12.57528 -12.46968 -11.69277 -11.51429 -11.41702 -11.38721 -11.25544 -11.02240 -10.92417 -10.85762 -10.75057 -10.56286 -10.36123 -10.29858 -10.22074 -9.77200 -9.54385 -9.09297 -8.84589 -8.55504 -8.33571 -6.00318 -4.05273 -0.39326 0.13042 0.84156 1.34844 1.78210 1.81438 2.87316 3.27151 3.31287 3.39623 3.44035 3.68723 3.81106 4.05638 4.33648 4.40316 4.44912 4.59751 4.70347 4.85328 4.97222 5.04444 5.30428 5.33502 5.55029 5.59104 5.64073 5.84453 5.99214 6.06987 6.33931 6.43334 6.48574 6.70379 6.82982 6.90297 6.92376 7.09035 7.18403 7.29821 7.40011 7.72616 7.85761 7.95711 8.06485 8.42908 8.98092 9.59787 11.06384 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.023464 B = 0.003033 C = 0.002861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.006553 B = 9230.382106 C = 9783.784780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.345 6.345 3 C 0.503 3.497 4 O -0.473 6.473 5 C -0.033 4.033 6 C -0.123 4.123 7 C 0.142 3.858 8 N -0.466 5.466 9 C 0.363 3.637 10 N -0.499 5.499 11 C 0.063 3.937 12 C -0.104 4.104 13 C 0.048 3.952 14 C -0.509 4.509 15 H 0.057 0.943 16 C 0.061 3.939 17 N -0.893 5.893 18 Si 0.891 3.109 19 H -0.273 1.273 20 H -0.285 1.285 21 H -0.284 1.284 22 C -0.107 4.107 23 C 0.066 3.934 24 C -0.010 4.010 25 N 0.047 4.953 26 O -0.125 6.125 27 O -0.126 6.126 28 H 0.069 0.931 29 H 0.070 0.930 30 H 0.110 0.890 31 H 0.171 0.829 32 H 0.184 0.816 33 H 0.048 0.952 34 H 0.059 0.941 35 H 0.049 0.951 36 H 0.102 0.898 37 H 0.025 0.975 38 H 0.259 0.741 39 H 0.062 0.938 40 H 0.060 0.940 41 H 0.061 0.939 42 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.575 -19.622 3.582 24.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.261 6.261 3 C 0.345 3.655 4 O -0.359 6.359 5 C -0.043 4.043 6 C -0.143 4.143 7 C -0.017 4.017 8 N -0.179 5.179 9 C 0.134 3.866 10 N -0.225 5.225 11 C -0.061 4.061 12 C -0.143 4.143 13 C 0.029 3.971 14 C -0.547 4.547 15 H 0.075 0.925 16 C -0.140 4.140 17 N -0.532 5.532 18 Si 0.719 3.281 19 H -0.198 1.198 20 H -0.211 1.211 21 H -0.210 1.210 22 C -0.144 4.144 23 C -0.059 4.059 24 C -0.096 4.096 25 N 0.580 4.420 26 O -0.350 6.350 27 O -0.351 6.351 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.128 0.872 31 H 0.189 0.811 32 H 0.201 0.799 33 H 0.066 0.934 34 H 0.077 0.923 35 H 0.067 0.933 36 H 0.120 0.880 37 H 0.043 0.957 38 H 0.069 0.931 39 H 0.080 0.920 40 H 0.079 0.921 41 H 0.079 0.921 42 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -13.737 -19.521 3.433 24.116 hybrid contribution -0.353 0.462 -0.148 0.600 sum -14.090 -19.058 3.285 23.928 Atomic orbital electron populations 1.23452 0.74417 1.04433 1.03418 1.86479 1.24693 1.30978 1.83949 1.20748 0.87967 0.82606 0.74212 1.91013 1.66115 1.35679 1.43080 1.19130 0.91216 0.92071 1.01902 1.22529 0.94765 0.98478 0.98577 1.23165 0.92114 0.95900 0.90535 1.68287 1.40234 0.98433 1.10967 1.19862 0.87201 0.90675 0.88832 1.60516 1.34315 1.20598 1.07026 1.22486 0.94448 1.02080 0.87124 1.21759 0.98433 0.90015 1.04058 1.18715 0.92491 0.97045 0.88830 1.21197 1.29918 0.97686 1.05935 0.92492 1.24966 0.96099 0.97390 0.95553 1.69865 1.38175 1.35360 1.09781 0.86543 0.78557 0.84906 0.78050 1.19762 1.21148 1.21019 1.21735 0.99328 0.92489 1.00897 1.22274 0.94317 1.00715 0.88592 1.21912 0.92231 0.85147 1.10314 1.42629 0.98195 1.00429 1.00698 1.94552 1.55564 1.64148 1.20702 1.94537 1.56655 1.63033 1.20869 0.91199 0.91166 0.87195 0.81137 0.79903 0.93352 0.92291 0.93266 0.87985 0.95691 0.93067 0.91972 0.92099 0.92088 0.93173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.22 10.56 101.05 1.07 1.28 16 2 O -0.34 -3.02 9.92 -40.42 -0.40 -3.42 16 3 C 0.50 6.18 7.92 34.76 0.28 6.46 16 4 O -0.47 -7.43 14.51 -24.34 -0.35 -7.78 16 5 C -0.03 -0.40 5.90 -104.70 -0.62 -1.02 16 6 C -0.12 -0.97 9.70 -39.00 -0.38 -1.35 16 7 C 0.14 1.22 11.16 -17.62 -0.20 1.02 16 8 N -0.47 -6.27 9.70 -12.48 -0.12 -6.39 16 9 C 0.36 5.85 5.29 -155.08 -0.82 5.03 16 10 N -0.50 -9.34 4.35 -173.25 -0.75 -10.10 16 11 C 0.06 1.26 5.28 -3.83 -0.02 1.24 16 12 C -0.10 -2.46 5.12 -26.65 -0.14 -2.59 16 13 C 0.05 1.17 2.16 -91.64 -0.20 0.97 16 14 C -0.51 -13.85 8.56 -34.44 -0.29 -14.14 16 15 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 16 C 0.06 1.67 5.31 -17.82 -0.09 1.57 16 17 N -0.89 -25.12 11.37 55.43 0.63 -24.49 16 18 Si 0.89 21.33 29.54 -169.99 -5.02 16.31 16 19 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 20 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 21 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 22 C -0.11 -2.23 5.32 -26.65 -0.14 -2.37 16 23 C 0.07 1.21 5.25 -3.84 -0.02 1.19 16 24 C -0.01 -0.17 6.22 -79.13 -0.49 -0.66 16 25 N 0.05 0.88 2.31 34.36 0.08 0.96 16 26 O -0.12 -2.49 18.97 -32.55 -0.62 -3.11 16 27 O -0.13 -2.48 19.05 -31.95 -0.61 -3.09 16 28 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.11 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.17 0.70 7.71 -52.49 -0.40 0.29 16 32 H 0.18 0.77 8.06 -52.49 -0.42 0.35 16 33 H 0.05 0.96 8.05 -51.93 -0.42 0.54 16 34 H 0.06 1.13 8.10 -51.93 -0.42 0.71 16 35 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.10 2.65 6.17 -51.93 -0.32 2.33 16 37 H 0.02 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 39 H 0.06 1.36 8.14 -51.93 -0.42 0.93 16 40 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 41 H 0.06 1.03 8.10 -51.93 -0.42 0.61 16 42 H 0.05 0.90 8.00 -51.93 -0.42 0.49 16 LS Contribution 362.05 15.07 5.46 5.46 Total: -1.00 -33.04 362.05 -9.10 -42.15 By element: Atomic # 1 Polarization: 2.20 SS G_CDS: -5.32 Total: -3.12 kcal Atomic # 6 Polarization: -1.30 SS G_CDS: -2.07 Total: -3.37 kcal Atomic # 7 Polarization: -39.85 SS G_CDS: -0.16 Total: -40.01 kcal Atomic # 8 Polarization: -15.43 SS G_CDS: -1.98 Total: -17.41 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -33.04 -9.10 -42.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598610481.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.620 kcal (2) G-P(sol) polarization free energy of solvation -33.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds